mRNA_M-pyrifera_M_contig82808.19351.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82808.19351.1
Unique NamemRNA_M-pyrifera_M_contig82808.19351.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: A0A1I3ZMM6_9HYPH (Periplasmic serine endoprotease DegP-like n=1 Tax=Methylocapsa palsarum TaxID=1612308 RepID=A0A1I3ZMM6_9HYPH)

HSP 1 Score: 52.8 bits (125), Expect = 6.070e-6
Identity = 31/78 (39.74%), Postives = 42/78 (53.85%), Query Frame = 1
Query:    1 LGVRAVDASTEDQTRLGRPGLVGAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASPNAKHTIAYY 234
            +GV+    +TE    LG     GA V +   NSPA+EAGL+ G VI+ +D +RI G R L   V A  P  K  + Y+
Sbjct:  307 IGVQIQPVTTEVADSLGLKAAKGALVADAQANSPAAEAGLKSGDVILGIDGERIDGPRELARKVAALGPGKKADLIYW 384          
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: A0A2V2CG99_9FIRM (Peptidase S1 n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A2V2CG99_9FIRM)

HSP 1 Score: 52.4 bits (124), Expect = 8.220e-6
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 LGVRAVDASTEDQTRLGRPGLVGAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASPNAKHTIAYY 234
            +GV   + S+E Q +LG P   GAAV EVV +SPA  +GL+V  +I  ++   ITGS  L++TV++A+   + T++ Y
Sbjct:  330 VGVSVTNVSSESQ-QLGLP--QGAAVAEVVADSPAEASGLQVNDIITAVNGTAITGSTDLVNTVKSAAIGDELTLSVY 404          
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: A0A7V0U1E0_9PROT (Periplasmic serine endoprotease DegP-like n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7V0U1E0_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 1.130e-5
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 1
Query:    1 LGVRAVDASTEDQTRLGRPGLVGAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASPNAKHTIAYYDPSGSLVQTDVAL 273
            LGV   + + E     G     GA V+EVVE+SPAS +GL+VG +I+ +D ++I   R L   V A  P  K  +      G +V+T V L
Sbjct:  280 LGVHVQEVTEELAASFGLEEKSGAVVSEVVEDSPASRSGLQVGDIILEVDGEKIEEMRYLPRLVAAKKPGTKVELKLLR-QGKIVKTKVVL 369          
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: A0A3M1SV22_9BACT (PDZ domain-containing protein n=2 Tax=Acidobacteria TaxID=57723 RepID=A0A3M1SV22_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 1.800e-5
Identity = 25/70 (35.71%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 LGVRAVDASTEDQTRLGRPGLVGAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASPN 210
            LG++  D + ++ ++ G   + G AV +VVENSPA++AGL+ G VIV  +++ +T  R L   +   +P+
Sbjct:   35 LGIQMTDITKDNYSKYGLNSVQGVAVEKVVENSPAAQAGLKAGDVIVKFNNEEVTSVRKLKRLISEVAPD 104          
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: A0A3M2EXR1_9BACT (Do family serine endopeptidase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A3M2EXR1_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 2.130e-5
Identity = 31/78 (39.74%), Postives = 42/78 (53.85%), Query Frame = 1
Query:    1 LGVRAVDASTEDQTRLGRPGLVGAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASPNAKHTIAYY 234
            LGV   + + E + +LG P   GA VTEV E +PA EA LE G VIV  D Q+I  +  L++ V       K  + +Y
Sbjct:  353 LGVSIQNLNEELRKKLGLPDPQGALVTEVKEGTPADEAELEPGDVIVEWDGQKIRNTSQLLEAVSTTEIGRKVKVVFY 430          
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: A0A6N2DER5_9ACTN (PDZ domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DER5_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 2.790e-5
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   19 DASTEDQTRLG------RPGLVGAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASPNAKHTIA 228
            D +T D+  LG        G  G  V+EV  +SPA+ AGL++G ++V +DD  ITG+  L+ T+R  SP    TI+
Sbjct:  270 DGTTRDEGFLGVGLENRSDGGQGTIVSEVRSDSPAAAAGLQLGDIVVAIDDAEITGTLSLVATIRDRSPGDTITIS 345          
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: A0A7V0ZIA4_9BACT (DegQ family serine endoprotease n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7V0ZIA4_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.870e-5
Identity = 22/53 (41.51%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   67 GAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASPNAKHTI 225
            GA + +VV+NSPA +AG+E+G +I + D + ITGS  L + V +++P  ++T+
Sbjct:  283 GALIGDVVKNSPAEKAGIEIGDIITSFDSKNITGSSHLKNVVSSSTPGKRYTV 335          
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: A0A7T1F363_9BACT (Serine protease HtrA n=2 Tax=Atribacterota TaxID=67818 RepID=A0A7T1F363_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.870e-5
Identity = 25/69 (36.23%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 LGVRAVDASTEDQTRLGRPGLVGAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASP 207
            LGV   + + E   + G  G  GA V +V+EN PA++A  + G +I++++DQ IT ++ L +T+R+  P
Sbjct:  263 LGVYIQNVTPEIGKQFGYEGTTGALVADVIENGPAAKASFQRGDIILSVNDQEITDTKQLQNTIRSLKP 331          
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: A0A6J7IW74_9ZZZZ (Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A6J7IW74_9ZZZZ)

