mRNA_M-pyrifera_M_contig81554.19085.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81554.19085.1
Unique NamemRNA_M-pyrifera_M_contig81554.19085.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: A0A812WSX9_9DINO (THO1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WSX9_9DINO)

HSP 1 Score: 100 bits (249), Expect = 1.940e-20
Identity = 80/249 (32.13%), Postives = 119/249 (47.79%), Query Frame = 1
Query:   61 GKVDASLPLVVLERALECCSLRESGELWSLLEERREVFARPSILPRTR-NPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLSTPTL-----PSARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDPIQVAKSKEAWGSFETSVKRVVEGMERELQARGGGKALGGGXXKAEGEAG-----VEEAGKVEGRYLTSRGLFRLQLGDVQVQRQVLVELLLVLGYL 774
            G++   LPL+VLE AL C    +   LW++++ RR      ++L  ++ N   KL LL+ SN L  RL  + + V L GR+ +FLA+ LPL+++SGVN  GT S   +     P A  +EE    +             Y  FW L +    P +   S +AW  F    + V    E+    +   +         E EAG     ++ A     +YLTS  LF LQ  D  VQRQ+ ++LL+VL +L
Sbjct:   45 GQLPVELPLLVLEEALYCSPAAQCALLWNVVDVRRSALTHTAVLEHSKANSRGKLALLRFSNSLLSRLSPAAQPV-LCGRIQVFLANALPLSERSGVNPKGTFSAENVTAFDTPPAGLEEEPTWQQ-------------YTAFWGLHEFLAVPPRATASMDAWREFMACCEAVATVFEQFPHGKSSAE---------EDEAGSAAPALDTATFFCPKYLTSFALFDLQKRDPVVQRQICIQLLIVLRFL 270          
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: A0A5A8DA97_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DA97_CAFRO)

HSP 1 Score: 99.4 bits (246), Expect = 5.710e-20
Identity = 84/268 (31.34%), Postives = 121/268 (45.15%), Query Frame = 1
Query:   19 VGVLFDAGISLALGGKVDASLPLVVLERALECCSLRESGELWSLLEERREVFARPSILPRTR--NPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLS-TPTLPSARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDPIQVAKSKEAW----GSFE---TSVKRVVEGMERELQARGGGKA-LGGGXXKAEGEAGVEEAGKVEG------RYLTSRGLFRLQLGDVQVQRQVLVELLLVLGY 771
            +  L D   + A  G    +LP+ VLE A     +     LW + E R      P  +P     NP SK+ LL+LSNGL  RL  S  D +L GRVLLFL HVL L+DKSG+N  G  + +P    AR    G   ++      D     +  FW+LQ +   P +  +S ++W     +F+   ++V+  V    R  +++    A   G      G  GV      EG       +LT+  L  LQL D    R VL++ ++ L Y
Sbjct:   78 IAALVDGSAAAANAGTCSPALPMQVLEIAFASTPVSHCAALWDVAESRASTLGSPPFVPLDAGSNPASKVALLRLSNGLLARLS-SVHDAELCGRVLLFLGHVLRLSDKSGLNAAGHFAESPASRPARPSASGDTEDDEEAATWD----RFERFWSLQDLCARPWEAVESSDSWLRAVAAFDGVLSTVRESVSQCSRTARSQVAASAGASGSTAPPAGADGVSIEALPEGGADAIVNHLTAPSLLHLQLRDPAFLRHVLLQAVIALRY 340          
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: R1BCY2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BCY2_EMIHU)

