mRNA_M-pyrifera_M_contig80418.18835.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80418.18835.1
Unique NamemRNA_M-pyrifera_M_contig80418.18835.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: UPI0019C8FE25 (PspC domain-containing protein n=1 Tax=Pseudonocardia sp. TaxID=60912 RepID=UPI0019C8FE25)

HSP 1 Score: 54.7 bits (130), Expect = 2.680e-8
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    4 PFTRSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPD 195
            P  RS  DR LAG+ GG GR L +DP  LR+ LV  T+  A  G       +V Y+AAW LVP+
Sbjct:   11 PLQRSRSDRMLAGVCGGAGRHLDIDPTLLRLALVLLTVFGAGIG-------VVLYVAAWILVPE 67          
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A0Q7ZN17_9ACTN (Uncharacterized protein n=3 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q7ZN17_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 3.540e-8
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDGSGRS 210
            RS  DR++AG+AGG GR L VDP  LR+    A ++L   GG G    L+ Y+A W LVP+ +GRS
Sbjct:   47 RSSYDRHVAGVAGGLGRHLDVDPVILRV----AFVVLTFFGGAG----LIIYVACWLLVPEDTGRS 104          
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A3N0CQB5_9ACTN (PspC domain-containing protein n=2 Tax=Marmoricola ginsengisoli TaxID=661483 RepID=A0A3N0CQB5_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.580e-7
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDG 198
            RS+ D+ +AG+ GG GR LGVDP  +R+G V A ++       GF   +VAY  AW ++P G
Sbjct:    2 RSNDDKMVAGVCGGLGRYLGVDPTLVRVGAVVALVI-------GFPATIVAYAVAWAIMPQG 56          
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A535UGJ2_9CHLR (PspC domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535UGJ2_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 1.920e-7
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    7 FTRSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDGSGRS 210
            FTRS  DR L G+AGG GRRLGVDP  +R    GA +LLA  GG G  +    Y+ AW +  D  G +
Sbjct:  127 FTRSADDRVLTGVAGGLGRRLGVDPLLVR----GAFVLLAVAGGSGVGI----YILAWLVSHDPEGAA 186          
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A7C2HVJ7_9ACTN (PspC domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C2HVJ7_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 2.070e-7
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   34 LAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPD-GSGRSL 213
            +AG+ GG GR LGVDP  LRI    A ++LA  GGGG    L+AY+ AW L+P+ G G  L
Sbjct:    2 IAGVCGGLGRYLGVDPVLLRI----AFVVLALAGGGG----LLAYIVAWILIPEEGPGEEL 54          
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A6H1A185_9ACTN (PspC domain-containing protein n=1 Tax=Nocardioides sp. JQ2195 TaxID=2592334 RepID=A0A6H1A185_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 2.320e-7
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDGSGR 207
            RS  DR++AG+AGG GR L +DP  LR+    A ++L   GG G    L+ Y+A+W +VPD +G 
Sbjct:   53 RSSYDRHVAGVAGGLGRHLDIDPVILRV----AFVVLTFFGGAG----LIIYIASWLIVPDDAGN 109          
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A535M719_9CHLR (PspC domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535M719_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 2.330e-7
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    7 FTRSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDGSGRS 210
            FTRS  DR L G+AGG GRRLGVDP  +R    GA +LLA  GG G  +    Y+ AW +  D  G +
Sbjct:  127 FTRSADDRVLTGVAGGLGRRLGVDPLLVR----GAFVLLAVAGGSGVGI----YILAWLVSHDPEGAT 186          
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A7V1U8B9_9ACTN (PspC domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V1U8B9_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 4.640e-7
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPD 195
            RS  DR +AG+ GG GR LG+DP  LRI    A ++LA  GGGG ++    Y+ +W L+P+
Sbjct:   20 RSREDRVIAGVCGGLGRYLGIDPVLLRI----AFVVLALVGGGGVLL----YIVSWILIPE 72          
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A4V2Z496_9ACTN (PspC domain-containing protein n=1 Tax=Jiangella asiatica TaxID=2530372 RepID=A0A4V2Z496_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 5.930e-7
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVP-DGSGRSLL 216
            RS  DR +AG+ GG GRRLG+DP  LR+    AT++LA  GG G ++    Y  AW LVP +G   S+L
Sbjct:   26 RSRSDRVVAGVLGGLGRRLGIDPVVLRV----ATVVLAIFGGVGVLL----YAVAWLLVPAEGDDGSIL 86          
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A7Y5T6I4_9ACTN (PspC domain-containing protein (Fragment) n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A7Y5T6I4_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 5.970e-7
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPD-GSGR 207
            RS  DR +AG+AGG GR L +DP  LR+  V    +LA   G G V+    YLAAW LVP+ G+GR
Sbjct:   38 RSTTDRKIAGVAGGLGRHLNIDPTVLRVMFV----VLALFSGAGIVL----YLAAWLLVPEEGAGR 95          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C8FE252.680e-846.88PspC domain-containing protein n=1 Tax=Pseudonocar... [more]
A0A0Q7ZN17_9ACTN3.540e-848.48Uncharacterized protein n=3 Tax=unclassified Nocar... [more]
A0A3N0CQB5_9ACTN1.580e-743.55PspC domain-containing protein n=2 Tax=Marmoricola... [more]
A0A535UGJ2_9CHLR1.920e-748.53PspC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7C2HVJ7_9ACTN2.070e-750.82PspC domain-containing protein n=1 Tax=Actinomycet... [more]
A0A6H1A185_9ACTN2.320e-744.62PspC domain-containing protein n=1 Tax=Nocardioide... [more]
A0A535M719_9CHLR2.330e-748.53PspC domain-containing protein n=1 Tax=Chloroflexi... [more]
A0A7V1U8B9_9ACTN4.640e-745.90PspC domain-containing protein n=1 Tax=Actinomycet... [more]
A0A4V2Z496_9ACTN5.930e-747.83PspC domain-containing protein n=1 Tax=Jiangella a... [more]
A0A7Y5T6I4_9ACTN5.970e-750.00PspC domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80418contigM-pyrifera_M_contig80418:711..926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.8443792-CDS-M-pyrifera_M_contig80418:710..9261622816709.8443792-CDS-M-pyrifera_M_contig80418:710..926Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80418 711..926 +
1692278133.7189417-CDS-M-pyrifera_M_contig80418:710..9261692278133.7189417-CDS-M-pyrifera_M_contig80418:710..926Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80418 711..926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80418.18835.1prot_M-pyrifera_M_contig80418.18835.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80418 711..926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80418.18835.1

