mRNA_M-pyrifera_M_contig109387.1959.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109387.1959.1
Unique NamemRNA_M-pyrifera_M_contig109387.1959.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A7K1Z9C7_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z9C7_9ACTN)

HSP 1 Score: 214 bits (545), Expect = 8.740e-69
Identity = 107/145 (73.79%), Postives = 120/145 (82.76%), Query Frame = 1
Query:    4 ANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSPAPDDLVAWRRPHFDEVHHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLGL 438
            ANRPGEV+G  QPSGPAVGNQGPDQGYV  LA R + ELVLAPGEHA+D + GACAVALRRASLYGRAP+  DLR+AL++FGFL  A D+LV +RRP F+E+HH   HYF AREIADLVPEATLRM P EVAAA A DW+ PLGL
Sbjct:   29 ANRPGEVVGGAQPSGPAVGNQGPDQGYVHKLAKRFESELVLAPGEHASDVLEGACAVALRRASLYGRAPVADDLRVALTVFGFLGSAVDELVEFRRPLFEELHHVAFHYFTAREIADLVPEATLRMGPTEVAAACAEDWRVPLGL 173          
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A538CY33_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CY33_9ACTN)

HSP 1 Score: 156 bits (394), Expect = 7.300e-46
Identity = 88/143 (61.54%), Postives = 105/143 (73.43%), Query Frame = 1
Query:   10 RPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFL-SPAPDDLVAWRRPHFDEVHHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLG 435
            RPG++ G  QPSGP  G QGPDQGY LTLA R++D+LVLA GE A + I G   VALRRA+L+GRAP+I DLRLA  LFGFL + AP DL+A+RRP F EV  S+ HY  ARE+A LVPE  LR  PDEV AA  +DW++ LG
Sbjct:   32 RPGDLQGRGQPSGPGFGVQGPDQGYALTLARRLRDQLVLADGESADEVIAGCLGVALRRAALFGRAPVIDDLRLAFHLFGFLDNEAPADLIAFRRPLFAEVD-SSHHYAEARELATLVPEEALRQTPDEV-AARRSDWRSLLG 172          
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A6J7I912_9ZZZZ (Unannotated protein n=4 Tax=root TaxID=1 RepID=A0A6J7I912_9ZZZZ)

HSP 1 Score: 151 bits (382), Expect = 4.400e-44
Identity = 88/145 (60.69%), Postives = 102/145 (70.34%), Query Frame = 1
Query:    4 ANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSP-APDDLVAWRRPHFDEVHHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLG 435
            A+RP EV+   QP+G A G QGPDQGY L LA   + +L LAPGEH  DAI G   VA+RRASLYGRAPM+ DL+LA SLFGFL   AP DLVA+R P F EV +   HYF  R IA LVPEATLR+ P+ VAAA+  DW+  LG
Sbjct:   29 ASRPAEVVEGGQPAGDAFGFQGPDQGYALKLANSFRGKLHLAPGEHEEDAIAGCLVVAMRRASLYGRAPMMPDLKLAFSLFGFLDEGAPADLVAFRTPLFVEVSNPH-HYFEGRHIASLVPEATLRLTPEVVAAAT--DWRALLG 170          
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A2D7RXE4_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7RXE4_9ACTN)

HSP 1 Score: 150 bits (379), Expect = 1.460e-43
Identity = 81/144 (56.25%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 RANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSPAPDDLVAWRRPHFDEVHHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPL 432
            RA RPGE IG   P+G A+GNQGPDQGY + LA     +L+LAPGEHAADA+ GA AV LRRAS++GRAP+  D  L L  +GFL  AP  L   R   F EVHH+TIHYF+AREIAD V    LR        A  ADWK  L
Sbjct:   28 RAERPGETIGAPHPTGGALGNQGPDQGYAIKLAKAFAGDLILAPGEHAADALXGAVAVGLRRASMFGRAPVRDDXELGLLAYGFLGEAPAALXXXRXALFSEVHHTTIHYFSAREIADRVDGEWLRQPIASARVALQADWKAAL 171          
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A6B0WNX7_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WNX7_9ACTN)

HSP 1 Score: 150 bits (378), Expect = 2.550e-43
Identity = 82/146 (56.16%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    4 ANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSPAPDDLVAWRRPHFDEV--HHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLG 435
            A+RPGEV+G    +GP +GNQGPDQGY L LA R   +LVL PGE   DA+ G  AVAL RAS++GRAP++ DLRLAL LFGFL  A  +LVAWRR  F     HH    Y     +ADLVP  TLR+ P  VA A + DW+TPLG
Sbjct:   29 ADRPGEVVGAEPVAGPGLGNQGPDQGYALKLAERFAGKLVLTPGEREDDALAGCVAVALSRASMFGRAPVMHDLRLALELFGFLDEADAELVAWRRDRFAGAAGHHG---YHVKLRLADLVPSDTLRLTPAAVAEARSKDWRTPLG 171          
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A7K2A3L4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A3L4_9ACTN)

