mRNA_M-pyrifera_M_contig83172.19426.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83172.19426.1
Unique NamemRNA_M-pyrifera_M_contig83172.19426.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: A0A3N9NIP3_9BACT (Response regulator (Fragment) n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3N9NIP3_9BACT)

HSP 1 Score: 145 bits (367), Expect = 2.910e-39
Identity = 75/141 (53.19%), Postives = 100/141 (70.92%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRYSK------SGIKLELP 405
            ILI++DN ++R Y++ +L   Y+ILE ENG EGL  A E +PD++I D+MMP+MDG E C+ LK D  T+ IP I+LTAKA++  KLEGL  G DDYI+KPFD EE++ R  NLI+ RKKL +RY K      +G K+ LP
Sbjct:  184 ILIVEDNTDLRKYISGNLLEQYQILEAENGREGLDKAIESIPDLVISDLMMPEMDGKEMCEFLKKDTRTNHIPVIMLTAKADRESKLEGLETGADDYIIKPFDAEELQVRVKNLIEQRKKLRERYRKEFLMDPAGHKIPLP 324          
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: UPI0004005902 (hybrid sensor histidine kinase/response regulator transcription factor n=1 Tax=Salisaeta longa TaxID=503170 RepID=UPI0004005902)

HSP 1 Score: 147 bits (371), Expect = 2.140e-38
Identity = 67/132 (50.76%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRYSKSGIKL 396
            +L+++D+ E+R+Y+  HL+  YR+LE  NG +GL+ A  HLPD+++ D+MMP+MDG E C+ALK+   TDFIP ILLTA+AE  D+++ L  GVDDY+ KPFD++E+KAR  NLI+SR++L +R+  + + L
Sbjct: 1164 VLLVEDSAEVRTYIRLHLAKEYRVLEAVNGRDGLEQARTHLPDLVLSDLMMPEMDGLELCQALKETRATDFIPVILLTARAEMYDRIDALQEGVDDYMTKPFDVDELKARISNLIRSRRQLRERFRDAPVSL 1295          
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: UPI001BC61986 (Response regulator n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=UPI001BC61986)

HSP 1 Score: 137 bits (346), Expect = 8.280e-38
Identity = 66/130 (50.77%), Postives = 94/130 (72.31%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRYSKSGI 390
            ILI++DN ++R+Y+ E +  +Y   E ++GL+GLK A+E +PD+II DVMMPKMDGYEFCKA++ D +T  IP I+LTAK+   DK+ GL  GVD Y+ KPF  +E+KA   NL+  R +L  ++SKS +
Sbjct:    8 ILIVEDNNDVRAYIREQIEDDYHTFEAQHGLQGLKMAQEKVPDLIISDVMMPKMDGYEFCKAIRKDEKTSHIPLIMLTAKSSLDDKISGLESGVDAYLTKPFSAKELKATVINLLHQRIQLRKQFSKSMV 137          
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: A0A1G0RUB0_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteria bacterium RBG_16_36_9 TaxID=1798435 RepID=A0A1G0RUB0_9BACT)

HSP 1 Score: 139 bits (349), Expect = 9.100e-38
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRYSKSGI 390
            +LI++DN ++R Y+  +L   + ILE  NG +GL  A  H+PD+II DVMMPKMDG+E C  LK+D  T  IP I+LTAKA + DK+EG   G D+YIMKPFD + ++AR  NLIQ R +L D +++ G+
Sbjct:   52 LLIVEDNADVRDYIKGNLKEEFIILEAANGEDGLNQAINHIPDLIISDVMMPKMDGFEMCDKLKNDERTSHIPVIMLTAKAAKQDKIEGFETGADEYIMKPFDAQVLRARIHNLIQQRNRLRDYFNREGV 181          
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: A0A1D8P6F4_9FLAO (Hybrid sensor histidine kinase/response regulator n=1 Tax=Urechidicola croceus TaxID=1850246 RepID=A0A1D8P6F4_9FLAO)

HSP 1 Score: 145 bits (366), Expect = 1.010e-37
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRY 375
            +L+++DN E+RSYL   L SNYRIL   NG EGLK A+ H PDIII DV+MP+MDG+EFCK +K+ +ET  IP ++LTAK    D++EG+GLG D Y++KPFD+  +K R   LI SRK + D+Y
Sbjct: 1144 LLLVEDNSELRSYLKNELKSNYRILTAVNGKEGLKQAKAHSPDIIITDVIMPEMDGFEFCKKIKESIETSHIPLLMLTAKTRIDDRIEGIGLGADAYMIKPFDMRLLKLRLSQLITSRKLIFDKY 1268          
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: A0A660Z5A9_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A660Z5A9_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.010e-37
Identity = 69/130 (53.08%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRYSKSGI 390
            +LIIDDN +IR+Y+  +L+ +YR LE  NG +GL  A EH+PD+I+ DVMMPKMDG+E C+ +K D  +  IP ILLTAKA + DK+EGL  G DD+IMKPF+ +E+K R  NLI+ RK++++ Y K  +
Sbjct: 1196 LLIIDDNPDIRNYVKGYLNKDYRTLEAGNGEDGLNKAFEHIPDLIVSDVMMPKMDGFELCEKVKTDERSSHIPVILLTAKATEQDKIEGLETGADDFIMKPFEAKELKVRVKNLIEQRKRIVEHYRKKQL 1325          
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: UPI001ABC7816 (response regulator n=1 Tax=Roseivirga sp. E12 TaxID=2819237 RepID=UPI001ABC7816)

