mRNA_M-pyrifera_M_contig80495.18853.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80495.18853.1
Unique NamemRNA_M-pyrifera_M_contig80495.18853.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: A0A5A8DP02_CAFRO (RING-type domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DP02_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 1.960e-15
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   19 TVCKICLGTFEEGERLRLLPCLHQFHTTCADRWLVEKAECPICKTSIR 162
            T C +CL  F  GE LRLLPC+H FH  C DRWL EKAECP+CK+SIR
Sbjct:  144 TRCLVCLEDFVPGETLRLLPCIHFFHAKCIDRWLGEKAECPVCKSSIR 191
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: A0A5A8CCH3_CAFRO (RING-type domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8CCH3_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 4.690e-15
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   19 TVCKICLGTFEEGERLRLLPCLHQFHTTCADRWLVEKAECPICKTSIR 162
            T C +CL  F  GE LRLLPC+H FH  C DRWL EKAECP+CK+SIR
Sbjct:  200 TRCLVCLEDFVPGETLRLLPCIHFFHAKCIDRWLGEKAECPVCKSSIR 247
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: A0A118K468_CYNCS (RING-type E3 ubiquitin transferase n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K468_CYNCS)

HSP 1 Score: 73.9 bits (180), Expect = 5.800e-15
Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 SPSSKPTVCKICLGTFEEGERLRLLP-CLHQFHTTCADRWLVEKAECPICKTSIRVSA 171
            +PS++ + C ICLG FEEGE++++LP C H +H  C D+WL+ ++ CPIC+TS R+ +
Sbjct:   88 APSTELSECSICLGVFEEGEKVKVLPSCCHCYHCECVDKWLITRSSCPICRTSARIDS 145
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: A0A251TU41_HELAN (RING-type E3 ubiquitin transferase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TU41_HELAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.190e-14
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   25 CKICLGTFEEGERLRLLP-CLHQFHTTCADRWLVEKAECPICKTSIRVSA 171
            C ICLG FEEGE++++LP C H++H  C D+WLV  + CPIC+TS+RV +
Sbjct:  104 CTICLGVFEEGEKVKVLPVCYHRYHCECVDKWLVTHSSCPICRTSVRVDS 153
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: A0A5N6NGD7_9ASTR (RING-type E3 ubiquitin transferase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NGD7_9ASTR)

HSP 1 Score: 70.9 bits (172), Expect = 4.260e-14
Identity = 25/50 (50.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   25 CKICLGTFEEGERLRLLP-CLHQFHTTCADRWLVEKAECPICKTSIRVSA 171
            C ICLG FE+GE++++LP C H++H  C D+WL+ ++ CP+C+TS+RV +
Sbjct:   99 CSICLGVFEDGEKVKVLPVCCHRYHCECVDKWLLTQSSCPVCRTSVRVDS 148
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: X6NVD9_RETFI (RING-type domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NVD9_RETFI)

HSP 1 Score: 71.2 bits (173), Expect = 8.920e-14
Identity = 25/46 (54.35%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   25 CKICLGTFEEGERLRLLPCLHQFHTTCADRWLVEKAECPICKTSIR 162
            C ICL +F+E +R+R+LPC H+FH  CAD+WL++K+ CP+C+  IR
Sbjct:  152 CAICLVSFQERDRIRILPCTHEFHVPCADKWLLQKSTCPVCRLDIR 197
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: A0A7S1HED0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HED0_HEMAN)

HSP 1 Score: 70.9 bits (172), Expect = 1.290e-13
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   25 CKICLGTFEEGERLRLLPCLHQFHTTCADRWLVEKAECPICKTSIR 162
            C ICL  FE+G+ +R+LPCLH +H  CAD+WL     CP+CKT I+
Sbjct:  122 CSICLAAFEDGDEIRMLPCLHPYHKACADQWLSNHTSCPVCKTDIK 167
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: UPI000740423C (E3 ubiquitin ligase BIG BROTHER-related-like n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI000740423C)

HSP 1 Score: 71.6 bits (174), Expect = 2.120e-13
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    7 SSKPTVCKICLGTFEEGERLRLLPCLHQFHTTCADRWLVEKAECPICKTSIRV 165
            S+  T C+IC   + EGE+LR+LPCLH +H  C DRWL E A CP+C+  + +
Sbjct:  255 SAGKTECQICFSDYREGEQLRVLPCLHDYHAKCIDRWLKENASCPVCRVDVTI 307
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: A0A7S0SWH3_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWH3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.280e-13
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   25 CKICLGTFEEGERLRLLPCLHQFHTTCADRWLVEKAECPICKTSI 159
            C ICLG FE+G+ LR L CLHQFH  C D WL + A CPICK SI
Sbjct:  155 CSICLGPFEDGDTLRTLFCLHQFHLHCVDNWLRQNASCPICKASI 199
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BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Match: UPI001155A5AB (E3 ubiquitin-protein ligase RLIM-like n=1 Tax=Suricata suricatta TaxID=37032 RepID=UPI001155A5AB)