HSP 1 Score: 50.4 bits (119), Expect = 3.790e-5
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 1
Query:    1 LGVRAVDASTEDQTRLGRPGLVGAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASPNAKHTIAYYDPSGSLVQTDV 267
            LGV + D  +    RLGR G +   ++E+  + PA  AGLEVG V+V++DD  I+ +  L+  +R+       TI+Y       V T +
Sbjct:  265 LGVMSDDLDSITTARLGRSGTI---LSEISADGPADVAGLEVGDVVVSIDDSPISSATSLVVALRSREVGDSVTISYIRDGAQRVTTTI 350          
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Match: UPI0016424B7E (trypsin-like peptidase domain-containing protein n=2 Tax=Nocardioides TaxID=1839 RepID=UPI0016424B7E)

HSP 1 Score: 50.4 bits (119), Expect = 3.900e-5
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   37 QTRLGRPGLVGAAVTEVVENSPASEAGLEVGAVIVTLDDQRITGSRLLIDTVRAASPNAKHTIAY 231
            Q + GR    GA + EV++++PA+EAGLE G V+V +D +R+T    LI ++R   P    TIA+
Sbjct:  364 QVQTGRRDGTGARIEEVLDDTPAAEAGLEAGDVVVAVDGERVTDGIALIVSIRTHQPG--ETIAF 426          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82808.19351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A1I3ZMM6_9HYPH6.070e-639.74Periplasmic serine endoprotease DegP-like n=1 Tax=... [more]
A0A2V2CG99_9FIRM8.220e-641.03Peptidase S1 n=1 Tax=Clostridia bacterium TaxID=20... [more]
A0A7V0U1E0_9PROT1.130e-537.36Periplasmic serine endoprotease DegP-like n=1 Tax=... [more]
A0A3M1SV22_9BACT1.800e-535.71PDZ domain-containing protein n=2 Tax=Acidobacteri... [more]
A0A3M2EXR1_9BACT2.130e-539.74Do family serine endopeptidase n=1 Tax=Candidatus ... [more]
A0A6N2DER5_9ACTN2.790e-539.47PDZ domain-containing protein n=1 Tax=Ilumatobacte... [more]
A0A7V0ZIA4_9BACT2.870e-541.51DegQ family serine endoprotease n=1 Tax=Candidatus... [more]
A0A7T1F363_9BACT2.870e-536.23Serine protease HtrA n=2 Tax=Atribacterota TaxID=6... [more]
A0A6J7IW74_9ZZZZ3.790e-533.71Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A... [more]
UPI0016424B7E3.900e-541.54trypsin-like peptidase domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82808contigM-pyrifera_M_contig82808:590..865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.114071-CDS-M-pyrifera_M_contig82808:589..8651622816735.114071-CDS-M-pyrifera_M_contig82808:589..865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82808 590..865 -
1692278147.4825804-CDS-M-pyrifera_M_contig82808:589..8651692278147.4825804-CDS-M-pyrifera_M_contig82808:589..865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82808 590..865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82808.19351.1prot_M-pyrifera_M_contig82808.19351.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82808 590..865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82808.19351.1

>prot_M-pyrifera_M_contig82808.19351.1 ID=prot_M-pyrifera_M_contig82808.19351.1|Name=mRNA_M-pyrifera_M_contig82808.19351.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
LGVRAVDASTEDQTRLGRPGLVGAAVTEVVENSPASEAGLEVGAVIVTLD
DQRITGSRLLIDTVRAASPNAKHTIAYYDPSGSLVQTDVALR
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mRNA from alignment at M-pyrifera_M_contig82808:590..865-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82808.19351.1 ID=mRNA_M-pyrifera_M_contig82808.19351.1|Name=mRNA_M-pyrifera_M_contig82808.19351.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig82808:590..865- (Macrocystis pyrifera P11B4 male)
CTGGGGGTTCGGGCCGTTGATGCATCGACCGAAGATCAGACGCGATTGGG TCGCCCCGGCTTAGTAGGCGCCGCAGTGACCGAAGTCGTAGAAAACTCGC CCGCATCCGAAGCCGGGTTGGAAGTGGGTGCCGTGATCGTCACCTTGGAC GACCAGCGGATTACCGGTTCAAGACTGTTGATTGATACTGTACGCGCAGC TTCGCCCAATGCAAAACACACCATCGCCTACTACGATCCCTCTGGTTCAC TCGTGCAAACCGACGTGGCACTGAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82808:590..865-

>mRNA_M-pyrifera_M_contig82808.19351.1 ID=mRNA_M-pyrifera_M_contig82808.19351.1|Name=mRNA_M-pyrifera_M_contig82808.19351.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig82808:590..865- (Macrocystis pyrifera P11B4 male)
CTGGGGGTTCGGGCCGTTGATGCATCGACCGAAGATCAGACGCGATTGGG
TCGCCCCGGCTTAGTAGGCGCCGCAGTGACCGAAGTCGTAGAAAACTCGC
CCGCATCCGAAGCCGGGTTGGAAGTGGGTGCCGTGATCGTCACCTTGGAC
GACCAGCGGATTACCGGTTCAAGACTGTTGATTGATACTGTACGCGCAGC
TTCGCCCAATGCAAAACACACCATCGCCTACTACGATCCCTCTGGTTCAC
TCGTGCAAACCGACGTGGCACTGAGACTGGGGGTTCGGGCCGTTGATGCA
TCGACCGAAGATCAGACGCGATTGGGTCGCCCCGGCTTAGTAGGCGCCGC
AGTGACCGAAGTCGTAGAAAACTCGCCCGCATCCGAAGCCGGGTTGGAAG
TGGGTGCCGTGATCGTCACCTTGGACGACCAGCGGATTACCGGTTCAAGA
CTGTTGATTGATACTGTACGCGCAGCTTCGCCCAATGCAAAACACACCAT
CGCCTACTACGATCCCTCTGGTTCACTCGTGCAAACCGACGTGGCACTGA
GA
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