mRNA_M-pyrifera_M_contig83506.19507.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83506.19507.1
Unique NamemRNA_M-pyrifera_M_contig83506.19507.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A5B9MGW5_9BACT (Nickel-containing superoxide dismutase n=4 Tax=Planctomycetes TaxID=203682 RepID=A0A5B9MGW5_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-10
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHFE 105
            AMKC Q  DP+TA  L+KAIFDLYRAYEGKEP FE
Sbjct:  116 AMKCKQSADPETAKVLEKAIFDLYRAYEGKEPAFE 150
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BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A517ZH90_9PLAN (Nickel-containing superoxide dismutase n=2 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZH90_9PLAN)

HSP 1 Score: 59.7 bits (143), Expect = 4.300e-10
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHFE 105
            AMKC Q VDPK A +L+KAI+D YRAYEGKEP FE
Sbjct:  119 AMKCKQTVDPKVAESLEKAIYDFYRAYEGKEPDFE 153
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BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A255R7R1_9BACT (Uncharacterized protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A255R7R1_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 6.060e-10
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHFE 105
            AMKC Q  DP TA  L+KAIFD YRAYEGKEP FE
Sbjct:  117 AMKCKQSADPATAKALEKAIFDFYRAYEGKEPDFE 151
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BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A5B9QPY4_9BACT (Nickel-containing superoxide dismutase n=1 Tax=Roseimaritima ulvae TaxID=980254 RepID=A0A5B9QPY4_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 6.620e-10
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHFE 105
            AMKC Q  DP TA  L+K+IFDLYRAYEGKEP FE
Sbjct:  122 AMKCKQSADPATAKALEKSIFDLYRAYEGKEPAFE 156
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BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A517NC16_9BACT (Nickel-containing superoxide dismutase n=2 Tax=Rubripirellula lacrimiformis TaxID=1930273 RepID=A0A517NC16_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 9.320e-10
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHFE 105
            AMKC Q  DP TA  L+K+IFDLYRAYEGKEP FE
Sbjct:  122 AMKCKQSADPATAAGLEKSIFDLYRAYEGKEPTFE 156
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BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A7Y2ALH4_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2ALH4_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.180e-9
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHFE 105
            AMKC Q  DP TA  L+K+IFDLYRAYEGKEP F+
Sbjct:  116 AMKCKQSADPDTAKALEKSIFDLYRAYEGKEPDFD 150
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BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A5M6DLI2_9BACT (Uncharacterized protein n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6DLI2_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.180e-9
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHFE 105
            AMKC Q  DP TA  L+KAIFD YRAYEGKEP FE
Sbjct:  116 AMKCKQSADPATAEDLEKAIFDFYRAYEGKEPAFE 150
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BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A517QI89_9PLAN (Nickel-containing superoxide dismutase n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QI89_9PLAN)

HSP 1 Score: 58.5 bits (140), Expect = 1.200e-9
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHF 102
            AMK  QGVDPK+A +L+KAI DLYRAYEGKEP F
Sbjct:  116 AMKTKQGVDPKSAQSLRKAILDLYRAYEGKEPKF 149
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BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A2E7EHY8_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7EHY8_9PLAN)

HSP 1 Score: 57.4 bits (137), Expect = 3.300e-9
Identity = 25/35 (71.43%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHFE 105
            AMKC Q VDP TA TL+ AI D YRAYEGKEP  E
Sbjct:  118 AMKCKQSVDPATAATLRSAILDFYRAYEGKEPQIE 152
[Close]
BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Match: A0A1Z9QMA8_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetia TaxID=203683 RepID=A0A1Z9QMA8_9PLAN)

HSP 1 Score: 57.0 bits (136), Expect = 4.650e-9
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 AMKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHF 102
            AMKC Q  DP TA  L+K IFDLYRAYEGKEP F
Sbjct:  116 AMKCKQSADPATAEMLEKKIFDLYRAYEGKEPDF 149
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83506.19507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A5B9MGW5_9BACT1.070e-1077.14Nickel-containing superoxide dismutase n=4 Tax=Pla... [more]
A0A517ZH90_9PLAN4.300e-1074.29Nickel-containing superoxide dismutase n=2 Tax=Sym... [more]
A0A255R7R1_9BACT6.060e-1074.29Uncharacterized protein n=2 Tax=Pirellulaceae TaxI... [more]
A0A5B9QPY4_9BACT6.620e-1074.29Nickel-containing superoxide dismutase n=1 Tax=Ros... [more]
A0A517NC16_9BACT9.320e-1074.29Nickel-containing superoxide dismutase n=2 Tax=Rub... [more]
A0A7Y2ALH4_9BACT1.180e-971.43Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A5M6DLI2_9BACT1.180e-974.29Uncharacterized protein n=1 Tax=Roseiconus nitrati... [more]
A0A517QI89_9PLAN1.200e-976.47Nickel-containing superoxide dismutase n=1 Tax=Tha... [more]
A0A2E7EHY8_9PLAN3.300e-971.43Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A1Z9QMA8_9PLAN4.650e-973.53Uncharacterized protein n=4 Tax=Planctomycetia Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83506contigM-pyrifera_M_contig83506:779..889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size108
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.544427-CDS-M-pyrifera_M_contig83506:778..8861622816742.544427-CDS-M-pyrifera_M_contig83506:778..886Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83506 779..886 -
1692278151.4954681-CDS-M-pyrifera_M_contig83506:778..8861692278151.4954681-CDS-M-pyrifera_M_contig83506:778..886Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83506 779..886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.5565228-UTR-M-pyrifera_M_contig83506:886..8891622816742.5565228-UTR-M-pyrifera_M_contig83506:886..889Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83506 887..889 -
1692278151.5070033-UTR-M-pyrifera_M_contig83506:886..8891692278151.5070033-UTR-M-pyrifera_M_contig83506:886..889Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83506 887..889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83506.19507.1prot_M-pyrifera_M_contig83506.19507.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83506 779..886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83506.19507.1

>prot_M-pyrifera_M_contig83506.19507.1 ID=prot_M-pyrifera_M_contig83506.19507.1|Name=mRNA_M-pyrifera_M_contig83506.19507.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
MKCTQGVDPKTATTLKKAIFDLYRAYEGKEPHFEE*
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mRNA from alignment at M-pyrifera_M_contig83506:779..889-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83506.19507.1 ID=mRNA_M-pyrifera_M_contig83506.19507.1|Name=mRNA_M-pyrifera_M_contig83506.19507.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=111bp|location=Sequence derived from alignment at M-pyrifera_M_contig83506:779..889- (Macrocystis pyrifera P11B4 male)
GCGATGAAATGCACGCAGGGCGTGGACCCGAAAACTGCAACGACACTTAA
GAAGGCAATCTTCGACTTGTATCGAGCCTACGAAGGCAAAGAGCCCCATT
TCGAAGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83506:779..889-

>mRNA_M-pyrifera_M_contig83506.19507.1 ID=mRNA_M-pyrifera_M_contig83506.19507.1|Name=mRNA_M-pyrifera_M_contig83506.19507.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig83506:779..889- (Macrocystis pyrifera P11B4 male)
ATGAAATGCACGCAGGGCGTGGACCCGAAAACTGCAACGACACTTAAGAA
GGCAATCTTCGACTTGTATCGAGCCTACGAAGGCAAAGAGCCCCATTTCG
AAGAGTAGATGAAATGCACGCAGGGCGTGGACCCGAAAACTGCAACGACA
CTTAAGAAGGCAATCTTCGACTTGTATCGAGCCTACGAAGGCAAAGAGCC
CCATTTCGAAGAGTAG
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