mRNA_M-pyrifera_M_contig109379.1956.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109379.1956.1
Unique NamemRNA_M-pyrifera_M_contig109379.1956.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Match: A0A1V9YTD5_9STRA (Transmembrane protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTD5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.790e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 LTPGAEYVLRIEARDPRFPGQFGNGSALVSMLANAPPRPGTLSIQPKVGTALSTEFKVTTSGWIDEQIPLQF 216
            LTPG  Y+ R+ A D    G  G G+  V++  NAPP PG++SI P  GTA++  F +T +GW DE +PL +
Sbjct: 1153 LTPGKTYIFRLTALDSN--GYSGYGT--VTIAVNAPPTPGSISIAPTQGTAITDLFTITCAGWTDENLPLSY 1220          
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Match: A0A067BWW2_SAPPC (GPS domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BWW2_SAPPC)

HSP 1 Score: 61.6 bits (148), Expect = 2.230e-9
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    1 LTPGAEYVLRIEARDPRFPGQFGNGSALVSMLANAPPRPGTLSIQPKVGTALSTEFKVTTSGWIDEQIPLQF 216
            LTPG  YV R+ A D      FG     +S+  N PP PG++SI P  GTA+S  F VT + W D  +PL +
Sbjct: 1008 LTPGKTYVFRLTALDSTGSAGFGT----ISITVNTPPTPGSMSILPAQGTAISDLFTVTCADWTDANLPLTY 1075          
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Match: T0PSS4_SAPDV (REJ domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PSS4_SAPDV)

HSP 1 Score: 59.3 bits (142), Expect = 1.460e-8
Identity = 30/72 (41.67%), Postives = 39/72 (54.17%), Query Frame = 1
Query:    1 LTPGAEYVLRIEARDPRFPGQFGNGSALVSMLANAPPRPGTLSIQPKVGTALSTEFKVTTSGWIDEQIPLQF 216
            LTPG  YV R+ A D      FG     +S+  N+PP PG++SI P  G A+S  F VT   W D  +PL +
Sbjct: 3984 LTPGKTYVFRLTALDSTGSAGFGT----ISITVNSPPTPGSMSILPAQGMAISDLFTVTCGDWTDANLPLTY 4051          
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Match: A0A8B7ZCQ2_ACAPL (polycystin-1-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZCQ2_ACAPL)

HSP 1 Score: 58.5 bits (140), Expect = 2.710e-8
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = 1
Query:    1 LTPGAEYVLRIEARDPRFPGQFGNGSALVSMLANAPPRPGTLSIQPKVGTALSTEFKVTTSGWIDE 198
            L  G EY LR++ +D       GNG    S L N PP  G   I P VG A++TEF +  SGW+DE
Sbjct: 1308 LDAGREYYLRLDVKDVLL----GNGFTQYSFLTNLPPYNGACQINPSVGFAVTTEFSINCSGWLDE 1369          
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Match: A0A7S3DK46_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DK46_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 3.640e-8
Identity = 33/68 (48.53%), Postives = 38/68 (55.88%), Query Frame = 1
Query:    1 LTPGAEYVLRIEARDPRFPGQFGN-GSALVSMLANAPPRPGTLSIQPKVGTALSTEFKVTTSGWIDEQ 201
              PG   V  IE R     GQ GN  SA   ++ N PP PG  S+QP VGTALST F V   GW+DE+
Sbjct:  384 FQPGQRVV--IECRGYAKAGQTGNFSSASAEVVGNVPPLPGLTSVQPGVGTALSTTFGVNLFGWVDEE 449          
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Match: UPI0014559276 (uncharacterized protein LOC117293120 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014559276)

HSP 1 Score: 55.1 bits (131), Expect = 4.540e-7
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 1
Query:    1 LTPGAEYVLRIEARDPRFPGQFGNGSALVSMLANAPPRPGTLSIQPKVGTALSTEFKVTTSGWIDE 198
            L  G EY+L++   D       G G    S + N PP  G+ SI P  G A+STEF +T SGW+DE
Sbjct: 2099 LEGGREYMLQLNVSDQTH----GRGFIQHSFITNLPPYDGSCSITPTTGYAISTEFSITCSGWLDE 2160          
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Match: A0A7S3LW85_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LW85_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 4.020e-6
Identity = 27/74 (36.49%), Postives = 41/74 (55.41%), Query Frame = 1
Query:    1 LTPGAEYVLRIEARDPRFPGQFGNGSALVSMLANAPPRPGTLSIQPKVGTALSTEFKVTTSGWIDE--QIPLQF 216
            LTPG  Y    EA  P F     +G A VS++ N+ P  G++S+ P +G A++T F+V    W D+    PL++
Sbjct:   99 LTPGTTYRFMAEAYHPAFEE---SGVAAVSVVVNSAPSSGSISVDPPIGRAMNTSFRVICEDWADDLDDTPLKY 169          
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Match: UPI0018D7794E (polycystin-1-like n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7794E)

