prot_M-pyrifera_M_contig83562.19517.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig83562.19517.1
Unique Nameprot_M-pyrifera_M_contig83562.19517.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length142
Homology
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BLAST of mRNA_M-pyrifera_M_contig83562.19517.1 vs. uniprot
Match: M2Y148_GALSU (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y148_GALSU)

HSP 1 Score: 55.1 bits (131), Expect = 4.650e-6
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0 
Query:    1 DREKITDLALIPAVIVNERLHRMFKDEYVVLTEIPKTSDYSAEWGASFYLWSVDPRTAQNRLQTELCRTIK 71
            ++ ++ + A++P     E+L+ MF+D YVV+ EIP +SDY +    SF+LWSVD     N     LC   K
Sbjct:  367 EQRQLLEFAMLPGTTAREKLYAMFRDGYVVVNEIPSSSDYKSS--RSFFLWSVD---VSNVFTNVLCHAYK 432
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BLAST of mRNA_M-pyrifera_M_contig83562.19517.1 vs. uniprot
Match: A0A7I8W2R5_9ANNE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W2R5_9ANNE)

HSP 1 Score: 53.9 bits (128), Expect = 1.170e-5
Identity = 30/98 (30.61%), Postives = 58/98 (59.18%), Query Frame = 0 
Query:    1 DREKITDLALIPAVIVNERLHRMFKDEYVVLTEIPKTSDYSAEWGASFYLWSVDPRTAQNRLQTELCRTIKRFLQRQKFYYEENKMLLARVAECKAVS 98
            +++KI D  +IPA    E L+RM + +YV +TE+PKTSD++    ++FYL+SV+      +L+      +     R+    +++K LL + ++ +A++
Sbjct:  347 EQQKIEDCVMIPAKEAKELLYRMVEQQYVSVTEVPKTSDHAPR--STFYLFSVNIDALARKLEENCYMILGNLYSRRDHEGKKSKRLLEKQSKIEAIA 442
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83562.19517.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
M2Y148_GALSU4.650e-638.03DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A7I8W2R5_9ANNE1.170e-530.61DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..54
e-value: 4.6E-9
score: 38.0
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 2..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83562contigM-pyrifera_M_contig83562:75..557 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83562.19517.1mRNA_M-pyrifera_M_contig83562.19517.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig83562 75..557 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig83562.19517.1 ID=prot_M-pyrifera_M_contig83562.19517.1|Name=mRNA_M-pyrifera_M_contig83562.19517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
DREKITDLALIPAVIVNERLHRMFKDEYVVLTEIPKTSDYSAEWGASFYL
WSVDPRTAQNRLQTELCRTIKRFLQRQKFYYEENKMLLARVAECKAVSEV
AFEEGLTANEREEWEKFKKRDRALQASTIQLMNTYTRLEWY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR039748RPC3