mRNA_M-pyrifera_M_contig80502.18861.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80502.18861.1
Unique NamemRNA_M-pyrifera_M_contig80502.18861.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80502.18861.1 vs. uniprot
Match: A0A316UVT4_9BASI (WD40 repeat-like protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UVT4_9BASI)

HSP 1 Score: 50.1 bits (118), Expect = 9.950e-5
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 1 
Query:   13 ADKVVATGCDDGSVVLVGVETGARLPALH-HGESVTHLSFSSSSRYLASGSESL-LKVWDLKHRRGGVPLLEYALSSPLVSVSFDRSQRRVL-AVLESGTALLWEL 321
            A + +A    D +V +  +ET + +  L  H   VT L +SS+ R+L SGS    + VWDLK R GG         +P+  V+F     RVL  VLES  A++ +L
Sbjct:   42 AGQYIAAARADCAVAIYDLETRSLVRFLEGHVRPVTSLDWSSTGRFLVSGSMDWNVVVWDLKKREGGARTRTIRFDAPVSQVTFAPGTSRVLLVVLESQQAIVVDL 147
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80502.18861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A316UVT4_9BASI9.950e-535.85WD40 repeat-like protein n=1 Tax=Jaminaea rosea Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80502contigM-pyrifera_M_contig80502:256..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.9487367-CDS-M-pyrifera_M_contig80502:255..5851622816710.9487367-CDS-M-pyrifera_M_contig80502:255..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80502 256..585 -
1692278134.2937005-CDS-M-pyrifera_M_contig80502:255..5851692278134.2937005-CDS-M-pyrifera_M_contig80502:255..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80502 256..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80502.18861.1prot_M-pyrifera_M_contig80502.18861.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80502 256..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80502.18861.1

>prot_M-pyrifera_M_contig80502.18861.1 ID=prot_M-pyrifera_M_contig80502.18861.1|Name=mRNA_M-pyrifera_M_contig80502.18861.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MFWSADKVVATGCDDGSVVLVGVETGARLPALHHGESVTHLSFSSSSRYL
ASGSESLLKVWDLKHRRGGVPLLEYALSSPLVSVSFDRSQRRVLAVLESG
TALLWELEDI
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mRNA from alignment at M-pyrifera_M_contig80502:256..585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80502.18861.1 ID=mRNA_M-pyrifera_M_contig80502.18861.1|Name=mRNA_M-pyrifera_M_contig80502.18861.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig80502:256..585- (Macrocystis pyrifera P11B4 male)
ATGTTTTGGAGTGCAGATAAGGTAGTTGCGACGGGCTGTGATGATGGTAG
TGTTGTTTTAGTTGGGGTTGAGACTGGGGCAAGGCTCCCAGCGTTGCATC
ATGGCGAGTCTGTGACACATTTATCCTTCAGCTCGTCTTCTCGATATTTG
GCGAGTGGATCAGAGAGTTTGTTAAAAGTATGGGATTTAAAACACCGTCG
TGGAGGTGTTCCTTTGTTGGAATATGCACTTTCGTCACCTCTCGTGTCTG
TCAGTTTTGACCGGAGCCAACGTCGCGTTTTGGCTGTCTTGGAGAGTGGG
ACTGCCCTTCTTTGGGAGTTGGAGGATATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80502:256..585-

>mRNA_M-pyrifera_M_contig80502.18861.1 ID=mRNA_M-pyrifera_M_contig80502.18861.1|Name=mRNA_M-pyrifera_M_contig80502.18861.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig80502:256..585- (Macrocystis pyrifera P11B4 male)
ATGTTTTGGAGTGCAGATAAGGTAGTTGCGACGGGCTGTGATGATGGTAG
TGTTGTTTTAGTTGGGGTTGAGACTGGGGCAAGGCTCCCAGCGTTGCATC
ATGGCGAGTCTGTGACACATTTATCCTTCAGCTCGTCTTCTCGATATTTG
GCGAGTGGATCAGAGAGTTTGTTAAAAGTATGGGATTTAAAACACCGTCG
TGGAGGTGTTCCTTTGTTGGAATATGCACTTTCGTCACCTCTCGTGTCTG
TCAGTTTTGACCGGAGCCAACGTCGCGTTTTGGCTGTCTTGGAGAGTGGG
ACTGCCCTTCTTTGGGAGTTGGAGGATATTATGTTTTGGAGTGCAGATAA
GGTAGTTGCGACGGGCTGTGATGATGGTAGTGTTGTTTTAGTTGGGGTTG
AGACTGGGGCAAGGCTCCCAGCGTTGCATCATGGCGAGTCTGTGACACAT
TTATCCTTCAGCTCGTCTTCTCGATATTTGGCGAGTGGATCAGAGAGTTT
GTTAAAAGTATGGGATTTAAAACACCGTCGTGGAGGTGTTCCTTTGTTGG
AATATGCACTTTCGTCACCTCTCGTGTCTGTCAGTTTTGACCGGAGCCAA
CGTCGCGTTTTGGCTGTCTTGGAGAGTGGGACTGCCCTTCTTTGGGAGTT
GGAGGATATT
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