HSP 1 Score: 149 bits (377), Expect = 2.600e-43
Identity = 81/147 (55.10%), Postives = 97/147 (65.99%), Query Frame = 1
Query:    4 ANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSPAPDDLVAWRRPHFDEV--HHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLGL 438
            A+RPGEV+G    +GP +GNQGPDQGY L LA R   +LVLA GE   DA+ G  AVALRRAS++GRAP++ DLRLAL LFGFL  A  +LVAWRR  F     HH    Y     +ADL+P  TLR+ P   A A   +W+TPLGL
Sbjct:   29 ADRPGEVVGGELTAGPGLGNQGPDQGYALKLAERFAGQLVLAAGEREDDALAGCVAVALRRASMFGRAPVVHDLRLALELFGFLDEADAELVAWRRDQFAGAAGHHG---YHVKLRLADLIPSDTLRLTPAAAAEARTDNWRTPLGL 172          
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A6N9ERY2_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N9ERY2_9ACTN)

HSP 1 Score: 149 bits (376), Expect = 3.690e-43
Identity = 82/147 (55.78%), Postives = 97/147 (65.99%), Query Frame = 1
Query:    4 ANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSPAPDDLVAWRRPHFDEV--HHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLGL 438
            A+RPGEV+G+  P+GP +G QGPDQGY L LA R    LVLA GE   DA+ G CAVALRRASL+GRAP++ DLRLAL LFGFL  A   LV WRR  F     HH    Y     +ADL+P  TLR+ P  VA A + +W+ PLGL
Sbjct:   29 ADRPGEVVGDEAPAGPGLGCQGPDQGYALKLAQRFAGRLVLADGEREDDALAGCCAVALRRASLFGRAPVMHDLRLALELFGFLIDADAALVTWRRARFAGAAGHHG---YHVKLRLADLIPADTLRLTPAAVAEACSENWRVPLGL 172          
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A7K1YU37_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1YU37_9ACTN)

HSP 1 Score: 147 bits (372), Expect = 1.490e-42
Identity = 81/147 (55.10%), Postives = 98/147 (66.67%), Query Frame = 1
Query:    4 ANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSPAPDDLVAWRRPHFDEV--HHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLGL 438
            A+RPGEV+G    +GP +GNQGPDQGY L LA RI  +LVLAPGE   +A+ G  +VALRRAS++GRAP++ DLRLAL LFGFL  A  +LVAWRR  F     HH    Y     +ADLVP  TLR+ P   A A   +W+ PLGL
Sbjct:   29 ADRPGEVVGIEPSAGPGLGNQGPDQGYALKLAERIVGQLVLAPGEREDNALAGCVSVALRRASMFGRAPVMHDLRLALELFGFLGEADAELVAWRRDRFAGAAGHHG---YHVNMRLADLVPTETLRLTPAAAAEARTDNWRAPLGL 172          
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A6B0ZCP6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0ZCP6_9ACTN)

HSP 1 Score: 147 bits (370), Expect = 2.990e-42
Identity = 82/147 (55.78%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    4 ANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSPAPDDLVAWRRPHFDEV--HHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLGL 438
            A+RPGEV+G    +GP +GNQGPDQGY L LA R+   LVL  GE   DA+ G  AVALRRAS++GRAP++ DLRLAL LFGFL  A  +LVAWRR  F     HH    Y     +A LVPE TLR  P  VA   A DW+ PLGL
Sbjct:   29 ADRPGEVVGTEPVAGPGLGNQGPDQGYALKLAERLAGRLVLTAGEREDDALAGCVAVALRRASMFGRAPVMHDLRLALELFGFLGEADAELVAWRRDQFAGAAGHHG---YHVKLRLAALVPEETLRRTPAAVAGLHANDWRDPLGL 172          
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Match: A0A7Y2GKK6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GKK6_9ACTN)

HSP 1 Score: 147 bits (370), Expect = 3.180e-42
Identity = 75/145 (51.72%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    4 ANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAADAITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSPAPD-DLVAWRRPHFDEVHHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLG 435
            A RPG+++G   P G  VG QGPDQG+V  L  +  D L L  GEH AD + G CAVALRRAS++GRAP+  DL LA ++FGF   APD +LV+WRR  F E+ H+  HY   R++A  VPEATLR+ P   A A  A+W+T +G
Sbjct:   29 ATRPGDLVGEDMPVGGGVGFQGPDQGFVRRLVPQFIDRLQLTDGEHRADVVEGCCAVALRRASIFGRAPVNHDLELAFTMFGFFDVAPDPELVSWRRERFAELSHTVQHYVEGRQLAGSVPEATLRLTPTAAAEAYRANWRTTVG 173          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109387.1959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1Z9C7_9ACTN8.740e-6973.79Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A538CY33_9ACTN7.300e-4661.54Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6J7I912_9ZZZZ4.400e-4460.69Unannotated protein n=4 Tax=root TaxID=1 RepID=A0A... [more]
A0A2D7RXE4_9ACTN1.460e-4356.25Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A6B0WNX7_9ACTN2.550e-4356.16Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A7K2A3L4_9ACTN2.600e-4355.10Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6N9ERY2_9ACTN3.690e-4355.78Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A7K1YU37_9ACTN1.490e-4255.10Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A6B0ZCP6_9ACTN2.990e-4255.78Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7Y2GKK6_9ACTN3.180e-4251.72Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109387contigM-pyrifera_M_contig109387:165..605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score117.1
Seed ortholog evalue7e-24
Seed eggNOG ortholog1313172.YM304_13050
Hectar predicted targeting categoryother localisation
EggNOG OGs2F7CY@1,2H76P@201174,33ZTZ@2,4CNCM@84992
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.923796-CDS-M-pyrifera_M_contig109387:164..6051622815603.923796-CDS-M-pyrifera_M_contig109387:164..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109387 165..605 -
1692277483.393268-CDS-M-pyrifera_M_contig109387:164..6051692277483.393268-CDS-M-pyrifera_M_contig109387:164..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109387 165..605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109387.1959.1prot_M-pyrifera_M_contig109387.1959.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109387 165..605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109387.1959.1

