mRNA_M-pyrifera_M_contig80280.18808.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80280.18808.1
Unique NamemRNA_M-pyrifera_M_contig80280.18808.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: A0A7S0ZFM6_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFM6_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 1.840e-29
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   34 GVSMQAKFDATER-TVQGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRKQTN--TQFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFLV 372
            GV+M+  FD  E   +Q  SGGQKSL+ALALI AIQR DPAPFY  DE DA LD T+RAA+A +I+ Q +  TQF+ TTF  E   AGD +FGV  + + S + + TKEQA+ F++
Sbjct:    2 GVAMKVSFDGNETYLIQQLSGGQKSLVALALIFAIQRLDPAPFYFFDEIDANLDATHRAAVAGLIQSQASKGTQFVTTTFRPEFVNAGDVWFGVSHRNKISSVDQVTKEQALEFIL 117          
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: A0A8H7SQ93_9FUNG (SMC hinge domain-containing protein (Fragment) n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SQ93_9FUNG)

HSP 1 Score: 115 bits (287), Expect = 3.910e-27
Identity = 63/122 (51.64%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   16 SLATFQGVSMQAKFDATE---RTVQGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRKQTNT-QFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFL 369
            S+  + G+S+Q  F++      T+Q  SGGQKSL+ALALI AIQRCDPAPFYL DE DA LD  YR A+A+MI K + + QFI TTF  E     D F+GV  Q + S++   TKE A+GF+
Sbjct: 1066 SVDRYSGISIQVSFNSKSDEGMTMQQLSGGQKSLVALALIFAIQRCDPAPFYLFDEIDANLDAQYRTAVAEMIHKLSESAQFITTTFRSELLANADKFYGVTFQGKVSRIHAITKENALGFI 1187          
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: A0A183E3X7_9BILA (SMC_N domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183E3X7_9BILA)

HSP 1 Score: 107 bits (266), Expect = 6.140e-27
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 KSKLPSLATFQGVSMQAKFDATERTV--QGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRKQT-NTQFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFL 369
            ++ LP + TF GV+++  F   +  +  Q  SGGQKSL+ALALI AIQ+CDPAPFYL DE DAALD  +R A+A MI + + N QFI TTF  E  +  + +FGV  + + S +   +K+QA  F+
Sbjct:   24 QADLPRVETFTGVAIRVSFTGEDDNLEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQHRKAVADMIHELSQNAQFITTTFRPELLDNAEKYFGVLFRNKVSHINAVSKQQAFDFV 149          
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: UPI00106C7B2D (structural maintenance of chromosomes protein 3-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C7B2D)

HSP 1 Score: 114 bits (285), Expect = 7.280e-27
Identity = 69/126 (54.76%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    4 SKLPSLATFQGVSMQAKF---DATERTVQGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRKQTN-TQFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFL 369
            SKLPS   F GVS++  F    A  R +   SGGQKSL+ALALI AIQRCDPAPFYL DE D ALD  YR ++A+MIRKQ    QFI TTF  E  EA D F+GV  + + S +   TKE+A  F+
Sbjct: 1087 SKLPS-DKFSGVSIKVSFTGKSAETREMNQLSGGQKSLVALALIFAIQRCDPAPFYLFDEIDQALDPQYRTSVAEMIRKQAEKAQFITTTFRAELLEASDKFYGVRFRNKVSHIDAITKEKAKEFV 1211          
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: A0A8H7RLH5_9FUNG (Structural maintenance of chromosomes protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RLH5_9FUNG)

HSP 1 Score: 114 bits (284), Expect = 9.910e-27
Identity = 63/128 (49.22%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   16 SLATFQGVSMQAKFDATE---RTVQGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRKQT-NTQFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFLVAYEGK 387
            S+  + G+S+Q  F++       +Q  SGGQKSL+ALALI AIQRCDPAPFYL DE DA LD  YR A+A MI K + N QFI TTF  E     + F+GV  Q + S++   TKE A+GF+     K
Sbjct: 1060 SIDRYSGISIQVSFNSKSDEGMIMQQLSGGQKSLVALALIFAIQRCDPAPFYLFDEIDANLDAQYRTAVADMIHKMSENAQFITTTFRSELLTNANKFYGVTFQGKVSRIHATTKENALGFVEMVSNK 1187          
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: A0A2G8LGK2_STIJA (Putative structural maintenance of chromosomes protein 3 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LGK2_STIJA)

HSP 1 Score: 107 bits (267), Expect = 1.180e-26
Identity = 63/126 (50.00%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    4 SKLPSLATFQGVSMQAKFDATE---RTVQGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRKQT-NTQFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFL 369
            S++P +  F GV ++  F       R +Q  SGGQKSL+AL LI AIQ+CDPAPFYL DE D+ALD  +R A+A MI + + N QFI TTF  E  EA D F+GV  + + S +   TKEQA  FL
Sbjct:   62 SQIPLVEQFTGVGIKVSFTGKSGETREMQQLSGGQKSLVALTLIFAIQKCDPAPFYLFDEIDSALDAQHRKAVADMIHELSDNAQFITTTFRPELLEACDKFYGVKFRNKVSHIDVITKEQAKDFL 187          
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: A0A3P8H9P8_9TREM (SMC_N domain-containing protein n=2 Tax=Echinostoma caproni TaxID=27848 RepID=A0A3P8H9P8_9TREM)

