mRNA_M-pyrifera_M_contig82580.19303.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82580.19303.1
Unique NamemRNA_M-pyrifera_M_contig82580.19303.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: A0A5A8E7G1_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E7G1_CAFRO)

HSP 1 Score: 57.4 bits (137), Expect = 2.720e-8
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   43 GRTILLAAVLANDVPLVKRLLEADPETIKDRSKLGETALHLAILHGSREMIQVLLERGADINA 231
            G T +  AV + D   V+ LL A P+ + DR++LGET LH+A+    RE++Q+L   GAD NA
Sbjct:   20 GHTDMHVAVSSGDPARVRELLLARPDAVHDRTRLGETPLHIAVARAPREVVQMLCASGADPNA 82          
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: A0A2V9FRB3_9BACT (Uncharacterized protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9FRB3_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 5.190e-8
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   43 GRTILLAAVLANDVPLVKRLLEADPETIKDRSKLGETALHLAILHGSREMIQVLLERGADINA 231
            G   L  AV   D+  VK +L+ D E +  R + G T LH A L G RE++Q+LL+RGADIN+
Sbjct:    3 GLDKLTKAVKRRDIDQVKTILDEDGELVHVRDEAGATGLHYATLDGLREIVQLLLDRGADINS 65          
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: UPI001865172E (KN motif and ankyrin repeat domain-containing protein 3-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001865172E)

HSP 1 Score: 58.2 bits (139), Expect = 7.110e-8
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 MVDVEALHPDHQ-RAGRTILLAAVLAN-----DVPLVKRLLEADPETIKDRSKLGETALHLAILHGSREMIQVLLERGADIN 228
            ++D    H D + RAG T ++ A LA+     D+ +V+RL  A     K  S+ G+TAL LA+ HG +EM+QVLL+ GAD+N
Sbjct:  710 LLDTGVCHVDRRNRAGYTAIMLAALASVREEDDMQVVRRLFSAGDVNAK-ASQAGQTALMLAVSHGRQEMVQVLLDCGADVN 790          
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: A0A5A8C696_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C696_CAFRO)

HSP 1 Score: 57.4 bits (137), Expect = 1.150e-7
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   43 GRTILLAAVLANDVPLVKRLLEADPETIKDRSKLGETALHLAILHGSREMIQVLLERGADINA 231
            G T +  AV + D   V+ LL A P+ + DR++LGET LH+A+    RE++Q+L   GAD NA
Sbjct:   20 GHTDMHVAVSSGDPARVRELLLARPDAVHDRTRLGETPLHIAVARAPREVVQMLCASGADPNA 82          
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: A0A2V8TV10_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8TV10_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   55 LLAAVLANDVPLVKRLLEADPETIKDRSKLGETALHLAILHGSREMIQVLLERGADINA 231
            L+AAV   D+  VK +LE D      R + G T LH A LHG R+++++LL++GADIN+
Sbjct:    7 LIAAVKEGDLERVKGILETDDRLANLRDESGATPLHYAALHGHRQIVELLLKQGADINS 65          
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: A0A2E8Y6E0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E8Y6E0_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.680e-7
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   43 GRTILLAAVLANDVPLVKRLLE--ADPETIKDRSKLG------ETALHLAILHGSREMIQVLLERGADINAPQTGQ 246
            G+T L+ AV AND  LVK LLE  A+P    D+  +G      +TALHLA L+G+RE+ ++L+E GADIN     Q
Sbjct:  153 GQTELMIAVEANDADLVKHLLERNANPNAT-DKVAMGIFGELEQTALHLAALNGNRELCELLVEGGADINQKDKAQ 227          
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: A0A015LYR5_RHIIW (Nas6p n=3 Tax=Rhizophagus TaxID=1129544 RepID=A0A015LYR5_RHIIW)

HSP 1 Score: 55.1 bits (131), Expect = 4.500e-7
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   43 GRTILLAAVLANDVPLVKRLLEADPETIKDRSKLGETALHLAILHGSREMIQVLLERGADINAPQTGQDYYTPLH 267
            G  +L   V+  +V +VK+L++     I  + KLG  A+H A + G++EMI++L E+GA+IN  Q   D +T LH
Sbjct:   99 GTNLLQNFVICGNVQIVKKLIDEYDVKIDYKDKLGREAIHHAAIIGNKEMIELLFEKGANINV-QDNWDKFTSLH 172          
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: A0A2M6GN12_9BACT (Uncharacterized protein n=1 Tax=Cytophagales bacterium CG18_big_fil_WC_8_21_14_2_50_42_9 TaxID=1973956 RepID=A0A2M6GN12_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 4.670e-7
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   55 LLAAVLANDVPLVKRLLEADPETIKD-RSKLGETALHLAILHGSREMIQVLLERGADINAPQTGQDYYTPL 264
            +LAAV A +   VK  LEA P+ +++ +    E+ L LA   G++EM+++LL +GAD+N P  G   YTPL
Sbjct:    7 ILAAVQAGNTAQVKSALEAQPDLLQNSQGANNESLLGLAAKQGNKEMVELLLAKGADVNKPAAGG--YTPL 75          
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: UPI001402D361 (transient receptor potential cation channel subfamily V member 5-like isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001402D361)