HSP 1 Score: 145 bits (365), Expect = 1.370e-37
Identity = 69/135 (51.11%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRYSKSGIKLELP 405
            +L+++DN +IR+Y+ +HLS+ YR++E ENG EG +  +  LPD++I DVMMP  DGYE C+ +K   + DFIP ILLTAKAE+S K+EGL LG DDY++KPF+++E++AR  NLI SR+KL    + + I    P
Sbjct: 1147 LLVVEDNADIRTYVRKHLSTEYRVIEAENGQEGFQIVKAELPDLVISDVMMPISDGYELCRNIKQHPDLDFIPVILLTAKAEKSMKIEGLELGADDYVVKPFEVDELRARIKNLINSREKLKGILANTDITATTP 1281          
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: A0A660YXX2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A660YXX2_9BACT)

HSP 1 Score: 141 bits (355), Expect = 1.660e-37
Identity = 69/127 (54.33%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRYSK 381
            ILI+DD++++R YL+  L +NY I E ENG EG+ +A E++PD+II DVMMP MDG EFC+ +K D +T  IP ILLTAKA    K+EGL +G DDY+ KPFD +E+  R  NL++ RK+L D+Y+K
Sbjct:  185 ILIVDDSKDVRIYLSSLLETNYTISEAENGEEGILAATENMPDLIISDVMMPSMDGMEFCRRIKSDWQTSDIPVILLTAKASIESKIEGLEIGADDYLTKPFDSKELFTRIKNLLEQRKRLRDKYNK 311          
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: A0A7Y2DEK3_9FLAO (Response regulator n=1 Tax=Pricia sp. TaxID=2268138 RepID=A0A7Y2DEK3_9FLAO)

HSP 1 Score: 143 bits (360), Expect = 4.910e-37
Identity = 67/132 (50.76%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRYSKSGIKL 396
            +L+++DN+++R +LNEHL+ +YR+L   NGLEGLK A   +PD+II D+MMPK+DG E C  LK ++ T  IP I+LTAKA   +K+EGL  G DDY+ KPFD  E+  RT NLI+ R+KL +R++ +  K+
Sbjct:  489 VLLVEDNEDMRIFLNEHLTKHYRVLTAINGLEGLKKATARIPDLIITDLMMPKLDGIELCTKLKSEITTSHIPVIMLTAKAGLENKIEGLETGADDYLTKPFDARELLVRTSNLIEQRRKLRERFASTDAKV 620          
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Match: A0A7Y8J7C1_9BACT (DNA-binding response regulator n=1 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A7Y8J7C1_9BACT)

HSP 1 Score: 135 bits (340), Expect = 6.270e-37
Identity = 65/127 (51.18%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVMMPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMKPFDIEEVKARTDNLIQSRKKLMDRYSK 381
            IL+++DN ++R Y+ E LS +Y + E  NG +G++ AE  +PD+II D+MMPKMDG E  + LK+D  T  IP I+LTAK+ Q +KLEGL +G DDY+ KPFDI+E++ R +NLI  R+KL +++SK
Sbjct:    7 ILVVEDNYDMREYIKESLSDSYAVEEAVNGEQGVRIAETIIPDLIISDLMMPKMDGNELTRILKNDERTSHIPIIILTAKSGQENKLEGLQIGADDYLTKPFDIQELRVRVENLINIRRKLQEKFSK 133          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83172.19426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N9NIP3_9BACT2.910e-3953.19Response regulator (Fragment) n=1 Tax=Calditrichae... [more]
UPI00040059022.140e-3850.76hybrid sensor histidine kinase/response regulator ... [more]
UPI001BC619868.280e-3850.77Response regulator n=1 Tax=Bacteroidetes bacterium... [more]
A0A1G0RUB0_9BACT9.100e-3850.77Uncharacterized protein n=1 Tax=Ignavibacteria bac... [more]
A0A1D8P6F4_9FLAO1.010e-3755.20Hybrid sensor histidine kinase/response regulator ... [more]
A0A660Z5A9_9BACT1.010e-3753.08Uncharacterized protein n=1 Tax=Ignavibacteriae ba... [more]
UPI001ABC78161.370e-3751.11response regulator n=1 Tax=Roseivirga sp. E12 TaxI... [more]
A0A660YXX2_9BACT1.660e-3754.33Uncharacterized protein (Fragment) n=1 Tax=Ignavib... [more]
A0A7Y2DEK3_9FLAO4.910e-3750.76Response regulator n=1 Tax=Pricia sp. TaxID=226813... [more]
A0A7Y8J7C1_9BACT6.270e-3751.18DNA-binding response regulator n=1 Tax=Ignavibacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83172contigM-pyrifera_M_contig83172:26..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score152.1
Seed ortholog evalue1.8e-34
Seed eggNOG ortholog1089550.ATTH01000002_gene50
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helix_turn_helix, arabinose operon control protein
EggNOG OGs1FJSF@1100069,4P0IA@976,COG0745@1,COG0745@2,COG5002@1,COG5002@2
COG Functional cat.T
Best tax levelBacteroidetes Order II. Incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.5837414-CDS-M-pyrifera_M_contig83172:25..4331622816738.5837414-CDS-M-pyrifera_M_contig83172:25..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83172 26..433 +
1692278149.372746-CDS-M-pyrifera_M_contig83172:25..4331692278149.372746-CDS-M-pyrifera_M_contig83172:25..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83172 26..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83172.19426.1prot_M-pyrifera_M_contig83172.19426.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83172 26..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83172.19426.1

