mRNA_M-pyrifera_M_contig81029.18954.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81029.18954.1
Unique NamemRNA_M-pyrifera_M_contig81029.18954.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81029.18954.1 vs. uniprot
Match: A0A5A8B3U0_9PLAN (Carboxypeptidase regulatory-like domain-containing protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A5A8B3U0_9PLAN)

HSP 1 Score: 159 bits (402), Expect = 3.600e-46
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 LPQMFYATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPAKDKGTLTVQLTPKPPAPEQDRKP 228
            LPQMFYATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPAKDKGTLTVQLTPKPPAPEQD KP
Sbjct:  279 LPQMFYATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPAKDKGTLTVQLTPKPPAPEQDHKP 354          
BLAST of mRNA_M-pyrifera_M_contig81029.18954.1 vs. uniprot
Match: A0A6I6AE29_9PLAN (Carboxypeptidase regulatory-like domain-containing protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AE29_9PLAN)

HSP 1 Score: 129 bits (324), Expect = 1.690e-34
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    1 LPQMFYATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPAKDKGTLTVQLTPKPPAPEQDRKP 228
            LP MFY T+Q+ QTTD  GTTVFAW+PHWQKQR+Y  ++ R+YIPHRI Y+P+KDKGTLTVQLTPKPPAPEQDRKP
Sbjct:  288 LPLMFYVTRQLEQTTDNAGTTVFAWLPHWQKQRIYFWVKNREYIPHRIAYEPSKDKGTLTVQLTPKPPAPEQDRKP 363          
BLAST of mRNA_M-pyrifera_M_contig81029.18954.1 vs. uniprot
Match: A0A517PZN2_9PLAN (Bacterial Ig-like domain (Group 1) n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517PZN2_9PLAN)

HSP 1 Score: 109 bits (272), Expect = 5.850e-27
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 LPQMFYATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPAKDKGTLTVQLTPKPPAPEQDRKP 228
            LP MFYAT+Q+ Q TD  G TVFAWIPHWQ QRMY  ++ ++Y+PHRI Y+P+KDKGTLTV+L+PKP  PE+   P
Sbjct:  275 LPLMFYATRQLVQPTDETGATVFAWIPHWQNQRMYFGVKNKEYVPHRITYEPSKDKGTLTVRLSPKPKEPEKGSTP 350          
BLAST of mRNA_M-pyrifera_M_contig81029.18954.1 vs. uniprot
Match: A6CC14_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A6CC14_9PLAN)

HSP 1 Score: 97.8 bits (242), Expect = 1.420e-22
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   10 MFYATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPAKDKGTLTVQLTPK 198
            MFY T+Q+ QTTD  GT VFAWIPHWQKQRMY  +  ++YIPHR  Y+PAKDKG   VQL PK
Sbjct:  283 MFYTTRQLVQTTDGTGTIVFAWIPHWQKQRMYFGVHNKEYIPHRFVYEPAKDKGAFKVQLKPK 345          
BLAST of mRNA_M-pyrifera_M_contig81029.18954.1 vs. uniprot
Match: A0A517PG46_9PLAN (Nickel uptake substrate-specific transmembrane region n=4 Tax=Gimesia TaxID=1649453 RepID=A0A517PG46_9PLAN)

