mRNA_M-pyrifera_M_contig81758.19139.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81758.19139.1
Unique NamemRNA_M-pyrifera_M_contig81758.19139.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81758.19139.1 vs. uniprot
Match: UPI00199DA422 (Fibronectin type III domain-containing protein n=1 Tax=Roseiflexaceae bacterium TaxID=2762507 RepID=UPI00199DA422)

HSP 1 Score: 124 bits (310), Expect = 3.990e-29
Identity = 72/195 (36.92%), Postives = 102/195 (52.31%), Query Frame = 1
Query:    4 WAERRHLQRVFEIGQAFEREFGAGSIGTRVFPVYASWSIMPDRFNETLQWFEAWKGAGSAPKYLTHVASTSYFGYNDTKNLPPKATVSQIVAGFLNSSTHVPQDLQQIDAVAKAFGLKHASYEGSMGYRVGDETDVGNVIEAVRAPEATEII-----KNWFTNYGKFYDVLHQFSFSGMYSQYGQWGATDLLEDL 573
            WA RRH +R  +IG AF+ EFGAG++G+++ PV + W+I P ++ + L W  A  GA S   Y+  +A  SYF  +   +     +V QI+A    SS     D Q     A  +G+KH  YEG      GD T + N I A R P   ++I     +NWF   G   D+   F+ S  YS+YG WG TD + +L
Sbjct:  362 WARRRHAKRTRDIGLAFQSEFGAGTLGSKLRPVLSHWTIQPQQYQQMLSWLNATYGAPSG--YIYAIAGASYFNCDPACST---GSVDQIIAALQASSDGARADRQAHTTTANTWGIKHFMYEGGPDSGGGDATTIANKIRAHRDPRMKDLIIRDIEQNWFGVGG---DLFMYFTLSSAYSRYGMWGITDDITNL 548          
BLAST of mRNA_M-pyrifera_M_contig81758.19139.1 vs. uniprot
Match: A0A3D9Q9N5_9BACL (S-layer family protein n=1 Tax=Paenibacillus taihuensis TaxID=1156355 RepID=A0A3D9Q9N5_9BACL)

HSP 1 Score: 98.6 bits (244), Expect = 2.570e-20
Identity = 62/206 (30.10%), Postives = 102/206 (49.51%), Query Frame = 1
Query:    4 WAERRHLQRVFEIGQAFEREFGAGSIGTRVFPVYASWSIMPDRFNETLQWFEAWKGAGSAPKYLTHVASTSYFGYNDTKNLPPKATVSQIVAGFLNSSTHVPQDLQQIDAVAKAFGLKHASYEGSMGYRVGDETDVGNVIEAVRAPEATEIIK-----NWFTNYGKFYDVLHQFSFSGMYSQYGQWGAT-DLLEDLTTPKWKGFTT 603
            W   R  QR+ EIG+ F+ EFG  ++ TRV PV + ++I+PD++ + L W    K  G   +Y   +AS  YF  N          V   +     +++    +  ++ ++A  +GLK  +YEG      G   +V N I A R+    +++K     N+    G   D+   F+ S  Y++YG WGAT D+ + L TPK++  T+
Sbjct:  591 WTRHRIAQRLIEIGRQFQSEFGEDALNTRVRPVLSWFAIIPDQYEDMLNWVS--KVYGDPKQYFYAIASAPYFNSNAAGEAASATEVLTAMQADSANASKPDGNKVKLISLADQYGLKSFTYEGGPDSGGGSTVNVDNRIAAHRSERMGDLVKYDVGNNFLAQDG---DMFMYFTLSSGYNRYGMWGATEDIFDGLNTPKYEALTS 791          
BLAST of mRNA_M-pyrifera_M_contig81758.19139.1 vs. uniprot
Match: A0A1I6VM36_9BACL (Carbohydrate binding domain-containing protein n=3 Tax=Paenibacillus TaxID=44249 RepID=A0A1I6VM36_9BACL)

