mRNA_M-pyrifera_M_contig81550.19083.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81550.19083.1
Unique NamemRNA_M-pyrifera_M_contig81550.19083.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81550.19083.1 vs. uniprot
Match: A0A353ZEA6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353ZEA6_9PLAN)

HSP 1 Score: 53.5 bits (127), Expect = 2.810e-6
Identity = 32/88 (36.36%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:    4 IAGIAPITDTGGTFRLR--HFVGDGVGIQDSSSSLGAFLPLSASDEFLFFDGQYSLTNEANSVGNLGLGFREFNPANNRLWGVSLWYD 261
            IAG A   D GG  + R  H  G G+      + +  F       + LF D ++ +TN     GNLG G+R F P  +R++G SLWYD
Sbjct:   38 IAGTAVRADDGGGVQARIGHIEGQGIPQVQPVTPIELFPYYEFDQQLLFNDSRFVITNSGGLGGNLGFGYRFFEPETDRVYGGSLWYD 125
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BLAST of mRNA_M-pyrifera_M_contig81550.19083.1 vs. uniprot
Match: A0A518IPT2_9BACT (Uncharacterized protein n=2 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518IPT2_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.340e-5
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 1 
Query:   34 GGTFRLRHFVGDGVGIQDSSSSLGAFLPLS--ASDEFLFFDGQYSLTNEANSV--GNLGLGFREFNPANNRLWGVSLWYD 261
            G  + L H  G+GVG+ D  + +GAF+PL   +SD   F D    L NE      GNLG G R F+   NR++G   +YD
Sbjct:   41 GARYGLGHVAGEGVGLDDGYTRIGAFVPLMQPSSDVLFFTDTHLLLYNEQTEAKGGNLGGGVRYFDATMNRIFGGYTYYD 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81550.19083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A353ZEA6_9PLAN2.810e-636.36Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A518IPT2_9BACT1.340e-540.00Uncharacterized protein n=2 Tax=Rosistilla oblonga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81550contigM-pyrifera_M_contig81550:3..263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.2803802-CDS-M-pyrifera_M_contig81550:2..2631622816722.2803802-CDS-M-pyrifera_M_contig81550:2..263Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81550 3..263 -
1692278140.443017-CDS-M-pyrifera_M_contig81550:2..2631692278140.443017-CDS-M-pyrifera_M_contig81550:2..263Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81550 3..263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81550.19083.1prot_M-pyrifera_M_contig81550.19083.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81550 3..263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81550.19083.1

>prot_M-pyrifera_M_contig81550.19083.1 ID=prot_M-pyrifera_M_contig81550.19083.1|Name=mRNA_M-pyrifera_M_contig81550.19083.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
NIAGIAPITDTGGTFRLRHFVGDGVGIQDSSSSLGAFLPLSASDEFLFFD
GQYSLTNEANSVGNLGLGFREFNPANNRLWGVSLWYD
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mRNA from alignment at M-pyrifera_M_contig81550:3..263-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81550.19083.1 ID=mRNA_M-pyrifera_M_contig81550.19083.1|Name=mRNA_M-pyrifera_M_contig81550.19083.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig81550:3..263- (Macrocystis pyrifera P11B4 male)
AATATCGCAGGCATCGCCCCGATAACGGACACCGGCGGAACCTTTCGCTT
GCGACACTTCGTCGGCGATGGTGTAGGCATCCAAGACAGCTCCAGTTCGC
TGGGCGCCTTTCTTCCGCTGAGTGCTTCCGACGAATTCCTCTTCTTCGAC
GGACAGTATTCGTTGACCAACGAAGCAAACTCGGTGGGCAACCTGGGCCT
GGGATTTCGGGAATTCAATCCTGCCAACAATCGGCTTTGGGGCGTGAGCC
TGTGGTACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81550:3..263-

>mRNA_M-pyrifera_M_contig81550.19083.1 ID=mRNA_M-pyrifera_M_contig81550.19083.1|Name=mRNA_M-pyrifera_M_contig81550.19083.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig81550:3..263- (Macrocystis pyrifera P11B4 male)
AATATCGCAGGCATCGCCCCGATAACGGACACCGGCGGAACCTTTCGCTT
GCGACACTTCGTCGGCGATGGTGTAGGCATCCAAGACAGCTCCAGTTCGC
TGGGCGCCTTTCTTCCGCTGAGTGCTTCCGACGAATTCCTCTTCTTCGAC
GGACAGTATTCGTTGACCAACGAAGCAAACTCGGTGGGCAACCTGGGCCT
GGGATTTCGGGAATTCAATCCTGCCAACAATCGGCTTTGGGGCGTGAGCC
TGTGGTACGACAATATCGCAGGCATCGCCCCGATAACGGACACCGGCGGA
ACCTTTCGCTTGCGACACTTCGTCGGCGATGGTGTAGGCATCCAAGACAG
CTCCAGTTCGCTGGGCGCCTTTCTTCCGCTGAGTGCTTCCGACGAATTCC
TCTTCTTCGACGGACAGTATTCGTTGACCAACGAAGCAAACTCGGTGGGC
AACCTGGGCCTGGGATTTCGGGAATTCAATCCTGCCAACAATCGGCTTTG
GGGCGTGAGCCTGTGGTACGAC
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