HSP 1 Score: 95.1 bits (235), Expect = 1.060e-18
Identity = 69/204 (33.82%), Postives = 107/204 (52.45%), Query Frame = 1
Query:    1 AGLAGKVGV-LFDAGISLALGGKVDASLPLVVLERALECCSLRESGELWSLLEERREVFARPSILPRTRNPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLSTPTLP-----SARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDPIQVAKSKEAWGSFETSVKRVVEGMERELQAR 594
            AG AG + V L D  I LA     D + P  ++E   +   + ES  L+  +E+R    A+   L R+ N  +KL  ++  N L RRL  S ++    GRVLL +A++LPL+++SGVNL G ++   L      +A  ++EG AAE+G+         LYA FW LQ    DP    K  E+W +  + ++ V++    +L+AR
Sbjct:   89 AGAAGALVVALIDRSIELATARAADLNTPFALMEDLFDSQVISESEALFPQIEQRGAALAK---LMRSTNNRAKLTFIRTCNELLRRLSKS-KNTNFCGRVLLLMAYMLPLSERSGVNLKGAMAPSDLELQPDEAADDKQEGSAAEDGS---------LYASFWGLQAAFADPAAAVKP-ESWATLVSRLETVLQEAAEKLRAR 278          
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: A0A2P6V5B9_9CHLO (THO complex subunit 1 isoform X1 isoform A n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V5B9_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 1.140e-18
Identity = 79/235 (33.62%), Postives = 108/235 (45.96%), Query Frame = 1
Query:   67 VDASLPLVVLERALECCSLRESGELWSLLEERREVFARPSILPRTRNPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLSTPTLPSARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDPIQVAKSKEAWGSFETSVKRVVEGMERELQARGGGKALGGGXXKAEGEAGVEEAGKVEGRYLTSRGLFRLQLGDVQVQRQVLVELLLVLGY 771
            V+  L   +LE   E  S  +   L++ L+ R EVF  P +        SKL LL+  N L +RL  S   + L GRVLLFLA +LPLT++SGVNL G  +T  +       EG    EG         A Y  FW LQ    +P   A     WG     ++RV+E  + E    G G A G     A G  G         +YL+S  L  LQL D   +R  L++ L+++ +
Sbjct:  128 VEPGLAAQLLEEISEGASNADCEGLYAYLDSRTEVFKAPPL-----QGASKLTLLRTCNALLKRLSKSANAL-LCGRVLLFLAKLLPLTERSGVNLGGAFNTDNVTPVEEVAEGAVDSEGQPVD----VAFYRTFWGLQSYFSNP-PAALQPGKWGEVSRDIRRVLEKFQAEKVTVGEGAAAG---AAANGGQGASV------KYLSSSRLMSLQLRDATFRRHFLLQCLILMQW 342          
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: A0A830BZ07_9LAMI (THO complex subunit 1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BZ07_9LAMI)

HSP 1 Score: 93.6 bits (231), Expect = 4.990e-18
Identity = 73/254 (28.74%), Postives = 123/254 (48.43%), Query Frame = 1
Query:   13 GKVGVLFDAGISLALGGKVDASLPLVVLERALECCSLRESGELWSLLEERREVFARPSILPRTRNPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLSTPTLPSARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDPIQVAKSKEAWGSFETSVKRVVEGMERELQARGGGKALGGGXXKAEGEAGVEEAGKVEGRYLTSRGLFRLQLGDVQVQRQVLVELLLVLGYL 774
            G++  L D  + L     ++  +   +LE   E  ++R   +++  +E ++++  +P +  R      KLV+L+  N L RRL  +  DV   GR+++FLAH  PL+++S VN+ G  +T    S   + E +AAE    +        Y  FW+LQ+   +P  +A +   W  F +S+  V+   E +  +   G AL       E     +EA     +YLTS  L  L+L D   +R VLV+ L++  YL
Sbjct:   89 GQIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMRNCKDIFGYIESKQDILGKPELFAR-----GKLVMLRTCNQLLRRLSKAN-DVVFCGRIIMFLAHFFPLSERSAVNIKGVFNT----SNETKYEKEAAESSTIDFN-----FYKTFWSLQEFFSNPASLAPAPTKWQKFISSLAVVLSTFEAQPLSDEEGTAL-----NLE-----DEASNFSIKYLTSSNLMGLELKDPSFRRHVLVQCLILFDYL 317          
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: E1ZSN2_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZSN2_CHLVA)

