mRNA_M-pyrifera_M_contig7982.18725.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7982.18725.1
Unique NamemRNA_M-pyrifera_M_contig7982.18725.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7982.18725.1 vs. uniprot
Match: D7FYS9_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS9_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.470e-42
Identity = 76/93 (81.72%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 MATPVGAGPIIQDGAPKGGFPKIQISRQLPSTRGPRGAVVLGLVTVTMAVGYYKLGQANKGRRALRHEKRLARIALMPMLQVSS-RQCSLAVR 276
            MATPVG GPI+QD APKGGFPK+QISRQLPS RGPRG+VVLGLVTVTMAVGYYKLGQANK RRA +HEKRLARIALMPMLQ    R+  LA R
Sbjct:    1 MATPVGTGPIVQDVAPKGGFPKVQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKR 93
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BLAST of mRNA_M-pyrifera_M_contig7982.18725.1 vs. uniprot
Match: I0YQ01_COCSC (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YQ01_COCSC)

HSP 1 Score: 71.2 bits (173), Expect = 9.930e-14
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   25 PIIQDGAPKGGFPKIQISRQLPSTRGPRGAVVLGLVTVTMAVGYYKLGQANKGRRALRHEKRLARIALMPMLQ 243
            P++QDG P GGFP I+ +R++PST GP G  +  +    MA G+Y++G+ N+ RRAL+ EK   R A+ P+LQ
Sbjct:   19 PVLQDGPPPGGFPSIRYARRIPST-GPTGFTLFAVGAAVMAFGFYRVGEFNRYRRALKAEKMTMRTAIYPVLQ 90
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BLAST of mRNA_M-pyrifera_M_contig7982.18725.1 vs. uniprot
Match: A0A7J7IHL6_9RHOD (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHL6_9RHOD)

HSP 1 Score: 58.5 bits (140), Expect = 8.690e-9
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:   31 IQDGAPKGGFPKIQISRQLPSTRGPRGAVVLGLVTVTMAVGYYKLGQANKGRRALRHEKRLARIALMPMLQVSSRQCSLAVR 276
            +QDG P GG+P++ + R LP   GP    +     V MA G++++G  N  RR L  E++  R AL+P LQ    Q  L  R
Sbjct:   25 VQDGPPAGGYPRLDVRRNLPRNVGPSATFLFLGGAVVMAYGFWRVGTFNVHRRELLEERQQVRAALVPFLQAEEDQRYLEAR 106
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BLAST of mRNA_M-pyrifera_M_contig7982.18725.1 vs. uniprot
Match: M1UR10_CYAM1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=cellular organisms TaxID=131567 RepID=M1UR10_CYAM1)

HSP 1 Score: 57.8 bits (138), Expect = 1.760e-8
Identity = 28/71 (39.44%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:   31 IQDGAPKGGFPKIQISRQLPSTRGPRGAVVLGLVTVTMAVGYYKLGQANKGRRALRHEKRLARIALMPMLQ 243
            +QDG P GG+P++ + R LP   GP    +     + MA G++++G  N  RR L  E+R  R AL P LQ
Sbjct:   25 LQDGPPPGGYPRLDVRRNLPRNVGPSATALFLGSALVMAYGFWRMGNYNLHRRELLEERRQVRAALAPFLQ 95
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BLAST of mRNA_M-pyrifera_M_contig7982.18725.1 vs. uniprot
Match: F0YB35_AURAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB35_AURAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-7
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   28 IIQDGAPKGGFPKIQISRQLPSTRGPRGAVVLGLVTVTMAVGYYKLGQANKGRRALRHEKRLARIALMPMLQ 243
            ++QD  P GG+P + I ++    RGP G ++     +T+A G+Y++GQ N  R A + EKR AR+A++P LQ
Sbjct:   18 VVQDMPPAGGYPDV-IFKKATINRGPDGWMIWVGSLLTVAFGFYRVGQCNLERNAAKKEKREARMAIVPYLQ 88
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BLAST of mRNA_M-pyrifera_M_contig7982.18725.1 vs. uniprot
Match: M2XA08_GALSU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XA08_GALSU)