HSP 1 Score: 106 bits (264), Expect = 1.230e-26
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    4 SKLPSLATFQGVSMQAKF---DATERTVQGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRK-QTNTQFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFL 369
            S +P +  F GV ++  F    A  R +   SGGQKSL+AL LI AIQ+CDPAPFYL DE DAALD  YR A+A MIR  ++  QFI TTF  E  E+ + F+GV  + + S +   TK +A+ F+
Sbjct:   24 SAIPDVERFTGVGIRVSFTGDSADMRDMNQLSGGQKSLVALTLIFAIQKCDPAPFYLFDEIDAALDAQYRKAVADMIRDLKSEAQFITTTFRPELLESAEKFYGVKFRNKVSHIECVTKGEALDFV 149          
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: A0A3S5CC76_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5CC76_9PLAT)

HSP 1 Score: 105 bits (263), Expect = 1.650e-26
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    4 SKLPSLATFQGVSMQAKF---DATERTVQGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRK-QTNTQFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFL 369
            S +P +  F GV ++  F    A  R +   SGGQKSL+AL LI AIQ+CDPAPFYL DE DAALD  YR A+A MIR  ++  QFI TTF  E  E+ + ++GV  + + S +   TK +A+ F+
Sbjct:   22 SAIPDIERFTGVGIRVSFTGDSADMRDMNQLSGGQKSLVALTLIFAIQKCDPAPFYLFDEIDAALDAQYRKAVADMIRDLKSEAQFITTTFRPELLESSEKYYGVKFRNKVSHIECVTKAEALDFV 147          
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: A0A1C7NBX1_9FUNG (Structural maintenance of chromosomes protein n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NBX1_9FUNG)

HSP 1 Score: 113 bits (282), Expect = 1.840e-26
Identity = 63/122 (51.64%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   16 SLATFQGVSMQAKFDATE---RTVQGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRKQTN-TQFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFL 369
            S+  + GVS+Q  F++       +Q  SGGQKSL+ALALI AIQRCDPAPFYL DE DA LD  YRAA+A MI + ++  QFI TTF  E     D F+GV  Q + S++   TKE A+GF+
Sbjct: 1044 SVDRYSGVSIQVSFNSKSDEGMIMQQLSGGQKSLVALALIFAIQRCDPAPFYLFDEIDANLDAQYRAAVADMIHRMSDKAQFITTTFRPELLSNADKFYGVTFQGKVSRIHAITKENALGFV 1165          
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Match: A0A7S0NT65_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NT65_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 2.440e-26
Identity = 59/135 (43.70%), Postives = 80/135 (59.26%), Query Frame = 1
Query:   22 ATFQGVSMQAKF--DATERTVQGFSGGQKSLLALALILAIQRCDPAPFYLLDEADAALDTTYRAALAKMIRKQTN-----------TQFILTTFHRETAEAGDAFFGVYAQARESKMRRQTKEQAIGFLVAYEGK 387
            AT+ G+S++ +F   A   T+   SGGQK+++AL LI AIQRCDPAPFY+ DE DA LD  +RA+LAKMI +Q             TQFI TTF  E    GD F+GV  + + S +R   K +A+  +   E +
Sbjct:    1 ATYSGISIKVQFVGGADTYTMAQLSGGQKTMVALCLIFAIQRCDPAPFYIFDEIDANLDAAHRASLAKMIERQAAETDVSGEDRPPTQFITTTFRPELIHTGDKFYGVTHRNKASSIRAVEKSEALRIITESESR 135          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80280.18808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0ZFM6_9RHOD1.840e-2953.45Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A8H7SQ93_9FUNG3.910e-2751.64SMC hinge domain-containing protein (Fragment) n=1... [more]
A0A183E3X7_9BILA6.140e-2746.83SMC_N domain-containing protein n=1 Tax=Gongylonem... [more]
UPI00106C7B2D7.280e-2754.76structural maintenance of chromosomes protein 3-li... [more]
A0A8H7RLH5_9FUNG9.910e-2749.22Structural maintenance of chromosomes protein n=1 ... [more]
A0A2G8LGK2_STIJA1.180e-2650.00Putative structural maintenance of chromosomes pro... [more]
A0A3P8H9P8_9TREM1.230e-2647.62SMC_N domain-containing protein n=2 Tax=Echinostom... [more]
A0A3S5CC76_9PLAT1.650e-2646.83Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
A0A1C7NBX1_9FUNG1.840e-2651.64Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S0NT65_9EUKA2.440e-2643.70Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80280contigM-pyrifera_M_contig80280:539..937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score114.8
Seed ortholog evalue3.1e-23
Seed eggNOG ortholog42068.L0PC93
Preferred nameSMC3
KEGG koko:K06669
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008278,GO:0009653,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030892,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034293,GO:0034502,GO:0034613,GO:0034641,GO:0034990,GO:0035825,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043934,GO:0043935,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045144,GO:0046483,GO:0048285,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051641,GO:0051704,GO:0051716,GO:0061775,GO:0061780,GO:0061982,GO:0061983,GO:0062022,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070193,GO:0070601,GO:0070727,GO:0071168,GO:0071704,GO:0071840,GO:0071921,GO:0071960,GO:0071962,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990414
EggNOG free text desc.Structural maintenance of chromosomes protein
EggNOG OGs38BNB@33154,3MBQ4@451866,3NWDY@4751,3QPAP@4890,COG1196@1,KOG0964@2759
COG Functional cat.B
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00535,ko03036
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.068561-CDS-M-pyrifera_M_contig80280:538..9371622816708.068561-CDS-M-pyrifera_M_contig80280:538..937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80280 539..937 -
1692278132.4856558-CDS-M-pyrifera_M_contig80280:538..9371692278132.4856558-CDS-M-pyrifera_M_contig80280:538..937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80280 539..937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80280.18808.1prot_M-pyrifera_M_contig80280.18808.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80280 539..937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80280.18808.1