HSP 1 Score: 92.8 bits (229), Expect = 9.300e-18
Identity = 81/256 (31.64%), Postives = 118/256 (46.09%), Query Frame = 1
Query:   13 GKVGVLFDAGISLALG--GKVDASLPLVVLERALECCSLRESGELWSLLEERREVFARPSILPRTRNPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLSTPTLPSARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDP---IQVAKSKEAWGSFETSVKRVVEGMERELQARGGGKALGGGXXKAEGEAGVEEAGKVEGRYLTSRGLFRLQLGDVQVQRQVLVELLLVL 765
            G V  L DA + LA      +D  LP  +LE+  E  S+++   +++ L+ R   F  P+     +    K  LL+  N L +RL  S  +  L GR+LLFLA +LPLT++SGVNL G  +T         +EG    EG         A Y  FW LQ    +P   +QV K    WG     ++RV+E    E    G   A G G    +G +          +YL+S  L  LQL D   +R  L++ L+++
Sbjct:   94 GAVAELLDAVLWLAAQKPSPLDVGLPAQLLEQITEGASVQDCEGVFAFLDSRTATFKSPAF----QEARCKNTLLRTCNMLLKRLSKSA-NAMLCGRILLFLAKLLPLTERSGVNLGGAFNTDNSTPVEDVQEGATDSEGKPVDA----AFYRTFWGLQSYFSNPPAALQVGK----WGEVSRDIRRVLEKFRLEKVTVGESAAAGPGAGDGQGSS---------VKYLSSSRLMGLQLRDATFRRHFLLQCLILM 327          
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: A0A3S3P424_9MAGN (THO complex subunit 1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3P424_9MAGN)

HSP 1 Score: 92.8 bits (229), Expect = 9.490e-18
Identity = 73/254 (28.74%), Postives = 119/254 (46.85%), Query Frame = 1
Query:   13 GKVGVLFDAGISLALGGKVDASLPLVVLERALECCSLRESGELWSLLEERREVFARPSILPRTRNPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLSTPTLPSARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDPIQVAKSKEAWGSFETSVKRVVEGMERELQARGGGKALGGGXXKAEGEAGVEEAGKVEGRYLTSRGLFRLQLGDVQVQRQVLVELLLVLGYL 774
            G++  L D  + L   G V+      +LE   E  ++R+  E++  +E ++++  +P +  R      KLV+L+  N L RRL  +  DV+  GR+L FLAH  PL+++S VN+ G  +        +  E K  E+ A +G       Y  FW+LQ+   DP         W  F +++  V++  E +  +   G A              EEA     +YLTS  L  L+L D   +R +LV+ L++  YL
Sbjct:  112 GQIPRLLDIVLYLCEKGHVEGGTIFQLLEDLTEMSTMRDCKEVFGYIESKQDILGKPELFGR-----GKLVMLRTCNQLLRRLSKAN-DVEFCGRILTFLAHFFPLSERSAVNIKGVFN--------KSNETKY-EKDAPDGISVDFNFYKTFWSLQEHFCDPASTTVGPIKWQKFSSNLMVVLDTFEAQPLSEDDGNAN---------HLEEEEAAAFNIKYLTSSKLMGLELKDPSFRRHILVQCLILFNYL 341          
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: I0Z5D1_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z5D1_COCSC)

HSP 1 Score: 92.8 bits (229), Expect = 1.030e-17
Identity = 80/253 (31.62%), Postives = 122/253 (48.22%), Query Frame = 1
Query:   28 LFDAGISLALGGKVDASLPLVVLERALECCSLRESGELWSLLEER----REVFARPSILPRTRNPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLSTPTLPSARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDPIQVAKSKEAWGSFETSVKRVVEGMERE---LQARGGGKALGGGXXKAEGEAGVEEAGKVEGRYLTSRGLFRLQLGDVQVQRQVLVELLLVL 765
            L D  + L    ++D  L   ++E  +E  ++ E+  ++  LE R    R+V+   S         SKL +L++ N L RRL  +    +L GR+L+FL  +LPL D+SG+N+ G  +T          EG  A +  G+  D   A YA FW LQ V   P   A     W +  T +KRV+    ++   L +  GG          EGE G+ EA  +  +YL+S  L RLQL D  ++R  L++ L+ L
Sbjct:   96 LLDLTVYLGSQRQIDTVLVFAIMEDVMELSTIEEAEGVFGYLESRIQKLRQVYNFGSATSH-----SKLSVLRICNQLLRRLSRASSS-ELCGRILMFLTRLLPLLDRSGLNVQGQFNTSHSTPVEDVPEG--AVDSNGQPVDA--AFYATFWGLQDVFQHPY-TAMEPSKWAATITDIKRVLTEFTKQPVALASSSGG----------EGEGGLLEAAALTVKYLSSPKLMRLQLQDATLRRHFLLQALIFL 327          
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: A0A2G5F843_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F843_AQUCA)

