mRNA_M-pyrifera_M_contig83611.19531.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83611.19531.1
Unique NamemRNA_M-pyrifera_M_contig83611.19531.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83611.19531.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.510e-13
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 ILFLPCAHQCTCERCGGGYLGKPCIICRTPVEIVQKVIK 117
            ILFLPCAHQCTC RCG  Y GKPCI+CR  V+ VQ+VIK
Sbjct:  977 ILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIK 1015
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BLAST of mRNA_M-pyrifera_M_contig83611.19531.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.900e-12
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 ILFLPCAHQCTCERCGGGYLGKPCIICRTPVEIVQKVIK 117
            ILFLPCAH CTC RCG  Y GKPCI+CR  V+ VQ+VIK
Sbjct:  319 ILFLPCAHHCTCSRCGSAYEGKPCILCRRVVDKVQRVIK 357
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BLAST of mRNA_M-pyrifera_M_contig83611.19531.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.930e-12
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 ILFLPCAHQCTCERCGGGYLGKPCIICRTPVEIVQKVIK 117
            ILFLPCAHQCTC RCG G++GKPCIICR  V   Q VI+
Sbjct: 1033 ILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIR 1071
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83611.19531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FX21_ECTSI4.510e-1374.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKP4_9PHAE1.900e-1271.79RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J8V2_9PHAE2.930e-1271.79RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83611contigM-pyrifera_M_contig83611:151..276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.816132-CDS-M-pyrifera_M_contig83611:150..2761622816743.816132-CDS-M-pyrifera_M_contig83611:150..276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83611 151..276 +
1692278152.3334525-CDS-M-pyrifera_M_contig83611:150..2761692278152.3334525-CDS-M-pyrifera_M_contig83611:150..276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83611 151..276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83611.19531.1prot_M-pyrifera_M_contig83611.19531.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83611 151..276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83611.19531.1

>prot_M-pyrifera_M_contig83611.19531.1 ID=prot_M-pyrifera_M_contig83611.19531.1|Name=mRNA_M-pyrifera_M_contig83611.19531.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
ILFLPCAHQCTCERCGGGYLGKPCIICRTPVEIVQKVIKHW*
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mRNA from alignment at M-pyrifera_M_contig83611:151..276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83611.19531.1 ID=mRNA_M-pyrifera_M_contig83611.19531.1|Name=mRNA_M-pyrifera_M_contig83611.19531.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig83611:151..276+ (Macrocystis pyrifera P11B4 male)
ATCCTGTTCCTTCCTTGCGCCCACCAATGCACGTGCGAGCGGTGCGGGGG
AGGTTATCTGGGGAAGCCTTGCATCATATGCCGGACCCCGGTGGAAATTG
TGCAGAAGGTTATCAAGCATTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83611:151..276+

>mRNA_M-pyrifera_M_contig83611.19531.1 ID=mRNA_M-pyrifera_M_contig83611.19531.1|Name=mRNA_M-pyrifera_M_contig83611.19531.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig83611:151..276+ (Macrocystis pyrifera P11B4 male)
ATCCTGTTCCTTCCTTGCGCCCACCAATGCACGTGCGAGCGGTGCGGGGG
AGGTTATCTGGGGAAGCCTTGCATCATATGCCGGACCCCGGTGGAAATTG
TGCAGAAGGTTATCAAGCATTGGTGAATCCTGTTCCTTCCTTGCGCCCAC
CAATGCACGTGCGAGCGGTGCGGGGGAGGTTATCTGGGGAAGCCTTGCAT
CATATGCCGGACCCCGGTGGAAATTGTGCAGAAGGTTATCAAGCATTGGT
GA
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