mRNA_M-pyrifera_M_contig109394.1963.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: L0DQ77_SINAD (HEAT repeat-containing protein n=3 Tax=Singulisphaera acidiphila TaxID=466153 RepID=L0DQ77_SINAD) HSP 1 Score: 70.5 bits (171), Expect = 1.220e-10 Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query: 22 LGRIGPDATAAIPALNEAMKAQGGQRLIRVAHAL----GQMGPAIIPTMIKDLEGDNRNAREGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQAEEPLGRALDHEEEPVRVGA-LTALATIGPRT----ADVADRLSQLTTDGSIEQ------RIAALRAVA------ATSIDRDQMLTMLINSLT 558
LGR+GP A A+PAL A+K + + A+AL G+ A++P + L+ D+ N R A AL +N P L AL + D AA L R+ Q ++ + D ++P+ + LTAL +GP + + DRL++ D Q R+A AVA AT+ R Q + + +LT
Sbjct: 1394 LGRLGPGAKEAVPALTLALKDKTAAVRVATANALRLIDGEQEAAVVPVLADGLQDDDANVRRAATEALARINPVPAELAPNLTTALEEADGVTRLHAASALARLPGQTDKAVAVLADLLDDPLLCSSSLTALDQLGPTAKGAFSKLVDRLNEAYDDPVFGQLANTLARVAGAEAVAPLLKAHATADTRHQPMVVAALALT 1593
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: A0A517PWZ1_9PLAN (Putative lyase n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517PWZ1_9PLAN) HSP 1 Score: 62.8 bits (151), Expect = 4.170e-8 Identity = 59/200 (29.50%), Postives = 88/200 (44.00%), Query Frame = 1
Query: 4 FQSTITLGRIGPDATAAIPALNEAMKAQGGQRLIRVAHALGQMGPAIIPTMIKDLEGDNRNAREGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQAEEP---LGRALDHEEEPVRVGALTALATIGPRTADVADRLSQL--TTDGSIEQRIAALRAVAATSIDRDQMLTMLINSLTDADEGVRSTA 588
+++ +L ++GP A AIP L A+ G V + +GP + RNA A+ ++G P VP LI AL D D A AA TL ++GP A L R L+ E VR A+ A+A +G V L Q D R++ L ++A ++ +LI +L D+D V + A
Sbjct: 43 YKAARSLQKLGPTAEPAIPPLIAALNDLGAPTKYDVQY----LGPRV------------RNAASDALASIGR------PTVPALIKALRDKDPATRAMAADTLAKLGPDANASFAELSRTLNDPESWVRDSAVAAIARVGAAPQVVVPLLEQKYRRADKDDYIRVSILESLANADPQATMVMPLLIEALDDSDGDVMAAA 220
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: A0A7Y2F527_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2F527_9BACT) HSP 1 Score: 59.7 bits (143), Expect = 5.400e-7 Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 190 REGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQAEEPLGRALDHEEEPVRVGALTALATIGPRTADVAD 438
R A+ +LGW+NA A AVP L A D++ V QAA +L R+GP A+ L R LD ++E VR + T L + A V D
Sbjct: 151 RVAALDSLGWMNAHAPRAVPILADATSDENDDVRRQAAWSLSRIGPAAQNALTRGLDSDDEEVRAISATGLGKLDQLPASVRD 233
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: A0A5S9IRK7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IRK7_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 7.930e-6 Identity = 36/146 (24.66%), Postives = 70/146 (47.95%), Query Frame = 1
Query: 7 QSTITLGRIGPDATAAIPALNEAMKAQGGQRLIRVAHALGQMGPAIIPTMIKDLEGDNRNAREGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQAEE---PLGRALDHEEEPVRVGALTALATIGPRTADVA 435
S + LG+IGPDA++A+P L E + ++ + ++R L Q+G +P + + L ++N + +R L + ++ A ++ L +D +V L R+ A E L + + E+ R+ + +G R D+A
Sbjct: 47 SSIVELGKIGPDASSAVPLLIECLSSKNSRIVLRTIRTLQQIGTRGLPDLQEALHRKDKNIQRKILRVLCGIESQFELASFDVVALLQSEDVRVRIYTLNLLERLPSHAAEVVPELSQIIVSEDPEQRMAVVKVFCALGKRVMDMA 192
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: B7K6K0_RIPO1 (HEAT domain containing protein n=1 Tax=Rippkaea orientalis (strain PCC 8801) TaxID=41431 RepID=B7K6K0_RIPO1) HSP 1 Score: 54.7 bits (130), Expect = 1.740e-5 Identity = 57/189 (30.16%), Postives = 86/189 (45.50%), Query Frame = 1
Query: 55 IPALNEAMKAQGGQRLIRVAHALGQMGPAIIPTMIKDLEG-DNRNAREGAVRALGWLNAEAVPAVPQLIVA-LGDDDAKVHAQAAQTLGRMGPQAEEPLGRALDHEEEP--VRVGALTALATIGPRTADVADRLSQLTTDGSIEQRIAALRAVA--ATSIDRDQMLTMLINSLTDADEGVR--STAIVG 597
+ +L E + G +R A LG++G P ++ L N R A + L + +PQLI + L D+D V + L RMG PL L + P + A ALA IGP+ L+Q + S R A + A+A A S ++L +L+NSL+D D VR + A++G
Sbjct: 36 LKSLVECLGDTRGMTRLRAAQTLGEIGQPATPFLLDALANHSNVVVRRAAAKTLTLIADPQT--IPQLIESFLNDEDTVVQGSSVGALARMGEAGVFPLLNILGSPDVPESAKGHAAWALAFIGPQAKQ---HLNQAVSHDSPVVRAAVVGAIAKVAASEPDQELLDILVNSLSDPDSNVRCETAAVLG 219
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: A0A3E1EQC2_9BACT (HEAT repeat n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1EQC2_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 9.060e-5 Identity = 32/76 (42.11%), Postives = 41/76 (53.95%), Query Frame = 1
Query: 106 RVAHALGQMGPAIIPTMIKDLEGDNRNAREGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQA 333
R A ALG+ +P ++ L G+NR+AR GA+ ALG L A A PQL L + D V AA L +GP A
Sbjct: 486 RSAAALGKRDGDHLPVLLTMLAGENRDARYGAIEALGALGPRADAAAPQLRALLTNSDVWVQCLAAAALPELGPDA 561 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig109394.1963.1 >prot_M-pyrifera_M_contig109394.1963.1 ID=prot_M-pyrifera_M_contig109394.1963.1|Name=mRNA_M-pyrifera_M_contig109394.1963.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp WFQSTITLGRIGPDATAAIPALNEAMKAQGGQRLIRVAHALGQMGPAIIPback to top mRNA from alignment at M-pyrifera_M_contig109394:3..602+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig109394.1963.1 ID=mRNA_M-pyrifera_M_contig109394.1963.1|Name=mRNA_M-pyrifera_M_contig109394.1963.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig109394:3..602+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig109394:3..602+ >mRNA_M-pyrifera_M_contig109394.1963.1 ID=mRNA_M-pyrifera_M_contig109394.1963.1|Name=mRNA_M-pyrifera_M_contig109394.1963.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig109394:3..602+ (Macrocystis pyrifera P11B4 male)back to top |