HSP 1 Score: 91.3 bits (225), Expect = 1.230e-17
Identity = 70/254 (27.56%), Postives = 120/254 (47.24%), Query Frame = 1
Query:   13 GKVGVLFDAGISLALGGKVDASLPLVVLERALECCSLRESGELWSLLEERREVFARPSILPRTRNPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLSTPTLPSARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDPIQVAKSKEAWGSFETSVKRVVEGMERELQARGGGKALGGGXXKAEGEAGVEEAGKVEGRYLTSRGLFRLQLGDVQVQRQVLVELLLVLGYL 774
            G++  L D  + L   G V+  +   +LE   E  ++R+  E++  +E ++++  +  +  R      KLV+L+  N L RRL  +  DV   GR+L+FLAH  PL+++S VN+ G  +T    +          E+ A  G       Y  FW+LQ+   +P     +   W  F++++  V++  E +  +   GKA              EE+     +YLTS  L  L+L D   +R +LV+ L++  YL
Sbjct:  112 GQIPRLLDIVLFLCEKGHVEGGMIFQLLEDLTEMSTMRDCKEVFGYIESKQDILGKQELFGR-----GKLVMLRTCNQLLRRLSKAN-DVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETNY---------EKDAPNGISIDFNFYKTFWSLQEHFRNPASTTVAPTKWHKFQSNLTVVLDTFEAQPLSDDDGKAN---------NLEEEESAAFNIKYLTSSNLMGLELKDPSFRRHILVQCLILFDYL 341          
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Match: A0A7J7N133_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7N133_9MAGN)

HSP 1 Score: 92.4 bits (228), Expect = 1.290e-17
Identity = 72/254 (28.35%), Postives = 122/254 (48.03%), Query Frame = 1
Query:   13 GKVGVLFDAGISLALGGKVDASLPLVVLERALECCSLRESGELWSLLEERREVFARPSILPRTRNPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRVLLFLAHVLPLTDKSGVNLTGTLSTPTLPSARRQEEGKAAEEGAGEGGDGGDALYAHFWALQKVAGDPIQVAKSKEAWGSFETSVKRVVEGMERELQARGGGKALGGGXXKAEGEAGVEEAGKVEGRYLTSRGLFRLQLGDVQVQRQVLVELLLVLGYL 774
            G++  L D  + L  GG V+  +   +LE   E  ++R+  E++  +E ++++  +  +  R      KLV+L+  N L RRL  +  DV   GR+L+FLAH  PL+++S VN+ G  +T          E K  E+ A +G       Y  FW+LQ+   +P     +   W  F++++  V++  E +  +   G A              EEA     +YLTS  L  L+L D   +R +L++ L++  YL
Sbjct:  112 GQIPRLLDILLYLCEGGHVEGGMIFQLLEDLTEISTMRDCKEVFGYIESKQDILGKQELFMR-----GKLVMLRTCNQLLRRLSKAN-DVVFCGRILMFLAHFFPLSERSAVNIKGVFNT--------SNETKY-EKDAPDGISIDFNFYKTFWSLQEHFSNPAFTTVTPIKWHKFKSNLMVVLDTFEAQPLSEDDGNAN---------NLEEEEAASFSIKYLTSSKLMGLELKDPSFRRHILIQCLILFDYL 341          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81554.19085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812WSX9_9DINO1.940e-2032.13THO1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A5A8DA97_CAFRO5.710e-2031.34Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
R1BCY2_EMIHU1.060e-1833.82Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A2P6V5B9_9CHLO1.140e-1833.62THO complex subunit 1 isoform X1 isoform A n=2 Tax... [more]
A0A830BZ07_9LAMI4.990e-1828.74THO complex subunit 1 n=1 Tax=Phtheirospermum japo... [more]
E1ZSN2_CHLVA9.300e-1831.64Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A3S3P424_9MAGN9.490e-1828.74THO complex subunit 1 n=1 Tax=Cinnamomum micranthu... [more]
I0Z5D1_COCSC1.030e-1731.62Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A2G5F843_AQUCA1.230e-1727.56Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]
A0A7J7N133_9MAGN1.290e-1728.35Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81554contigM-pyrifera_M_contig81554:1..777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue2e-18
Seed eggNOG ortholog2903.EOD07568
KEGG koko:K12878
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
GOsGO:0000160,GO:0000347,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009723,GO:0009725,GO:0009755,GO:0009873,GO:0009892,GO:0009987,GO:0010033,GO:0010267,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030422,GO:0031047,GO:0031050,GO:0031503,GO:0032774,GO:0032870,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035556,GO:0040029,GO:0042221,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070727,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071369,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0097659,GO:0098542,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901699
EggNOG free text desc.negative regulation of isotype switching to IgA isotypes
EggNOG OGsKOG2491@1,KOG2491@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons1
Model size777
Cds size777
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.3474007-CDS-M-pyrifera_M_contig81554:0..7771622816722.3474007-CDS-M-pyrifera_M_contig81554:0..777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81554 1..777 -
1692278140.4705956-CDS-M-pyrifera_M_contig81554:0..7771692278140.4705956-CDS-M-pyrifera_M_contig81554:0..777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81554 1..777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81554.19085.1prot_M-pyrifera_M_contig81554.19085.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81554 1..777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81554.19085.1