HSP 1 Score: 52.4 bits (124), Expect = 4.060e-6
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 1
Query:    1 LTPGAEYVLRIEARDPRFPGQFGNGSALVSMLANAPPRPGTLSIQPKVGTALSTEFKVTTSGWIDE 198
            L  G EY LR++ +D       GNG    S L N PP  G+  I P  G A++TEF V  +GW++E
Sbjct: 1784 LDAGNEYNLRLDVKD----ALLGNGFLQHSFLTNLPPYNGSCQITPSEGYAVTTEFSVNCTGWLEE 1845          
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Match: UPI0009E62BFB (uncharacterized protein LOC110048087 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E62BFB)

HSP 1 Score: 49.7 bits (117), Expect = 3.640e-5
Identity = 21/56 (37.50%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   49 RFPGQFGNGSALVSMLANAPPRPGTLSIQPKVGTALSTEFKVTTSGWIDEQIPLQF 216
            R  GQ+G    + + + N+PP  GT  ++PK+G+A++T F++  SGW D   PL +
Sbjct: 1312 RLNGQYGE--YIHTFVTNSPPENGTCEVEPKIGSAMNTSFRINCSGWQDPDQPLTY 1365          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109379.1956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A1V9YTD5_9STRA9.790e-1144.44Transmembrane protein (Fragment) n=1 Tax=Thraustot... [more]
A0A067BWW2_SAPPC2.230e-943.06GPS domain-containing protein n=1 Tax=Saprolegnia ... [more]
T0PSS4_SAPDV1.460e-841.67REJ domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A8B7ZCQ2_ACAPL2.710e-843.94polycystin-1-like n=1 Tax=Acanthaster planci TaxID... [more]
A0A7S3DK46_9EUKA3.640e-848.53Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
UPI00145592764.540e-742.42uncharacterized protein LOC117293120 n=1 Tax=Aster... [more]
A0A7S3LW85_9EUKA4.020e-636.49Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
UPI0018D7794E4.060e-640.91polycystin-1-like n=2 Tax=Patiria miniata TaxID=46... [more]
UPI0009E62BFB3.640e-537.50uncharacterized protein LOC110048087 n=1 Tax=Orbic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109379contigM-pyrifera_M_contig109379:9..224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog164328.Phyra82804
Hectar predicted targeting categoryother localisation
EggNOG free text desc.REJ domain
EggNOG OGs2CZH5@1,2SACB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.7897248-CDS-M-pyrifera_M_contig109379:8..2241622815603.7897248-CDS-M-pyrifera_M_contig109379:8..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109379 9..224 -
1692277483.3427165-CDS-M-pyrifera_M_contig109379:8..2241692277483.3427165-CDS-M-pyrifera_M_contig109379:8..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109379 9..224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109379.1956.1prot_M-pyrifera_M_contig109379.1956.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109379 9..224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109379.1956.1

>prot_M-pyrifera_M_contig109379.1956.1 ID=prot_M-pyrifera_M_contig109379.1956.1|Name=mRNA_M-pyrifera_M_contig109379.1956.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
LTPGAEYVLRIEARDPRFPGQFGNGSALVSMLANAPPRPGTLSIQPKVGT
ALSTEFKVTTSGWIDEQIPLQF
back to top

mRNA from alignment at M-pyrifera_M_contig109379:9..224-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109379.1956.1 ID=mRNA_M-pyrifera_M_contig109379.1956.1|Name=mRNA_M-pyrifera_M_contig109379.1956.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig109379:9..224- (Macrocystis pyrifera P11B4 male)
TTAACTCCTGGCGCAGAATATGTGCTTCGGATAGAAGCAAGAGATCCTCG TTTCCCTGGACAGTTTGGGAATGGTTCAGCTCTCGTATCCATGCTTGCCA ATGCACCACCAAGACCTGGAACGTTGTCAATCCAACCCAAAGTTGGAACA GCTCTTTCGACAGAGTTCAAAGTCACAACTTCGGGATGGATTGATGAGCA AATTCCACTTCAATTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109379:9..224-

>mRNA_M-pyrifera_M_contig109379.1956.1 ID=mRNA_M-pyrifera_M_contig109379.1956.1|Name=mRNA_M-pyrifera_M_contig109379.1956.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig109379:9..224- (Macrocystis pyrifera P11B4 male)
TTAACTCCTGGCGCAGAATATGTGCTTCGGATAGAAGCAAGAGATCCTCG
TTTCCCTGGACAGTTTGGGAATGGTTCAGCTCTCGTATCCATGCTTGCCA
ATGCACCACCAAGACCTGGAACGTTGTCAATCCAACCCAAAGTTGGAACA
GCTCTTTCGACAGAGTTCAAAGTCACAACTTCGGGATGGATTGATGAGCA
AATTCCACTTCAATTTTTAACTCCTGGCGCAGAATATGTGCTTCGGATAG
AAGCAAGAGATCCTCGTTTCCCTGGACAGTTTGGGAATGGTTCAGCTCTC
GTATCCATGCTTGCCAATGCACCACCAAGACCTGGAACGTTGTCAATCCA
ACCCAAAGTTGGAACAGCTCTTTCGACAGAGTTCAAAGTCACAACTTCGG
GATGGATTGATGAGCAAATTCCACTTCAATTT
back to top