mRNA_M-pyrifera_M_contig83562.19517.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83562.19517.1
Unique NamemRNA_M-pyrifera_M_contig83562.19517.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83562.19517.1 vs. uniprot
Match: M2Y148_GALSU (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y148_GALSU)

HSP 1 Score: 55.1 bits (131), Expect = 4.650e-6
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:    1 DREKITDLALIPAVIVNERLHRMFKDEYVVLTEIPKTSDYSAEWGASFYLWSVDPRTAQNRLQTELCRTIK 213
            ++ ++ + A++P     E+L+ MF+D YVV+ EIP +SDY +    SF+LWSVD     N     LC   K
Sbjct:  367 EQRQLLEFAMLPGTTAREKLYAMFRDGYVVVNEIPSSSDYKSS--RSFFLWSVD---VSNVFTNVLCHAYK 432
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BLAST of mRNA_M-pyrifera_M_contig83562.19517.1 vs. uniprot
Match: A0A7I8W2R5_9ANNE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W2R5_9ANNE)

HSP 1 Score: 53.9 bits (128), Expect = 1.170e-5
Identity = 30/98 (30.61%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    1 DREKITDLALIPAVIVNERLHRMFKDEYVVLTEIPKTSDYSAEWGASFYLWSVDPRTAQNRLQTELCRTIKRFLQRQKFYYEENKMLLARVAECKAVS 294
            +++KI D  +IPA    E L+RM + +YV +TE+PKTSD++    ++FYL+SV+      +L+      +     R+    +++K LL + ++ +A++
Sbjct:  347 EQQKIEDCVMIPAKEAKELLYRMVEQQYVSVTEVPKTSDHAPR--STFYLFSVNIDALARKLEENCYMILGNLYSRRDHEGKKSKRLLEKQSKIEAIA 442
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83562.19517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
M2Y148_GALSU4.650e-638.03DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A7I8W2R5_9ANNE1.170e-530.61DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83562contigM-pyrifera_M_contig83562:75..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score70.5
Seed ortholog evalue7.3e-10
Seed eggNOG ortholog10090.ENSMUSP00000029741
Preferred namePOLR3C
KEGG rclassRC02795
KEGG koko:K03023
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006359,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051240,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.transcription by RNA polymerase III
EggNOG OGs35IWB@314146,38F2V@33154,3BF6E@33208,3D0CE@33213,3JEJI@40674,47Z7K@7711,4975U@7742,4Q4ZT@9989,KOG2587@1,KOG2587@2759
COG Functional cat.K
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Exons2
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.0842261-CDS-M-pyrifera_M_contig83562:74..3081622816743.0842261-CDS-M-pyrifera_M_contig83562:74..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83562 75..308 +
1692278151.8465378-CDS-M-pyrifera_M_contig83562:74..3081692278151.8465378-CDS-M-pyrifera_M_contig83562:74..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83562 75..308 +
1622816743.0955925-CDS-M-pyrifera_M_contig83562:365..5571622816743.0955925-CDS-M-pyrifera_M_contig83562:365..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83562 366..557 +
1692278151.8598878-CDS-M-pyrifera_M_contig83562:365..5571692278151.8598878-CDS-M-pyrifera_M_contig83562:365..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83562 366..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83562.19517.1prot_M-pyrifera_M_contig83562.19517.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83562 75..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83562.19517.1

>prot_M-pyrifera_M_contig83562.19517.1 ID=prot_M-pyrifera_M_contig83562.19517.1|Name=mRNA_M-pyrifera_M_contig83562.19517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
DREKITDLALIPAVIVNERLHRMFKDEYVVLTEIPKTSDYSAEWGASFYL
WSVDPRTAQNRLQTELCRTIKRFLQRQKFYYEENKMLLARVAECKAVSEV
AFEEGLTANEREEWEKFKKRDRALQASTIQLMNTYTRLEWY*
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mRNA from alignment at M-pyrifera_M_contig83562:75..557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83562.19517.1 ID=mRNA_M-pyrifera_M_contig83562.19517.1|Name=mRNA_M-pyrifera_M_contig83562.19517.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig83562:75..557+ (Macrocystis pyrifera P11B4 male)
GACCGGGAGAAGATCACAGACTTGGCACTCATTCCTGCTGTGATAGTGAA
CGAGAGGTTGCACAGGATGTTCAAGGACGAGTACGTGGTGCTCACAGAGA
TCCCCAAGACGTCTGACTACTCGGCCGAGTGGGGCGCATCCTTTTACCTA
TGGTCAGTGGACCCACGCACTGCCCAGAATCGGCTGCAGACTGAGCTGTG
CCGCACCATCAAGCGGTTTCTGCAGCGCCAGAAGGTGAGGCTGGCGTGGC
CCCTCCTCGTGGCTGTGAAGGCGGAGGCTGACACTGTACAGTTTTACTAT
GAAGAGAACAAGATGCTGCTGGCGAGGGTGGCAGAGTGCAAGGCCGTCAG
CGAGGTGGCGTTCGAGGAGGGCCTCACTGCGAACGAAAGGGAAGAGTGGG
AGAAGTTCAAGAAGCGGGACCGGGCTCTGCAGGCGAGCACCATCCAGCTC
ATGAACACCTACACGCGGCTAGAGTGGTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83562:75..557+

>mRNA_M-pyrifera_M_contig83562.19517.1 ID=mRNA_M-pyrifera_M_contig83562.19517.1|Name=mRNA_M-pyrifera_M_contig83562.19517.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig83562:75..557+ (Macrocystis pyrifera P11B4 male)
GACCGGGAGAAGATCACAGACTTGGCACTCATTCCTGCTGTGATAGTGAA
CGAGAGGTTGCACAGGATGTTCAAGGACGAGTACGTGGTGCTCACAGAGA
TCCCCAAGACGTCTGACTACTCGGCCGAGTGGGGCGCATCCTTTTACCTA
TGGTCAGTGGACCCACGCACTGCCCAGAATCGGCTGCAGACTGAGCTGTG
CCGCACCATCAAGCGGTTTCTGCAGCGCCAGAAGGACCGGGAGAAGATCA
CAGACTTGGCACTCATTCCTGCTGTGATAGTGAACGAGAGGTTGCACAGG
ATGTTCAAGGACGAGTACGTGGTGCTCACAGAGATCCCCAAGACGTCTGA
CTACTCGGCCGAGTGGGGCGCATCCTTTTACCTATGGTCAGTGGACCCAC
GCACTGCCCAGAATCGGCTGCAGACTGAGCTGTGCCGCACCATCAAGCGG
TTTCTGCAGCGCCAGAAGTTTTACTATGAAGAGAACAAGATGCTGCTGGC
GAGGGTGGCAGAGTGCAAGGCCGTCAGCGAGGTGGCGTTCGAGGAGGGCC
TCACTGCGAACGAAAGGGAAGAGTGGGAGAAGTTCAAGAAGCGGGACCGG
GCTCTGCAGGCGAGCACCATCCAGCTCATGAACACCTACACGCGGCTAGA
GTGGTACTGATTTTACTATGAAGAGAACAAGATGCTGCTGGCGAGGGTGG
CAGAGTGCAAGGCCGTCAGCGAGGTGGCGTTCGAGGAGGGCCTCACTGCG
AACGAAAGGGAAGAGTGGGAGAAGTTCAAGAAGCGGGACCGGGCTCTGCA
GGCGAGCACCATCCAGCTCATGAACACCTACACGCGGCTAGAGTGGTACT
GA
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