>prot_M-pyrifera_M_contig81554.19085.1 ID=prot_M-pyrifera_M_contig81554.19085.1|Name=mRNA_M-pyrifera_M_contig81554.19085.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=259bp
AGLAGKVGVLFDAGISLALGGKVDASLPLVVLERALECCSLRESGELWSL
LEERREVFARPSILPRTRNPPSKLVLLQLSNGLFRRLGHSQRDVQLRGRV
LLFLAHVLPLTDKSGVNLTGTLSTPTLPSARRQEEGKAAEEGAGEGGDGG
DALYAHFWALQKVAGDPIQVAKSKEAWGSFETSVKRVVEGMERELQARGG
GKALGGGGGKAEGEAGVEEAGKVEGRYLTSRGLFRLQLGDVQVQRQVLVE
LLLVLGYLL
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mRNA from alignment at M-pyrifera_M_contig81554:1..777-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81554.19085.1 ID=mRNA_M-pyrifera_M_contig81554.19085.1|Name=mRNA_M-pyrifera_M_contig81554.19085.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=777bp|location=Sequence derived from alignment at M-pyrifera_M_contig81554:1..777- (Macrocystis pyrifera P11B4 male)
GCAGGGTTGGCTGGGAAGGTTGGAGTTTTGTTCGATGCCGGGATTTCTCT GGCGCTGGGGGGCAAAGTGGACGCTTCTCTGCCTCTGGTGGTGCTGGAGC GCGCGCTGGAGTGCTGCAGCCTCCGAGAGAGCGGGGAGTTGTGGAGTTTG CTTGAGGAGCGACGGGAAGTGTTTGCTCGGCCCTCTATTCTGCCTAGAAC TCGAAACCCACCCAGCAAACTGGTGCTCCTGCAGCTCTCAAACGGGCTCT TTCGGCGACTCGGCCACAGCCAGCGAGACGTGCAGCTGCGAGGCAGAGTG TTGCTCTTTCTCGCCCACGTCCTGCCTCTCACCGACAAGAGCGGCGTCAA CCTCACTGGAACGCTCTCCACGCCCACCCTCCCTTCTGCCAGACGCCAGG AAGAGGGCAAAGCGGCGGAGGAAGGAGCTGGGGAAGGTGGGGATGGTGGG GATGCGCTGTATGCGCACTTTTGGGCGTTGCAAAAAGTTGCTGGAGATCC CATTCAAGTGGCCAAGAGCAAGGAGGCTTGGGGTTCGTTTGAGACCAGTG TGAAGCGGGTGGTGGAGGGGATGGAGAGGGAACTGCAGGCGAGAGGAGGA GGGAAGGCCTTGGGAGGGGGAGGAGGGAAGGCGGAAGGGGAAGCGGGAGT GGAGGAAGCGGGGAAGGTGGAAGGGAGGTATCTCACCTCGAGGGGTTTGT TTCGATTGCAACTGGGAGATGTACAAGTGCAGAGACAAGTCTTGGTGGAG CTTCTGCTTGTCCTTGGCTACCTCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81554:1..777-