HSP 1 Score: 71.2 bits (173), Expect = 2.570e-13
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   25 CKICLGTFEEGERLRLLPCLHQFHTTCADRWLVEKAECPICKTSIRVSA 171
            C IC+  + EG R+R+LPC HQFH  C DRWL E + CPIC+T +  SA
Sbjct:  237 CAICITEYTEGNRVRILPCTHQFHVDCVDRWLSENSTCPICRTEVAYSA 285
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80495.18853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DP02_CAFRO1.960e-1566.67RING-type domain-containing protein n=1 Tax=Cafete... [more]
A0A5A8CCH3_CAFRO4.690e-1566.67RING-type domain-containing protein n=2 Tax=Sar Ta... [more]
A0A118K468_CYNCS5.800e-1548.28RING-type E3 ubiquitin transferase n=1 Tax=Cynara ... [more]
A0A251TU41_HELAN1.190e-1456.00RING-type E3 ubiquitin transferase n=1 Tax=Heliant... [more]
A0A5N6NGD7_9ASTR4.260e-1450.00RING-type E3 ubiquitin transferase n=1 Tax=Mikania... [more]
X6NVD9_RETFI8.920e-1454.35RING-type domain-containing protein n=1 Tax=Reticu... [more]
A0A7S1HED0_HEMAN1.290e-1354.35Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
UPI000740423C2.120e-1349.06E3 ubiquitin ligase BIG BROTHER-related-like n=1 T... [more]
A0A7S0SWH3_9STRA2.280e-1364.44Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
UPI001155A5AB2.570e-1355.10E3 ubiquitin-protein ligase RLIM-like n=1 Tax=Suri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80495contigM-pyrifera_M_contig80495:682..852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.8
Seed ortholog evalue5.9e-11
Seed eggNOG ortholog27923.ML276927a-PA
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.RING-like zinc finger
EggNOG OGs3A379@33154,3BUXT@33208,KOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.637135-CDS-M-pyrifera_M_contig80495:681..8521622816710.637135-CDS-M-pyrifera_M_contig80495:681..852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80495 682..852 -
1692278134.1533363-CDS-M-pyrifera_M_contig80495:681..8521692278134.1533363-CDS-M-pyrifera_M_contig80495:681..852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80495 682..852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80495.18853.1prot_M-pyrifera_M_contig80495.18853.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80495 682..852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80495.18853.1

>prot_M-pyrifera_M_contig80495.18853.1 ID=prot_M-pyrifera_M_contig80495.18853.1|Name=mRNA_M-pyrifera_M_contig80495.18853.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
SPSSKPTVCKICLGTFEEGERLRLLPCLHQFHTTCADRWLVEKAECPICK
TSIRVSA
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mRNA from alignment at M-pyrifera_M_contig80495:682..852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80495.18853.1 ID=mRNA_M-pyrifera_M_contig80495.18853.1|Name=mRNA_M-pyrifera_M_contig80495.18853.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig80495:682..852- (Macrocystis pyrifera P11B4 male)
TCCCCTTCTTCCAAACCTACAGTGTGCAAAATCTGTCTTGGCACATTCGA
AGAAGGGGAGCGTCTTCGCCTTCTCCCTTGTCTCCATCAGTTTCACACCA
CATGCGCCGATCGATGGTTGGTGGAGAAGGCAGAATGCCCCATATGCAAA
ACTTCCATCCGAGTCTCAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80495:682..852-

>mRNA_M-pyrifera_M_contig80495.18853.1 ID=mRNA_M-pyrifera_M_contig80495.18853.1|Name=mRNA_M-pyrifera_M_contig80495.18853.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig80495:682..852- (Macrocystis pyrifera P11B4 male)
TCCCCTTCTTCCAAACCTACAGTGTGCAAAATCTGTCTTGGCACATTCGA
AGAAGGGGAGCGTCTTCGCCTTCTCCCTTGTCTCCATCAGTTTCACACCA
CATGCGCCGATCGATGGTTGGTGGAGAAGGCAGAATGCCCCATATGCAAA
ACTTCCATCCGAGTCTCAGCATCCCCTTCTTCCAAACCTACAGTGTGCAA
AATCTGTCTTGGCACATTCGAAGAAGGGGAGCGTCTTCGCCTTCTCCCTT
GTCTCCATCAGTTTCACACCACATGCGCCGATCGATGGTTGGTGGAGAAG
GCAGAATGCCCCATATGCAAAACTTCCATCCGAGTCTCAGCA
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