>prot_M-pyrifera_M_contig80418.18835.1 ID=prot_M-pyrifera_M_contig80418.18835.1|Name=mRNA_M-pyrifera_M_contig80418.18835.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
FPFTRSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFV
MPLVAYLAAWFLVPDGSGRSLL
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mRNA from alignment at M-pyrifera_M_contig80418:711..926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80418.18835.1 ID=mRNA_M-pyrifera_M_contig80418.18835.1|Name=mRNA_M-pyrifera_M_contig80418.18835.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig80418:711..926+ (Macrocystis pyrifera P11B4 male)
TTCCCCTTCACGCGAAGCGACGGCGATCGCTACCTGGCCGGCATCGCCGG CGGTGAGGGACGCCGCCTCGGTGTCGACCCCTTCTTCCTTCGCATCGGTC TGGTCGGGGCCACGCTCCTCCTGGCTCGTAACGGTGGTGGCGGGTTCGTC ATGCCGCTCGTCGCTTACCTCGCCGCCTGGTTCCTCGTGCCCGACGGATC GGGCCGGTCCCTGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80418:711..926+

>mRNA_M-pyrifera_M_contig80418.18835.1 ID=mRNA_M-pyrifera_M_contig80418.18835.1|Name=mRNA_M-pyrifera_M_contig80418.18835.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig80418:711..926+ (Macrocystis pyrifera P11B4 male)
TTCCCCTTCACGCGAAGCGACGGCGATCGCTACCTGGCCGGCATCGCCGG
CGGTGAGGGACGCCGCCTCGGTGTCGACCCCTTCTTCCTTCGCATCGGTC
TGGTCGGGGCCACGCTCCTCCTGGCTCGTAACGGTGGTGGCGGGTTCGTC
ATGCCGCTCGTCGCTTACCTCGCCGCCTGGTTCCTCGTGCCCGACGGATC
GGGCCGGTCCCTGTTGTTCCCCTTCACGCGAAGCGACGGCGATCGCTACC
TGGCCGGCATCGCCGGCGGTGAGGGACGCCGCCTCGGTGTCGACCCCTTC
TTCCTTCGCATCGGTCTGGTCGGGGCCACGCTCCTCCTGGCTCGTAACGG
TGGTGGCGGGTTCGTCATGCCGCTCGTCGCTTACCTCGCCGCCTGGTTCC
TCGTGCCCGACGGATCGGGCCGGTCCCTGTTG
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