>mRNA_M-pyrifera_M_contig81554.19085.1 ID=mRNA_M-pyrifera_M_contig81554.19085.1|Name=mRNA_M-pyrifera_M_contig81554.19085.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1554bp|location=Sequence derived from alignment at M-pyrifera_M_contig81554:1..777- (Macrocystis pyrifera P11B4 male)
GCAGGGTTGGCTGGGAAGGTTGGAGTTTTGTTCGATGCCGGGATTTCTCT
GGCGCTGGGGGGCAAAGTGGACGCTTCTCTGCCTCTGGTGGTGCTGGAGC
GCGCGCTGGAGTGCTGCAGCCTCCGAGAGAGCGGGGAGTTGTGGAGTTTG
CTTGAGGAGCGACGGGAAGTGTTTGCTCGGCCCTCTATTCTGCCTAGAAC
TCGAAACCCACCCAGCAAACTGGTGCTCCTGCAGCTCTCAAACGGGCTCT
TTCGGCGACTCGGCCACAGCCAGCGAGACGTGCAGCTGCGAGGCAGAGTG
TTGCTCTTTCTCGCCCACGTCCTGCCTCTCACCGACAAGAGCGGCGTCAA
CCTCACTGGAACGCTCTCCACGCCCACCCTCCCTTCTGCCAGACGCCAGG
AAGAGGGCAAAGCGGCGGAGGAAGGAGCTGGGGAAGGTGGGGATGGTGGG
GATGCGCTGTATGCGCACTTTTGGGCGTTGCAAAAAGTTGCTGGAGATCC
CATTCAAGTGGCCAAGAGCAAGGAGGCTTGGGGTTCGTTTGAGACCAGTG
TGAAGCGGGTGGTGGAGGGGATGGAGAGGGAACTGCAGGCGAGAGGAGGA
GGGAAGGCCTTGGGAGGGGGAGGAGGGAAGGCGGAAGGGGAAGCGGGAGT
GGAGGAAGCGGGGAAGGTGGAAGGGAGGTATCTCACCTCGAGGGGTTTGT
TTCGATTGCAACTGGGAGATGTACAAGTGCAGAGACAAGTCTTGGTGGAG
CTTCTGCTTGTCCTTGGCTACCTCCTCGCAGGGTTGGCTGGGAAGGTTGG
AGTTTTGTTCGATGCCGGGATTTCTCTGGCGCTGGGGGGCAAAGTGGACG
CTTCTCTGCCTCTGGTGGTGCTGGAGCGCGCGCTGGAGTGCTGCAGCCTC
CGAGAGAGCGGGGAGTTGTGGAGTTTGCTTGAGGAGCGACGGGAAGTGTT
TGCTCGGCCCTCTATTCTGCCTAGAACTCGAAACCCACCCAGCAAACTGG
TGCTCCTGCAGCTCTCAAACGGGCTCTTTCGGCGACTCGGCCACAGCCAG
CGAGACGTGCAGCTGCGAGGCAGAGTGTTGCTCTTTCTCGCCCACGTCCT
GCCTCTCACCGACAAGAGCGGCGTCAACCTCACTGGAACGCTCTCCACGC
CCACCCTCCCTTCTGCCAGACGCCAGGAAGAGGGCAAAGCGGCGGAGGAA
GGAGCTGGGGAAGGTGGGGATGGTGGGGATGCGCTGTATGCGCACTTTTG
GGCGTTGCAAAAAGTTGCTGGAGATCCCATTCAAGTGGCCAAGAGCAAGG
AGGCTTGGGGTTCGTTTGAGACCAGTGTGAAGCGGGTGGTGGAGGGGATG
GAGAGGGAACTGCAGGCGAGAGGAGGAGGGAAGGCCTTGGGAGGGGGAGG
AGGGAAGGCGGAAGGGGAAGCGGGAGTGGAGGAAGCGGGGAAGGTGGAAG
GGAGGTATCTCACCTCGAGGGGTTTGTTTCGATTGCAACTGGGAGATGTA
CAAGTGCAGAGACAAGTCTTGGTGGAGCTTCTGCTTGTCCTTGGCTACCT
CCTC
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