>prot_M-pyrifera_M_contig109387.1959.1 ID=prot_M-pyrifera_M_contig109387.1959.1|Name=mRNA_M-pyrifera_M_contig109387.1959.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
RANRPGEVIGNVQPSGPAVGNQGPDQGYVLTLAARIKDELVLAPGEHAAD
AITGACAVALRRASLYGRAPMIGDLRLALSLFGFLSPAPDDLVAWRRPHF
DEVHHSTIHYFAAREIADLVPEATLRMMPDEVAAASAADWKTPLGL*
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mRNA from alignment at M-pyrifera_M_contig109387:165..605-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109387.1959.1 ID=mRNA_M-pyrifera_M_contig109387.1959.1|Name=mRNA_M-pyrifera_M_contig109387.1959.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig109387:165..605- (Macrocystis pyrifera P11B4 male)
CGTGCCAACCGGCCCGGCGAAGTGATCGGCAACGTCCAGCCGTCGGGTCC CGCGGTCGGCAACCAGGGCCCCGACCAGGGCTATGTGCTCACGCTGGCCG CCCGGATCAAGGACGAGCTCGTGCTCGCCCCCGGCGAACACGCCGCCGAC GCGATCACCGGAGCCTGCGCGGTCGCGCTGCGCCGGGCATCGCTCTACGG CCGCGCACCGATGATCGGCGATCTGCGACTGGCGCTCTCGCTCTTCGGCT TCCTCTCGCCGGCGCCCGACGATCTGGTCGCCTGGCGTCGTCCCCACTTC GACGAAGTGCACCATTCGACCATCCACTACTTCGCGGCCCGCGAGATCGC CGACCTGGTGCCCGAGGCGACGCTGCGGATGATGCCCGACGAGGTGGCCG CGGCGAGCGCGGCCGATTGGAAGACGCCGCTCGGTCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109387:165..605-

>mRNA_M-pyrifera_M_contig109387.1959.1 ID=mRNA_M-pyrifera_M_contig109387.1959.1|Name=mRNA_M-pyrifera_M_contig109387.1959.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig109387:165..605- (Macrocystis pyrifera P11B4 male)
CGTGCCAACCGGCCCGGCGAAGTGATCGGCAACGTCCAGCCGTCGGGTCC
CGCGGTCGGCAACCAGGGCCCCGACCAGGGCTATGTGCTCACGCTGGCCG
CCCGGATCAAGGACGAGCTCGTGCTCGCCCCCGGCGAACACGCCGCCGAC
GCGATCACCGGAGCCTGCGCGGTCGCGCTGCGCCGGGCATCGCTCTACGG
CCGCGCACCGATGATCGGCGATCTGCGACTGGCGCTCTCGCTCTTCGGCT
TCCTCTCGCCGGCGCCCGACGATCTGGTCGCCTGGCGTCGTCCCCACTTC
GACGAAGTGCACCATTCGACCATCCACTACTTCGCGGCCCGCGAGATCGC
CGACCTGGTGCCCGAGGCGACGCTGCGGATGATGCCCGACGAGGTGGCCG
CGGCGAGCGCGGCCGATTGGAAGACGCCGCTCGGTCTCTAGCGTGCCAAC
CGGCCCGGCGAAGTGATCGGCAACGTCCAGCCGTCGGGTCCCGCGGTCGG
CAACCAGGGCCCCGACCAGGGCTATGTGCTCACGCTGGCCGCCCGGATCA
AGGACGAGCTCGTGCTCGCCCCCGGCGAACACGCCGCCGACGCGATCACC
GGAGCCTGCGCGGTCGCGCTGCGCCGGGCATCGCTCTACGGCCGCGCACC
GATGATCGGCGATCTGCGACTGGCGCTCTCGCTCTTCGGCTTCCTCTCGC
CGGCGCCCGACGATCTGGTCGCCTGGCGTCGTCCCCACTTCGACGAAGTG
CACCATTCGACCATCCACTACTTCGCGGCCCGCGAGATCGCCGACCTGGT
GCCCGAGGCGACGCTGCGGATGATGCCCGACGAGGTGGCCGCGGCGAGCG
CGGCCGATTGGAAGACGCCGCTCGGTCTCTAG
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