>prot_M-pyrifera_M_contig83172.19426.1 ID=prot_M-pyrifera_M_contig83172.19426.1|Name=mRNA_M-pyrifera_M_contig83172.19426.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
ILIIDDNQEIRSYLNEHLSSNYRILEEENGLEGLKSAEEHLPDIIICDVM
MPKMDGYEFCKALKDDLETDFIPDILLTAKAEQSDKLEGLGLGVDDYIMK
PFDIEEVKARTDNLIQSRKKLMDRYSKSGIKLELPI
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mRNA from alignment at M-pyrifera_M_contig83172:26..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83172.19426.1 ID=mRNA_M-pyrifera_M_contig83172.19426.1|Name=mRNA_M-pyrifera_M_contig83172.19426.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig83172:26..433+ (Macrocystis pyrifera P11B4 male)
ATTTTAATTATCGATGATAATCAAGAAATACGGTCCTACTTGAATGAACA TTTATCATCAAACTATAGAATATTAGAAGAAGAGAATGGGCTCGAAGGTT TGAAATCAGCAGAAGAGCATCTTCCAGATATTATAATTTGTGATGTGATG ATGCCTAAAATGGATGGATACGAGTTCTGTAAAGCTCTTAAAGACGATCT TGAGACAGATTTCATACCAGATATTTTACTAACTGCTAAAGCAGAGCAAA GTGATAAACTAGAAGGTTTAGGGCTTGGTGTCGATGACTATATTATGAAG CCTTTTGATATAGAAGAAGTAAAAGCTCGTACGGATAACTTGATTCAATC TAGGAAAAAATTGATGGATCGATATTCAAAATCAGGGATTAAATTAGAAT TACCAATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83172:26..433+

>mRNA_M-pyrifera_M_contig83172.19426.1 ID=mRNA_M-pyrifera_M_contig83172.19426.1|Name=mRNA_M-pyrifera_M_contig83172.19426.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig83172:26..433+ (Macrocystis pyrifera P11B4 male)
ATTTTAATTATCGATGATAATCAAGAAATACGGTCCTACTTGAATGAACA
TTTATCATCAAACTATAGAATATTAGAAGAAGAGAATGGGCTCGAAGGTT
TGAAATCAGCAGAAGAGCATCTTCCAGATATTATAATTTGTGATGTGATG
ATGCCTAAAATGGATGGATACGAGTTCTGTAAAGCTCTTAAAGACGATCT
TGAGACAGATTTCATACCAGATATTTTACTAACTGCTAAAGCAGAGCAAA
GTGATAAACTAGAAGGTTTAGGGCTTGGTGTCGATGACTATATTATGAAG
CCTTTTGATATAGAAGAAGTAAAAGCTCGTACGGATAACTTGATTCAATC
TAGGAAAAAATTGATGGATCGATATTCAAAATCAGGGATTAAATTAGAAT
TACCAATTATTTTAATTATCGATGATAATCAAGAAATACGGTCCTACTTG
AATGAACATTTATCATCAAACTATAGAATATTAGAAGAAGAGAATGGGCT
CGAAGGTTTGAAATCAGCAGAAGAGCATCTTCCAGATATTATAATTTGTG
ATGTGATGATGCCTAAAATGGATGGATACGAGTTCTGTAAAGCTCTTAAA
GACGATCTTGAGACAGATTTCATACCAGATATTTTACTAACTGCTAAAGC
AGAGCAAAGTGATAAACTAGAAGGTTTAGGGCTTGGTGTCGATGACTATA
TTATGAAGCCTTTTGATATAGAAGAAGTAAAAGCTCGTACGGATAACTTG
ATTCAATCTAGGAAAAAATTGATGGATCGATATTCAAAATCAGGGATTAA
ATTAGAATTACCAATT
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