mRNA_M-pyrifera_M_contig83556.19516.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83556.19516.1
Unique NamemRNA_M-pyrifera_M_contig83556.19516.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: A0A6I8LJU0_9PSEU (Mobile element protein n=2 Tax=Amycolatopsis TaxID=1813 RepID=A0A6I8LJU0_9PSEU)

HSP 1 Score: 55.1 bits (131), Expect = 8.190e-7
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1
Query:  127 MPTMTEPDNGVTVGADTHADTHVGAVLDPLGRLLATNEFAADHAGYEA 270
            M TMT P   VTVG DTH +THV   LD +GR+LA   F AD  GY +
Sbjct:    1 MSTMTNPGAHVTVGVDTHLETHVAVALDQVGRVLAQQSFPADPPGYRS 48          
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: A0A7K2BBM2_9ACTN (IS110 family transposase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2BBM2_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 2.260e-6
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  166 GADTHADTHVGAVLDPLGRLLATNEFAADHAGY 264
            GADTH DTHVGAV+D  GRLL + +F  D AGY
Sbjct:    4 GADTHRDTHVGAVVDSTGRLLGSAQFRTDTAGY 36          
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: UPI001CC2FE22 (IS110 family transposase n=5 Tax=Microbispora TaxID=2005 RepID=UPI001CC2FE22)

HSP 1 Score: 53.5 bits (127), Expect = 2.900e-6
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query:  148 DNGVTVGADTHADTHVGAVLDPLGRLLATNEFAADHAGYEA 270
            D  V  G DTH DTH  AV+DP+GR+L T +F AD AGY A
Sbjct:   11 DFEVAGGVDTHQDTHTAAVIDPIGRVLGTEQFPADPAGYAA 51          
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: UPI00137723A9 (IS110 family transposase n=1 Tax=Micromonospora rubida TaxID=2697657 RepID=UPI00137723A9)

HSP 1 Score: 53.1 bits (126), Expect = 3.960e-6
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  157 VTVGADTHADTHVGAVLDPLGRLLATNEFAADHAGYEA 270
            VT G DTH DTH  AVLDP+GR+L T +F A  AGY A
Sbjct:   14 VTGGVDTHLDTHTAAVLDPIGRVLGTQQFPATAAGYAA 51          
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: A0A239HRF9_9ACTN (Transposase n=2 Tax=Actinomadura mexicana TaxID=134959 RepID=A0A239HRF9_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 4.830e-6
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1
Query:  166 GADTHADTHVGAVLDPLGRLLATNEFAADHAGYEA 270
            G DTH DTH  AV+D +GR+L T +F AD AGY A
Sbjct:   16 GVDTHQDTHTAAVIDQVGRVLGTEQFPADAAGYAA 50          
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: A0A4R6J6H8_9ACTN (Transposase n=1 Tax=Actinoplanes brasiliensis TaxID=52695 RepID=A0A4R6J6H8_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 5.400e-6
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:  127 MPTMTEPDNGVTV--GADTHADTHVGAVLDPLGRLLATNEFAADHAGYEA 270
            MP++T  +  + V  G DTH DTH  AV+D +GR+L T +F AD AGY A
Sbjct:    1 MPSITPDEAAIDVFGGVDTHQDTHTAAVIDQIGRVLGTQQFPADAAGYTA 50          
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: A0A5N8VSP4_9ACTN (IS110 family transposase n=1 Tax=Streptomyces adustus TaxID=1609272 RepID=A0A5N8VSP4_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 5.430e-6
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1
Query:  145 PDNG-VTVGADTHADTHVGAVLDPLGRLLATNEFAADHAGY 264
            PD+G V +G DTH DTHV AVL PLG +LAT+ F A  AGY
Sbjct:   12 PDDGEVILGVDTHKDTHVAAVLTPLGAILATDAFPATSAGY 52          
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: A0A8J4E5F8_9ACTN (IS110 family transposase n=1 Tax=Virgisporangium aurantiacum TaxID=175570 RepID=A0A8J4E5F8_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 7.400e-6
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  157 VTVGADTHADTHVGAVLDPLGRLLATNEFAADHAGYEA 270
            VT G DTH DTH  AV+DP+GR+L T +F A  AGY A
Sbjct:   14 VTGGVDTHQDTHTAAVIDPIGRVLGTQQFPATAAGYAA 51          
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: A0A7W3R709_9ACTN (Transposase n=4 Tax=Thermomonosporaceae TaxID=2012 RepID=A0A7W3R709_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 7.400e-6
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:  127 MPTMTEPDNG--VTVGADTHADTHVGAVLDPLGRLLATNEFAADHAGYEA 270
            MP++T       VT G DTH DTH  AV+D +GR+L T +F AD AGY A
Sbjct:    1 MPSITPQQQAFEVTGGVDTHQDTHTAAVIDQVGRVLGTEQFPADAAGYTA 50          
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Match: UPI00117E58FD (IS110 family transposase n=2 Tax=Streptosporangiaceae TaxID=2004 RepID=UPI00117E58FD)

