mRNA_M-pyrifera_M_contig83443.19487.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83443.19487.1
Unique NamemRNA_M-pyrifera_M_contig83443.19487.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83443.19487.1 vs. uniprot
Match: A0A7C7P1E8_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7C7P1E8_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 2.350e-16
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    4 LLVDRATAITWSKTMARKGISPMKKVLDKLFGTGTRVAKQAFRAYQNWLERHPPLPIGDVLFK 192
            LLVDR TAI W+KTM  KGISPM K+LDK+F TG +VAK+AF+  ++ L R+P LP  DVL K
Sbjct:  124 LLVDRQTAIEWAKTMTWKGISPMVKILDKVFETGAKVAKKAFQLLRDRLHRNPLLPKWDVLIK 186
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BLAST of mRNA_M-pyrifera_M_contig83443.19487.1 vs. uniprot
Match: A0A0F8Z2B5_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8Z2B5_9ZZZZ)

HSP 1 Score: 49.3 bits (116), Expect = 3.560e-5
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 LLVDRATAITWSKTMARKGISPMKKVLDKLFGTGTRVAKQAFRAYQNWLERHPPLP 171
            LL    TA+ W+KTM  +G++P+  +LD+++ TG R++++AFR     LER   LP
Sbjct:  141 LLSTIETAVQWAKTMTWRGVAPIVHLLDRVYETGVRLSRRAFRPIAARLERSESLP 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83443.19487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C7P1E8_9BACT2.350e-1661.90Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A0F8Z2B5_9ZZZZ3.560e-541.07Uncharacterized protein n=1 Tax=marine sediment me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83443contigM-pyrifera_M_contig83443:398..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.4221368-CDS-M-pyrifera_M_contig83443:397..6221622816741.4221368-CDS-M-pyrifera_M_contig83443:397..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83443 398..622 +
1692278150.8198526-CDS-M-pyrifera_M_contig83443:397..6221692278150.8198526-CDS-M-pyrifera_M_contig83443:397..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83443 398..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83443.19487.1prot_M-pyrifera_M_contig83443.19487.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83443 398..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83443.19487.1

>prot_M-pyrifera_M_contig83443.19487.1 ID=prot_M-pyrifera_M_contig83443.19487.1|Name=mRNA_M-pyrifera_M_contig83443.19487.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
GLLVDRATAITWSKTMARKGISPMKKVLDKLFGTGTRVAKQAFRAYQNWL
ERHPPLPIGDVLFKLQPQDETPSR*
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mRNA from alignment at M-pyrifera_M_contig83443:398..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83443.19487.1 ID=mRNA_M-pyrifera_M_contig83443.19487.1|Name=mRNA_M-pyrifera_M_contig83443.19487.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig83443:398..622+ (Macrocystis pyrifera P11B4 male)
GGGCTGCTGGTCGATCGCGCGACTGCCATTACATGGTCAAAGACAATGGC
CCGGAAAGGGATCTCCCCAATGAAGAAGGTTCTCGACAAATTGTTCGGGA
CGGGGACCAGGGTTGCGAAACAGGCATTTCGAGCGTATCAGAATTGGCTC
GAGCGCCACCCACCTTTGCCAATAGGGGATGTCCTATTCAAACTCCAGCC
CCAAGATGAAACACCTTCGAGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83443:398..622+

>mRNA_M-pyrifera_M_contig83443.19487.1 ID=mRNA_M-pyrifera_M_contig83443.19487.1|Name=mRNA_M-pyrifera_M_contig83443.19487.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig83443:398..622+ (Macrocystis pyrifera P11B4 male)
GGGCTGCTGGTCGATCGCGCGACTGCCATTACATGGTCAAAGACAATGGC
CCGGAAAGGGATCTCCCCAATGAAGAAGGTTCTCGACAAATTGTTCGGGA
CGGGGACCAGGGTTGCGAAACAGGCATTTCGAGCGTATCAGAATTGGCTC
GAGCGCCACCCACCTTTGCCAATAGGGGATGTCCTATTCAAACTCCAGCC
CCAAGATGAAACACCTTCGAGATGAGGGCTGCTGGTCGATCGCGCGACTG
CCATTACATGGTCAAAGACAATGGCCCGGAAAGGGATCTCCCCAATGAAG
AAGGTTCTCGACAAATTGTTCGGGACGGGGACCAGGGTTGCGAAACAGGC
ATTTCGAGCGTATCAGAATTGGCTCGAGCGCCACCCACCTTTGCCAATAG
GGGATGTCCTATTCAAACTCCAGCCCCAAGATGAAACACCTTCGAGATGA
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