HSP 1 Score: 95.1 bits (235), Expect = 4.070e-19
Identity = 61/209 (29.19%), Postives = 105/209 (50.24%), Query Frame = 1
Query:    4 WAERRHLQRVFEIGQAFEREFGAGSIGTRVFPVYASWSIMPDRFNETLQWFEAWKGAGSAPKYLTHVASTSYFGYNDTKNLPPKATVSQIVAGFLNSSTHVP---QDLQQIDAVAKAFGLKHASYEGSMGYRVGDETDVGNVIEAVRAPEATEIIK-----NWFTNYGKFYDVLHQFSFSGMYSQYGQWGAT-DLLEDLTTPKWKGFTT 603
            W   R  QR+ EIGQ F+  FG  ++ TRV PV + ++I+PD++ + L W    +  G    Y   +AS  YF  +   +    A+ ++++      S       +  Q++  +A  +GLK  +YEG      G   +V N I A R+    +++K     N+    G   D+   F+ +  Y++YG WGA+ D+L++L TPK++  T+
Sbjct:  589 WTRHRIAQRLIEIGQQFQTVFGEDALNTRVRPVLSWFAIIPDQYEDMLNWVS--QTYGDPKNYFYAIASAPYFNSSAASDA---ASTTEVLTAMQEDSKRFSSPDETKQELIGLADQYGLKSYTYEGGPDSGGGSTINVENRIAAHRSERMGDLVKYDVGNNFLDQNG---DMFMYFTLTSGYNRYGMWGASEDILDNLDTPKYEALTS 789          
BLAST of mRNA_M-pyrifera_M_contig81758.19139.1 vs. uniprot
Match: A0A7X4YPS5_9BACL (Uncharacterized protein n=1 Tax=Paenibacillus sacheonensis TaxID=742054 RepID=A0A7X4YPS5_9BACL)

HSP 1 Score: 95.1 bits (235), Expect = 4.080e-19
Identity = 62/209 (29.67%), Postives = 103/209 (49.28%), Query Frame = 1
Query:    4 WAERRHLQRVFEIGQAFEREFGAGSIGTRVFPVYASWSIMPDRFNETLQWFEAWKGAGSAPKYLTHVASTSYFGYNDTKNLPPKATVSQIVAGFLNSSTHVPQ---DLQQIDAVAKAFGLKHASYEGSMGYRVGDETDVGNVIEAVRAPEATEIIK-----NWFTNYGKFYDVLHQFSFSGMYSQYGQWGAT-DLLEDLTTPKWKGFTT 603
            W   R  QR+ EIG+ F+ E G  ++ TRV PV + ++IMPD++ + L W    K  G    Y   +AS  YF   ++      A+ ++++      S +  +     +Q+ ++A  +GLK  +YEG      G   +V N I A R+     ++K     N+    G   D+   F+ +  Y++YG WGAT D+   L TPK++  T+
Sbjct:  591 WTRHRIAQRLIEIGRQFQSELGEDALNTRVRPVLSWFAIMPDQYEDMLNWVS--KTYGDPKNYFYAIASAPYF---NSSAAGEAASATEVLTAMQADSANFSKPDGSKKQLISLADQYGLKSFTYEGGPDSGGGSTVNVDNRIAAHRSERMGNLVKYDVGNNFLAQDG---DMFMYFTLTSGYNRYGMWGATEDIFNGLNTPKYEALTS 791          
BLAST of mRNA_M-pyrifera_M_contig81758.19139.1 vs. uniprot
Match: A0A328TX49_9BACL (Uncharacterized protein n=2 Tax=Paenibacillus montanisoli TaxID=2081970 RepID=A0A328TX49_9BACL)

