mRNA_M-pyrifera_M_contig80418.18835.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: UPI0019C8FE25 (PspC domain-containing protein n=1 Tax=Pseudonocardia sp. TaxID=60912 RepID=UPI0019C8FE25) HSP 1 Score: 54.7 bits (130), Expect = 2.680e-8 Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 1 Query: 4 PFTRSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPD 195 P RS DR LAG+ GG GR L +DP LR+ LV T+ A G +V Y+AAW LVP+ Sbjct: 11 PLQRSRSDRMLAGVCGGAGRHLDIDPTLLRLALVLLTVFGAGIG-------VVLYVAAWILVPE 67
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A0Q7ZN17_9ACTN (Uncharacterized protein n=3 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q7ZN17_9ACTN) HSP 1 Score: 58.2 bits (139), Expect = 3.540e-8 Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1 Query: 13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDGSGRS 210 RS DR++AG+AGG GR L VDP LR+ A ++L GG G L+ Y+A W LVP+ +GRS Sbjct: 47 RSSYDRHVAGVAGGLGRHLDVDPVILRV----AFVVLTFFGGAG----LIIYVACWLLVPEDTGRS 104
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A3N0CQB5_9ACTN (PspC domain-containing protein n=2 Tax=Marmoricola ginsengisoli TaxID=661483 RepID=A0A3N0CQB5_9ACTN) HSP 1 Score: 52.4 bits (124), Expect = 1.580e-7 Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1 Query: 13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDG 198 RS+ D+ +AG+ GG GR LGVDP +R+G V A ++ GF +VAY AW ++P G Sbjct: 2 RSNDDKMVAGVCGGLGRYLGVDPTLVRVGAVVALVI-------GFPATIVAYAVAWAIMPQG 56
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A535UGJ2_9CHLR (PspC domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535UGJ2_9CHLR) HSP 1 Score: 55.8 bits (133), Expect = 1.920e-7 Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1 Query: 7 FTRSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDGSGRS 210 FTRS DR L G+AGG GRRLGVDP +R GA +LLA GG G + Y+ AW + D G + Sbjct: 127 FTRSADDRVLTGVAGGLGRRLGVDPLLVR----GAFVLLAVAGGSGVGI----YILAWLVSHDPEGAA 186
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A7C2HVJ7_9ACTN (PspC domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C2HVJ7_9ACTN) HSP 1 Score: 53.5 bits (127), Expect = 2.070e-7 Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1 Query: 34 LAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPD-GSGRSL 213 +AG+ GG GR LGVDP LRI A ++LA GGGG L+AY+ AW L+P+ G G L Sbjct: 2 IAGVCGGLGRYLGVDPVLLRI----AFVVLALAGGGG----LLAYIVAWILIPEEGPGEEL 54
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A6H1A185_9ACTN (PspC domain-containing protein n=1 Tax=Nocardioides sp. JQ2195 TaxID=2592334 RepID=A0A6H1A185_9ACTN) HSP 1 Score: 55.8 bits (133), Expect = 2.320e-7 Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1 Query: 13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDGSGR 207 RS DR++AG+AGG GR L +DP LR+ A ++L GG G L+ Y+A+W +VPD +G Sbjct: 53 RSSYDRHVAGVAGGLGRHLDIDPVILRV----AFVVLTFFGGAG----LIIYIASWLIVPDDAGN 109
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A535M719_9CHLR (PspC domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535M719_9CHLR) HSP 1 Score: 55.8 bits (133), Expect = 2.330e-7 Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1 Query: 7 FTRSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPDGSGRS 210 FTRS DR L G+AGG GRRLGVDP +R GA +LLA GG G + Y+ AW + D G + Sbjct: 127 FTRSADDRVLTGVAGGLGRRLGVDPLLVR----GAFVLLAVAGGSGVGI----YILAWLVSHDPEGAT 186
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A7V1U8B9_9ACTN (PspC domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V1U8B9_9ACTN) HSP 1 Score: 53.1 bits (126), Expect = 4.640e-7 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 Query: 13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPD 195 RS DR +AG+ GG GR LG+DP LRI A ++LA GGGG ++ Y+ +W L+P+ Sbjct: 20 RSREDRVIAGVCGGLGRYLGIDPVLLRI----AFVVLALVGGGGVLL----YIVSWILIPE 72
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A4V2Z496_9ACTN (PspC domain-containing protein n=1 Tax=Jiangella asiatica TaxID=2530372 RepID=A0A4V2Z496_9ACTN) HSP 1 Score: 54.7 bits (130), Expect = 5.930e-7 Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1 Query: 13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVP-DGSGRSLL 216 RS DR +AG+ GG GRRLG+DP LR+ AT++LA GG G ++ Y AW LVP +G S+L Sbjct: 26 RSRSDRVVAGVLGGLGRRLGIDPVVLRV----ATVVLAIFGGVGVLL----YAVAWLLVPAEGDDGSIL 86
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Match: A0A7Y5T6I4_9ACTN (PspC domain-containing protein (Fragment) n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A7Y5T6I4_9ACTN) HSP 1 Score: 53.5 bits (127), Expect = 5.970e-7 Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1 Query: 13 RSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVMPLVAYLAAWFLVPD-GSGR 207 RS DR +AG+AGG GR L +DP LR+ V +LA G G V+ YLAAW LVP+ G+GR Sbjct: 38 RSTTDRKIAGVAGGLGRHLNIDPTVLRVMFV----VLALFSGAGIVL----YLAAWLLVPEEGAGR 95 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80418.18835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig80418.18835.1 >prot_M-pyrifera_M_contig80418.18835.1 ID=prot_M-pyrifera_M_contig80418.18835.1|Name=mRNA_M-pyrifera_M_contig80418.18835.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp FPFTRSDGDRYLAGIAGGEGRRLGVDPFFLRIGLVGATLLLARNGGGGFVback to top mRNA from alignment at M-pyrifera_M_contig80418:711..926+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig80418.18835.1 ID=mRNA_M-pyrifera_M_contig80418.18835.1|Name=mRNA_M-pyrifera_M_contig80418.18835.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig80418:711..926+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig80418:711..926+ >mRNA_M-pyrifera_M_contig80418.18835.1 ID=mRNA_M-pyrifera_M_contig80418.18835.1|Name=mRNA_M-pyrifera_M_contig80418.18835.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig80418:711..926+ (Macrocystis pyrifera P11B4 male)back to top |