HSP 1 Score: 52.0 bits (123), Expect = 1.020e-5
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  124 AMPTMTEPDNGVTVGADTHADTHVGAVLDPLGRLLATNEFAADHAGYEA 270
            A PT  + D+ + +G DTHADTHV AV+  LGRL+AT  F    AGY A
Sbjct:    6 AEPTRVD-DDEIVLGVDTHADTHVAAVVTTLGRLMATRSFPTTAAGYTA 53          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83556.19516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6I8LJU0_9PSEU8.190e-754.17Mobile element protein n=2 Tax=Amycolatopsis TaxID... [more]
A0A7K2BBM2_9ACTN2.260e-666.67IS110 family transposase n=1 Tax=Acidimicrobiia ba... [more]
UPI001CC2FE222.900e-658.54IS110 family transposase n=5 Tax=Microbispora TaxI... [more]
UPI00137723A93.960e-663.16IS110 family transposase n=1 Tax=Micromonospora ru... [more]
A0A239HRF9_9ACTN4.830e-660.00Transposase n=2 Tax=Actinomadura mexicana TaxID=13... [more]
A0A4R6J6H8_9ACTN5.400e-650.00Transposase n=1 Tax=Actinoplanes brasiliensis TaxI... [more]
A0A5N8VSP4_9ACTN5.430e-663.41IS110 family transposase n=1 Tax=Streptomyces adus... [more]
A0A8J4E5F8_9ACTN7.400e-660.53IS110 family transposase n=1 Tax=Virgisporangium a... [more]
A0A7W3R709_9ACTN7.400e-652.00Transposase n=4 Tax=Thermomonosporaceae TaxID=2012... [more]
UPI00117E58FD1.020e-553.06IS110 family transposase n=2 Tax=Streptosporangiac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83556contigM-pyrifera_M_contig83556:614..883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size270
Cds size144
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.0262728-UTR-M-pyrifera_M_contig83556:613..7391622816743.0262728-UTR-M-pyrifera_M_contig83556:613..739Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83556 614..739 +
1692278151.8249927-UTR-M-pyrifera_M_contig83556:613..7391692278151.8249927-UTR-M-pyrifera_M_contig83556:613..739Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83556 614..739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.04117-CDS-M-pyrifera_M_contig83556:739..8831622816743.04117-CDS-M-pyrifera_M_contig83556:739..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83556 740..883 +
1692278151.8352706-CDS-M-pyrifera_M_contig83556:739..8831692278151.8352706-CDS-M-pyrifera_M_contig83556:739..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83556 740..883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83556.19516.1prot_M-pyrifera_M_contig83556.19516.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83556 740..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83556.19516.1

>prot_M-pyrifera_M_contig83556.19516.1 ID=prot_M-pyrifera_M_contig83556.19516.1|Name=mRNA_M-pyrifera_M_contig83556.19516.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
MPTMTEPDNGVTVGADTHADTHVGAVLDPLGRLLATNEFAADHAGYEA
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mRNA from alignment at M-pyrifera_M_contig83556:614..883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83556.19516.1 ID=mRNA_M-pyrifera_M_contig83556.19516.1|Name=mRNA_M-pyrifera_M_contig83556.19516.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig83556:614..883+ (Macrocystis pyrifera P11B4 male)
GGGCCTCGTGCACGTCTCGATCGTGAACGTGACCTGATAGGAGCCTGGCC AGAGGCCCCATCACAGTGCTGTCCGTGATCCTTCGGTGCGTGCCAACCCA CAACCCAACAAAGGAAAGGGTCAGCCATGCCCACAATGACAGAACCCGAC AACGGAGTCACGGTCGGGGCAGACACCCACGCCGACACTCACGTCGGAGC AGTCCTGGACCCGCTCGGCCGGCTCCTCGCCACCAACGAGTTCGCTGCAG ACCATGCCGGCTATGAAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83556:614..883+

>mRNA_M-pyrifera_M_contig83556.19516.1 ID=mRNA_M-pyrifera_M_contig83556.19516.1|Name=mRNA_M-pyrifera_M_contig83556.19516.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig83556:614..883+ (Macrocystis pyrifera P11B4 male)
ATGCCCACAATGACAGAACCCGACAACGGAGTCACGGTCGGGGCAGACAC
CCACGCCGACACTCACGTCGGAGCAGTCCTGGACCCGCTCGGCCGGCTCC
TCGCCACCAACGAGTTCGCTGCAGACCATGCCGGCTATGAAGCGATGCCC
ACAATGACAGAACCCGACAACGGAGTCACGGTCGGGGCAGACACCCACGC
CGACACTCACGTCGGAGCAGTCCTGGACCCGCTCGGCCGGCTCCTCGCCA
CCAACGAGTTCGCTGCAGACCATGCCGGCTATGAAGCG
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