HSP 1 Score: 87.8 bits (216), Expect = 1.380e-16
Identity = 58/209 (27.75%), Postives = 101/209 (48.33%), Query Frame = 1
Query:    4 WAERRHLQRVFEIGQAFEREFGAGSIGTRVFPVYASWSIMPDRFNETLQWFEAWKGAGSAPKYLTHVASTSYFGYNDTKNLPPKATVSQIVAGFLNSSTHVPQ---DLQQIDAVAKAFGLKHASYEGSMGYRVGDETDVGNVIEAVRAPEATEII-----KNWFTNYGKFYDVLHQFSFSGMYSQYGQWGAT-DLLEDLTTPKWKGFTT 603
            W   R  +R+ EIG+ F+  FG  ++ TRV PV + ++I+PD++ + L W    K  G   +Y   + S  YF  +   +    A+V++++      S            +  +A  +GLK  +YEG      G   +V N I A R+ +  +++      N+    G   D+   F+ +  Y++YG WGAT D+  +L TPK++  T+
Sbjct:  597 WTRHRVAKRLIEIGRQFQTVFGEDALNTRVRPVLSWFAIIPDQYEDMLNWVS--KVYGDPKQYFYAIGSAPYFNSSAASDA---ASVTEVLTAMQEDSKRFSSPDGSKMSLIRLADQYGLKSFTYEGGPDSGGGSTINVENRIAAHRSEQMGDLVTYDVGNNFLDKNG---DMFMYFTLTSGYNRYGMWGATEDIFANLETPKYEALTS 797          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81758.19139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI00199DA4223.990e-2936.92Fibronectin type III domain-containing protein n=1... [more]
A0A3D9Q9N5_9BACL2.570e-2030.10S-layer family protein n=1 Tax=Paenibacillus taihu... [more]
A0A1I6VM36_9BACL4.070e-1929.19Carbohydrate binding domain-containing protein n=3... [more]
A0A7X4YPS5_9BACL4.080e-1929.67Uncharacterized protein n=1 Tax=Paenibacillus sach... [more]
A0A328TX49_9BACL1.380e-1627.75Uncharacterized protein n=2 Tax=Paenibacillus mont... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81758contigM-pyrifera_M_contig81758:3..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue1.4e-25
Seed eggNOG ortholog400682.PAC_15713902
Hectar predicted targeting categoryother localisation
EggNOG OGs2E8FZ@1,2SEY6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size615
Cds size615
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81758.19139.1prot_M-pyrifera_M_contig81758.19139.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81758 3..790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.164979-CDS-M-pyrifera_M_contig81758:2..4181622816725.164979-CDS-M-pyrifera_M_contig81758:2..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81758 3..418 +
1692278142.2897532-CDS-M-pyrifera_M_contig81758:2..4181692278142.2897532-CDS-M-pyrifera_M_contig81758:2..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81758 3..418 +
1622816725.179947-CDS-M-pyrifera_M_contig81758:503..6301622816725.179947-CDS-M-pyrifera_M_contig81758:503..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81758 504..630 +
1692278142.3034427-CDS-M-pyrifera_M_contig81758:503..6301692278142.3034427-CDS-M-pyrifera_M_contig81758:503..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81758 504..630 +
1622816725.1904306-CDS-M-pyrifera_M_contig81758:718..7901622816725.1904306-CDS-M-pyrifera_M_contig81758:718..790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81758 719..790 +
1692278142.3137572-CDS-M-pyrifera_M_contig81758:718..7901692278142.3137572-CDS-M-pyrifera_M_contig81758:718..790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81758 719..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81758.19139.1

>prot_M-pyrifera_M_contig81758.19139.1 ID=prot_M-pyrifera_M_contig81758.19139.1|Name=mRNA_M-pyrifera_M_contig81758.19139.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
VWAERRHLQRVFEIGQAFEREFGAGSIGTRVFPVYASWSIMPDRFNETLQ
WFEAWKGAGSAPKYLTHVASTSYFGYNDTKNLPPKATVSQIVAGFLNSST
HVPQDLQQIDAVAKAFGLKHASYEGSMGYRVGDETDVGNVIEAVRAPEAT
EIIKNWFTNYGKFYDVLHQFSFSGMYSQYGQWGATDLLEDLTTPKWKGFT
TCAL*
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mRNA from alignment at M-pyrifera_M_contig81758:3..790+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81758.19139.1 ID=mRNA_M-pyrifera_M_contig81758.19139.1|Name=mRNA_M-pyrifera_M_contig81758.19139.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=788bp|location=Sequence derived from alignment at M-pyrifera_M_contig81758:3..790+ (Macrocystis pyrifera P11B4 male)
GTTTGGGCGGAGCGGCGTCACCTGCAGCGAGTGTTTGAGATTGGACAAGC GTTTGAGCGGGAGTTTGGAGCTGGCTCTATTGGAACGAGGGTGTTTCCAG TGTACGCAAGCTGGTCCATCATGCCAGACCGCTTCAACGAAACGCTGCAG TGGTTCGAAGCTTGGAAGGGCGCTGGCAGTGCTCCAAAGTACCTCACCCA TGTCGCGTCCACTTCCTACTTTGGCTACAACGACACCAAGAACCTCCCTC CCAAAGCCACCGTCTCTCAAATCGTGGCAGGCTTCCTCAACTCCTCCACC CATGTACCCCAAGACCTCCAGCAAATCGACGCAGTGGCAAAGGCCTTTGG ACTCAAACACGCCTCCTACGAAGGGAGCATGGGGTATCGAGTTGGAGACG AAACAGATGTTGGCAAGTATGTGTGGATTGGGGGTAGGAAAGTGGGGAGG GAGGAAGGGAGGGAGGAGAATTTGTTTGTTTCTTTCTTGTGATTGTTGCA GTGTGATCGAGGCTGTGCGTGCCCCTGAAGCGACTGAGATTATCAAGAAC TGGTTCACGAATTACGGAAAGTTTTATGACGTGCTTCATCAATTCAGCTT CTCTGGCATGTACAGCCAATATGGCCAAGTAAGTTCTCTCTCTCCCAAAG TTCCTTTCCACACCAAAAACAACCCCTCATTCTCCACCTCTCACACTCTT GCTTCTTCTATTGCAGTGGGGAGCGACGGATCTATTGGAAGACTTGACCA CCCCAAAATGGAAAGGGTTTACAACTTGCGCGTTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81758:3..790+