HSP 1 Score: 63.2 bits (152), Expect = 7.700e-10
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 LPQMFYATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPAKDKGTLTVQL 189
            L  +FY    + QTTDA+G TVF WIPHWQKQ++ +      Y   R  Y PA  KG LT++L
Sbjct:  274 LGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMEL 336          
BLAST of mRNA_M-pyrifera_M_contig81029.18954.1 vs. uniprot
Match: A0A517R868_9PLAN (Nickel uptake substrate-specific transmembrane region n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R868_9PLAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.560e-7
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   16 YATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPAKDKGTLTVQL 189
            + T  + QTTDA+GT VF WIP WQK  + +   +++++  R  YDP    GTLT++L
Sbjct:  324 FFTSLVEQTTDAEGTVVFQWIPGWQKLPLTIWPRDKEHVLQRGNYDPKTGDGTLTIKL 381          
BLAST of mRNA_M-pyrifera_M_contig81029.18954.1 vs. uniprot
Match: A0A518G6J6_9BACT (Bacterial Ig-like domain (Group 1) n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518G6J6_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 3.190e-5
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1
Query:   16 YATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPAKDKGTLTVQL 189
            Y    +TQ +D QG T FAW+P WQ+Q + L  +   Y   R+ YDPAK+   +   L
Sbjct:  270 YLAASVTQVSDRQGETTFAWLPKWQQQIVTLWPQAEGYEHIRVHYDPAKELQPVRATL 327          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81029.18954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8B3U0_9PLAN3.600e-4698.68Carboxypeptidase regulatory-like domain-containing... [more]
A0A6I6AE29_9PLAN1.690e-3476.32Carboxypeptidase regulatory-like domain-containing... [more]
A0A517PZN2_9PLAN5.850e-2763.16Bacterial Ig-like domain (Group 1) n=2 Tax=Gimesia... [more]
A6CC14_9PLAN1.420e-2266.67Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A517PG46_9PLAN7.700e-1047.62Nickel uptake substrate-specific transmembrane reg... [more]
A0A517R868_9PLAN1.560e-743.10Nickel uptake substrate-specific transmembrane reg... [more]
A0A518G6J6_9BACT3.190e-539.66Bacterial Ig-like domain (Group 1) n=1 Tax=Aurelie... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81029contigM-pyrifera_M_contig81029:707..937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score99.0
Seed ortholog evalue9.9e-19
Seed eggNOG ortholog344747.PM8797T_08804
KEGG koko:K06196
KEGG TC5.A.1.2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,COG0526@2
COG Functional cat.CO
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size231
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.6927264-CDS-M-pyrifera_M_contig81029:706..9281622816715.6927264-CDS-M-pyrifera_M_contig81029:706..928Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81029 707..928 -
1692278136.6347525-CDS-M-pyrifera_M_contig81029:706..9281692278136.6347525-CDS-M-pyrifera_M_contig81029:706..928Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81029 707..928 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.703845-UTR-M-pyrifera_M_contig81029:928..9371622816715.703845-UTR-M-pyrifera_M_contig81029:928..937Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81029 929..937 -
1692278136.6459186-UTR-M-pyrifera_M_contig81029:928..9371692278136.6459186-UTR-M-pyrifera_M_contig81029:928..937Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81029 929..937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81029.18954.1prot_M-pyrifera_M_contig81029.18954.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81029 707..928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81029.18954.1

>prot_M-pyrifera_M_contig81029.18954.1 ID=prot_M-pyrifera_M_contig81029.18954.1|Name=mRNA_M-pyrifera_M_contig81029.18954.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MFYATQQITQTTDAQGTTVFAWIPHWQKQRMYLVLEERKYIPHRIFYDPA
KDKGTLTVQLTPKPPAPEQDRKP*
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mRNA from alignment at M-pyrifera_M_contig81029:707..937-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81029.18954.1 ID=mRNA_M-pyrifera_M_contig81029.18954.1|Name=mRNA_M-pyrifera_M_contig81029.18954.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig81029:707..937- (Macrocystis pyrifera P11B4 male)
CTGCCCCAGATGTTCTACGCAACCCAGCAGATCACACAGACGACCGATGC CCAGGGCACCACCGTCTTCGCCTGGATCCCCCATTGGCAGAAGCAGCGGA TGTATCTGGTTCTCGAAGAGAGGAAATATATTCCGCACCGCATCTTTTAC GATCCAGCCAAAGACAAGGGCACCTTAACAGTCCAACTCACCCCCAAACC ACCGGCGCCAGAACAAGACCGCAAACCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81029:707..937-

>mRNA_M-pyrifera_M_contig81029.18954.1 ID=mRNA_M-pyrifera_M_contig81029.18954.1|Name=mRNA_M-pyrifera_M_contig81029.18954.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig81029:707..937- (Macrocystis pyrifera P11B4 male)
ATGTTCTACGCAACCCAGCAGATCACACAGACGACCGATGCCCAGGGCAC
CACCGTCTTCGCCTGGATCCCCCATTGGCAGAAGCAGCGGATGTATCTGG
TTCTCGAAGAGAGGAAATATATTCCGCACCGCATCTTTTACGATCCAGCC
AAAGACAAGGGCACCTTAACAGTCCAACTCACCCCCAAACCACCGGCGCC
AGAACAAGACCGCAAACCCTGAATGTTCTACGCAACCCAGCAGATCACAC
AGACGACCGATGCCCAGGGCACCACCGTCTTCGCCTGGATCCCCCATTGG
CAGAAGCAGCGGATGTATCTGGTTCTCGAAGAGAGGAAATATATTCCGCA
CCGCATCTTTTACGATCCAGCCAAAGACAAGGGCACCTTAACAGTCCAAC
TCACCCCCAAACCACCGGCGCCAGAACAAGACCGCAAACCCTGA
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