mRNA_M-pyrifera_M_contig79821.18728.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79821.18728.1
Unique NamemRNA_M-pyrifera_M_contig79821.18728.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79821.18728.1 vs. uniprot
Match: UPI000C78E68F (zinc finger X-chromosomal protein-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78E68F)

HSP 1 Score: 69.3 bits (168), Expect = 1.370e-11
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:    1 RCGECGGLFGRKGDLLVHLRNVHLNHRPHACMECDYKAKTGWNLRSHFVRKH-GRKVSVGCNFCGRQVSVLSWRQHLGECHR 243
            +C  C   F  K  L  H+R VH   +  +C  C+Y++   +NLR H  R H GRKVS+ C FC + V  L W  HL + H+
Sbjct:  392 QCDHCEKSFSLKDGLNRHIRAVHFKLKDKSCQHCNYRSAESFNLRMHIARVHEGRKVSLPCPFCNKNVVSLQW--HLEQYHK 471
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BLAST of mRNA_M-pyrifera_M_contig79821.18728.1 vs. uniprot
Match: UPI001F4F1D69 (protein bric-a-brac 1-like isoform X1 n=5 Tax=Schistocerca TaxID=7008 RepID=UPI001F4F1D69)

HSP 1 Score: 55.8 bits (133), Expect = 7.130e-7
Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    4 CGECGGLFGRKGDLLVHLRNVHLNHRPHACMECDYKAKTGWNLRSHFVRKHGRKVS 171
            C  C   FG +G+L +H+R+VH +  PH C  C  K K   +LR+H  R+H + ++
Sbjct:  326 CPYCHRQFGYRGNLTIHIRDVHSHQGPHICPHCGKKMKNKSSLRTHLYRQHNKDLT 381
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79821.18728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000C78E68F1.370e-1139.02zinc finger X-chromosomal protein-like n=1 Tax=Eur... [more]
UPI001F4F1D697.130e-737.50protein bric-a-brac 1-like isoform X1 n=5 Tax=Schi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79821contigM-pyrifera_M_contig79821:6..314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.8
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog7668.SPU_022487-tr
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nucleic acid binding
EggNOG OGs38BZ9@33154,3BA9A@33208,3CT35@33213,KOG1721@1,KOG1721@2759
COG Functional cat.C
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.0686154-CDS-M-pyrifera_M_contig79821:5..3141622816702.0686154-CDS-M-pyrifera_M_contig79821:5..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79821 6..314 +
1692278128.5905912-CDS-M-pyrifera_M_contig79821:5..3141692278128.5905912-CDS-M-pyrifera_M_contig79821:5..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79821 6..314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79821.18728.1prot_M-pyrifera_M_contig79821.18728.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79821 6..314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79821.18728.1

>prot_M-pyrifera_M_contig79821.18728.1 ID=prot_M-pyrifera_M_contig79821.18728.1|Name=mRNA_M-pyrifera_M_contig79821.18728.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
RCGECGGLFGRKGDLLVHLRNVHLNHRPHACMECDYKAKTGWNLRSHFVR
KHGRKVSVGCNFCGRQVSVLSWRQHLGECHRSVPLCCGVCGKSFKSSNGL
QRH
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mRNA from alignment at M-pyrifera_M_contig79821:6..314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79821.18728.1 ID=mRNA_M-pyrifera_M_contig79821.18728.1|Name=mRNA_M-pyrifera_M_contig79821.18728.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig79821:6..314+ (Macrocystis pyrifera P11B4 male)
CGTTGTGGAGAATGTGGTGGATTGTTTGGTCGGAAGGGCGATCTTCTGGT
TCATCTTCGCAACGTGCATTTGAATCATCGTCCGCATGCATGTATGGAAT
GTGACTACAAGGCGAAAACAGGTTGGAATCTGCGGAGTCATTTTGTTCGC
AAACATGGTCGCAAGGTTTCCGTGGGTTGCAATTTTTGTGGTCGTCAGGT
GTCTGTGTTGTCTTGGCGTCAGCACCTTGGTGAGTGTCATCGCTCAGTGC
CATTGTGTTGTGGTGTGTGTGGGAAGTCATTCAAGTCCTCTAATGGTCTT
CAACGTCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79821:6..314+

>mRNA_M-pyrifera_M_contig79821.18728.1 ID=mRNA_M-pyrifera_M_contig79821.18728.1|Name=mRNA_M-pyrifera_M_contig79821.18728.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig79821:6..314+ (Macrocystis pyrifera P11B4 male)
CGTTGTGGAGAATGTGGTGGATTGTTTGGTCGGAAGGGCGATCTTCTGGT
TCATCTTCGCAACGTGCATTTGAATCATCGTCCGCATGCATGTATGGAAT
GTGACTACAAGGCGAAAACAGGTTGGAATCTGCGGAGTCATTTTGTTCGC
AAACATGGTCGCAAGGTTTCCGTGGGTTGCAATTTTTGTGGTCGTCAGGT
GTCTGTGTTGTCTTGGCGTCAGCACCTTGGTGAGTGTCATCGCTCAGTGC
CATTGTGTTGTGGTGTGTGTGGGAAGTCATTCAAGTCCTCTAATGGTCTT
CAACGTCACCGTTGTGGAGAATGTGGTGGATTGTTTGGTCGGAAGGGCGA
TCTTCTGGTTCATCTTCGCAACGTGCATTTGAATCATCGTCCGCATGCAT
GTATGGAATGTGACTACAAGGCGAAAACAGGTTGGAATCTGCGGAGTCAT
TTTGTTCGCAAACATGGTCGCAAGGTTTCCGTGGGTTGCAATTTTTGTGG
TCGTCAGGTGTCTGTGTTGTCTTGGCGTCAGCACCTTGGTGAGTGTCATC
GCTCAGTGCCATTGTGTTGTGGTGTGTGTGGGAAGTCATTCAAGTCCTCT
AATGGTCTTCAACGTCAC
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