>mRNA_M-pyrifera_M_contig81758.19139.1 ID=mRNA_M-pyrifera_M_contig81758.19139.1|Name=mRNA_M-pyrifera_M_contig81758.19139.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig81758:3..790+ (Macrocystis pyrifera P11B4 male)
GTTTGGGCGGAGCGGCGTCACCTGCAGCGAGTGTTTGAGATTGGACAAGC
GTTTGAGCGGGAGTTTGGAGCTGGCTCTATTGGAACGAGGGTGTTTCCAG
TGTACGCAAGCTGGTCCATCATGCCAGACCGCTTCAACGAAACGCTGCAG
TGGTTCGAAGCTTGGAAGGGCGCTGGCAGTGCTCCAAAGTACCTCACCCA
TGTCGCGTCCACTTCCTACTTTGGCTACAACGACACCAAGAACCTCCCTC
CCAAAGCCACCGTCTCTCAAATCGTGGCAGGCTTCCTCAACTCCTCCACC
CATGTACCCCAAGACCTCCAGCAAATCGACGCAGTGGCAAAGGCCTTTGG
ACTCAAACACGCCTCCTACGAAGGGAGCATGGGGTATCGAGTTGGAGACG
AAACAGATGTTGGCAAGTTTGGGCGGAGCGGCGTCACCTGCAGCGAGTGT
TTGAGATTGGACAAGCGTTTGAGCGGGAGTTTGGAGCTGGCTCTATTGGA
ACGAGGGTGTTTCCAGTGTACGCAAGCTGGTCCATCATGCCAGACCGCTT
CAACGAAACGCTGCAGTGGTTCGAAGCTTGGAAGGGCGCTGGCAGTGCTC
CAAAGTACCTCACCCATGTCGCGTCCACTTCCTACTTTGGCTACAACGAC
ACCAAGAACCTCCCTCCCAAAGCCACCGTCTCTCAAATCGTGGCAGGCTT
CCTCAACTCCTCCACCCATGTACCCCAAGACCTCCAGCAAATCGACGCAG
TGGCAAAGGCCTTTGGACTCAAACACGCCTCCTACGAAGGGAGCATGGGG
TATCGAGTTGGAGACGAAACAGATGTTGGCAATGTGATCGAGGCTGTGCG
TGCCCCTGAAGCGACTGAGATTATCAAGAACTGGTTCACGAATTACGGAA
AGTTTTATGACGTGCTTCATCAATTCAGCTTCTCTGGCATGTACAGCCAA
TATGGCCAATGTGATCGAGGCTGTGCGTGCCCCTGAAGCGACTGAGATTA
TCAAGAACTGGTTCACGAATTACGGAAAGTTTTATGACGTGCTTCATCAA
TTCAGCTTCTCTGGCATGTACAGCCAATATGGCCAATGGGGAGCGACGGA
TCTATTGGAAGACTTGACCACCCCAAAATGGAAAGGGTTTACAACTTGCG
CGTTGTGATGGGGAGCGACGGATCTATTGGAAGACTTGACCACCCCAAAA
TGGAAAGGGTTTACAACTTGCGCGTTGTGA
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