>prot_M-pyrifera_M_contig80280.18808.1 ID=prot_M-pyrifera_M_contig80280.18808.1|Name=mRNA_M-pyrifera_M_contig80280.18808.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
KSKLPSLATFQGVSMQAKFDATERTVQGFSGGQKSLLALALILAIQRCDP
APFYLLDEADAALDTTYRAALAKMIRKQTNTQFILTTFHRETAEAGDAFF
GVYAQARESKMRRQTKEQAIGFLVAYEGKKKA*
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mRNA from alignment at M-pyrifera_M_contig80280:539..937-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80280.18808.1 ID=mRNA_M-pyrifera_M_contig80280.18808.1|Name=mRNA_M-pyrifera_M_contig80280.18808.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig80280:539..937- (Macrocystis pyrifera P11B4 male)
AAGAGCAAACTGCCTTCCTTGGCAACCTTCCAGGGTGTGTCGATGCAGGC GAAGTTTGACGCCACTGAACGCACAGTGCAAGGGTTTTCTGGGGGACAAA AGTCTCTCTTGGCGCTTGCATTGATCCTTGCGATCCAACGATGCGATCCT GCTCCTTTCTACTTGCTGGATGAGGCAGATGCAGCTCTTGATACCACGTA TCGCGCTGCATTGGCCAAGATGATCCGAAAACAAACCAACACGCAATTCA TCCTCACCACGTTCCACCGAGAAACCGCAGAAGCCGGAGATGCCTTCTTC GGAGTGTACGCACAAGCCAGAGAAAGCAAGATGCGGCGCCAAACCAAGGA ACAAGCCATAGGATTCCTTGTCGCCTACGAAGGAAAGAAAAAAGCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80280:539..937-

>mRNA_M-pyrifera_M_contig80280.18808.1 ID=mRNA_M-pyrifera_M_contig80280.18808.1|Name=mRNA_M-pyrifera_M_contig80280.18808.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig80280:539..937- (Macrocystis pyrifera P11B4 male)
AAGAGCAAACTGCCTTCCTTGGCAACCTTCCAGGGTGTGTCGATGCAGGC
GAAGTTTGACGCCACTGAACGCACAGTGCAAGGGTTTTCTGGGGGACAAA
AGTCTCTCTTGGCGCTTGCATTGATCCTTGCGATCCAACGATGCGATCCT
GCTCCTTTCTACTTGCTGGATGAGGCAGATGCAGCTCTTGATACCACGTA
TCGCGCTGCATTGGCCAAGATGATCCGAAAACAAACCAACACGCAATTCA
TCCTCACCACGTTCCACCGAGAAACCGCAGAAGCCGGAGATGCCTTCTTC
GGAGTGTACGCACAAGCCAGAGAAAGCAAGATGCGGCGCCAAACCAAGGA
ACAAGCCATAGGATTCCTTGTCGCCTACGAAGGAAAGAAAAAAGCATAAA
AGAGCAAACTGCCTTCCTTGGCAACCTTCCAGGGTGTGTCGATGCAGGCG
AAGTTTGACGCCACTGAACGCACAGTGCAAGGGTTTTCTGGGGGACAAAA
GTCTCTCTTGGCGCTTGCATTGATCCTTGCGATCCAACGATGCGATCCTG
CTCCTTTCTACTTGCTGGATGAGGCAGATGCAGCTCTTGATACCACGTAT
CGCGCTGCATTGGCCAAGATGATCCGAAAACAAACCAACACGCAATTCAT
CCTCACCACGTTCCACCGAGAAACCGCAGAAGCCGGAGATGCCTTCTTCG
GAGTGTACGCACAAGCCAGAGAAAGCAAGATGCGGCGCCAAACCAAGGAA
CAAGCCATAGGATTCCTTGTCGCCTACGAAGGAAAGAAAAAAGCATAA
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