HSP 1 Score: 55.5 bits (132), Expect = 6.260e-7
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   10 VEALHP-DHQRAGRTILLAAVLANDVPLVKRLLEADPETIKDRSKLGETALHLAILHGSREMIQVLLERGAD-INAPQTGQDY 252
            V  LH    +R   T L +A  ANDV ++K+LLE+      ++  +GETALH+A L+ + E  +VLLE   D +N P T + Y
Sbjct:   34 VSKLHVLQEKRITETPLFSAARANDVNVIKKLLESPSVDPFEKGVMGETALHIAALYDNYEFAKVLLEEAPDLVNVPATSELY 116          
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Match: UPI0004198A13 (ankyrin repeat domain-containing protein n=1 Tax=Adhaeribacter aquaticus TaxID=299567 RepID=UPI0004198A13)

HSP 1 Score: 52.0 bits (123), Expect = 9.000e-7
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   58 LAAVLANDVPLVKRLLEADPETIKDRSKLGETALHLAILHGSREMIQVLLERGADINA 231
            + AV + ++  VK LL+ +P+ +  +   G T LHLA   G+ ++I++LLERGADINA
Sbjct:    8 IEAVKSGNLEEVKSLLDNEPDIVNTKDNKGYTLLHLAAQEGNGDLIKLLLERGADINA 65          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82580.19303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E7G1_CAFRO2.720e-844.44Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A2V9FRB3_9BACT5.190e-846.03Uncharacterized protein n=3 Tax=Acidobacteria bact... [more]
UPI001865172E7.110e-842.68KN motif and ankyrin repeat domain-containing prot... [more]
A0A5A8C696_CAFRO1.150e-744.44Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A2V8TV10_9BACT1.390e-745.76Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2E8Y6E0_9BACT1.680e-747.37Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A015LYR5_RHIIW4.500e-738.67Nas6p n=3 Tax=Rhizophagus TaxID=1129544 RepID=A0A0... [more]
A0A2M6GN12_9BACT4.670e-742.25Uncharacterized protein n=1 Tax=Cytophagales bacte... [more]
UPI001402D3616.260e-739.76transient receptor potential cation channel subfam... [more]
UPI0004198A139.000e-743.10ankyrin repeat domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82580contigM-pyrifera_M_contig82580:640..906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.5821085-CDS-M-pyrifera_M_contig82580:639..9061622816732.5821085-CDS-M-pyrifera_M_contig82580:639..906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82580 640..906 +
1692278146.0355177-CDS-M-pyrifera_M_contig82580:639..9061692278146.0355177-CDS-M-pyrifera_M_contig82580:639..906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82580 640..906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82580.19303.1prot_M-pyrifera_M_contig82580.19303.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82580 640..906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82580.19303.1

>prot_M-pyrifera_M_contig82580.19303.1 ID=prot_M-pyrifera_M_contig82580.19303.1|Name=mRNA_M-pyrifera_M_contig82580.19303.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MVDVEALHPDHQRAGRTILLAAVLANDVPLVKRLLEADPETIKDRSKLGE
TALHLAILHGSREMIQVLLERGADINAPQTGQDYYTPLH
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mRNA from alignment at M-pyrifera_M_contig82580:640..906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82580.19303.1 ID=mRNA_M-pyrifera_M_contig82580.19303.1|Name=mRNA_M-pyrifera_M_contig82580.19303.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig82580:640..906+ (Macrocystis pyrifera P11B4 male)
ATGGTTGATGTGGAGGCATTGCATCCAGACCATCAAAGGGCTGGAAGGAC AATTTTGTTGGCTGCAGTCTTAGCAAACGATGTTCCGTTGGTGAAGAGGC TGTTGGAGGCGGATCCGGAAACTATTAAAGATCGTTCCAAGCTTGGTGAA ACTGCATTACATCTAGCAATTTTACATGGATCTAGAGAAATGATCCAAGT GCTCTTGGAACGTGGCGCTGACATCAATGCACCCCAAACTGGCCAAGATT ACTATACTCCACTCCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82580:640..906+

>mRNA_M-pyrifera_M_contig82580.19303.1 ID=mRNA_M-pyrifera_M_contig82580.19303.1|Name=mRNA_M-pyrifera_M_contig82580.19303.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig82580:640..906+ (Macrocystis pyrifera P11B4 male)
ATGGTTGATGTGGAGGCATTGCATCCAGACCATCAAAGGGCTGGAAGGAC
AATTTTGTTGGCTGCAGTCTTAGCAAACGATGTTCCGTTGGTGAAGAGGC
TGTTGGAGGCGGATCCGGAAACTATTAAAGATCGTTCCAAGCTTGGTGAA
ACTGCATTACATCTAGCAATTTTACATGGATCTAGAGAAATGATCCAAGT
GCTCTTGGAACGTGGCGCTGACATCAATGCACCCCAAACTGGCCAAGATT
ACTATACTCCACTCCATATGGTTGATGTGGAGGCATTGCATCCAGACCAT
CAAAGGGCTGGAAGGACAATTTTGTTGGCTGCAGTCTTAGCAAACGATGT
TCCGTTGGTGAAGAGGCTGTTGGAGGCGGATCCGGAAACTATTAAAGATC
GTTCCAAGCTTGGTGAAACTGCATTACATCTAGCAATTTTACATGGATCT
AGAGAAATGATCCAAGTGCTCTTGGAACGTGGCGCTGACATCAATGCACC
CCAAACTGGCCAAGATTACTATACTCCACTCCAT
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