HSP 1 Score: 52.8 bits (125), Expect = 1.630e-6
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   31 IQDGAPKGGFPKIQISRQLPSTRGPRGAVVL---GLVTVTMAVGYYKLGQANKGRRALRHEKRLARIALMPMLQ 243
            IQDG P GG+P I + R LP   GP G+ +L   GL+T+    G++ L ++ + RR L  EK   R+A+ P LQ
Sbjct:   24 IQDGPPPGGYPPIDVRRNLPKV-GPSGSTLLIGVGLITI---YGFWGLSRSAQRRRRLNQEKYQVRLAITPFLQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7982.18725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FYS9_ECTSI1.470e-4281.72NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
I0YQ01_COCSC9.930e-1446.58NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7J7IHL6_9RHOD8.690e-937.80NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
M1UR10_CYAM11.760e-839.44NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
F0YB35_AURAN1.270e-740.28NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
M2XA08_GALSU1.630e-641.89NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7982contigM-pyrifera_M_contig7982:745..1290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.4e-32
Seed eggNOG ortholog2880.D7FYS9
Preferred nameNDUFA13
KEGG koko:K11353,ko:K14009
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04141,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05165,map00190,map01100,map04141,map04714,map04723,map04932,map05010,map05012,map05016,map05165
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0001101,GO:0001558,GO:0003006,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006355,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008104,GO:0008137,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010257,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017038,GO:0017076,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023057,GO:0030162,GO:0030308,GO:0030554,GO:0030964,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032526,GO:0032553,GO:0032555,GO:0032559,GO:0032981,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0033993,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0035456,GO:0035458,GO:0035639,GO:0036094,GO:0040008,GO:0042176,GO:0042221,GO:0042773,GO:0042775,GO:0042886,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045271,GO:0045333,GO:0045732,GO:0045862,GO:0045892,GO:0045926,GO:0045934,GO:0046034,GO:0046483,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0050136,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055085,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061024,GO:0061458,GO:0065002,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070585,GO:0070727,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072521,GO:0072593,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0090151,GO:0097159,GO:0097190,GO:0097191,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1990204,GO:1990542,GO:2000112,GO:2000113,GO:2000116,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.cellular response to interferon-beta
EggNOG OGsKOG3300@1,KOG3300@2759
Ec32 ortholog descriptionGRIM-19
Ec32 orthologEc-19_002380.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons2
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.8077269-CDS-M-pyrifera_M_contig7982:744..9541622816701.8077269-CDS-M-pyrifera_M_contig7982:744..954Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 745..954 -
1692278128.403073-CDS-M-pyrifera_M_contig7982:744..9541692278128.403073-CDS-M-pyrifera_M_contig7982:744..954Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 745..954 -
1622816701.8255944-CDS-M-pyrifera_M_contig7982:1224..12901622816701.8255944-CDS-M-pyrifera_M_contig7982:1224..1290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 1225..1290 -
1692278128.4177392-CDS-M-pyrifera_M_contig7982:1224..12901692278128.4177392-CDS-M-pyrifera_M_contig7982:1224..1290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7982 1225..1290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7982.18725.1prot_M-pyrifera_M_contig7982.18725.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7982 745..1290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7982.18725.1

>prot_M-pyrifera_M_contig7982.18725.1 ID=prot_M-pyrifera_M_contig7982.18725.1|Name=mRNA_M-pyrifera_M_contig7982.18725.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MATPVGAGPIIQDGAPKGGFPKIQISRQLPSTRGPRGAVVLGLVTVTMAV
GYYKLGQANKGRRALRHEKRLARIALMPMLQVSSRQCSLAVR
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mRNA from alignment at M-pyrifera_M_contig7982:745..1290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7982.18725.1 ID=mRNA_M-pyrifera_M_contig7982.18725.1|Name=mRNA_M-pyrifera_M_contig7982.18725.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig7982:745..1290- (Macrocystis pyrifera P11B4 male)
ATGGCAACACCTGTGGGCGCCGGCCCGATCATTCAGGATGGTGCCCCCAA
GGGTGGATTCCCTAAGGTACGCTAGGCATCTTGGTTTTGTGCTGGCCTAT
GGTCGTCGAGTATTCACCTGTGATCAAACTTAAATGTGATTCGTACGCGA
ATTATACCACGAAAGCACACCTTGCTGCTGTGTACCAAGTGCTCGTGTCT
CGGCACCGCGCGCATCGATCGCCCCTCCCTCACTGGCCGCATGCTTGTGC
AGCAACCATCTGTTATTGTGGAATACTCAGAGAAGAATGCATCCCAGTAA
TACCTTTCGTGACTCGTGTCCCTTCGATGGCTGTAGATCCAAATATCACG
TCAACTACCTTCGACCCGAGGACCTCGCGGAGCAGTAGTGCTCGGTCTGG
TGACGGTGACGATGGCTGTCGGATACTACAAGCTCGGACAAGCCAACAAG
GGGCGGAGAGCATTGAGGCACGAAAAGCGTCTGGCTCGAATCGCTTTGAT
GCCCATGCTTCAGGTGAGCAGTAGGCAGTGCTCCCTGGCAGTTCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7982:745..1290-

>mRNA_M-pyrifera_M_contig7982.18725.1 ID=mRNA_M-pyrifera_M_contig7982.18725.1|Name=mRNA_M-pyrifera_M_contig7982.18725.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig7982:745..1290- (Macrocystis pyrifera P11B4 male)
ATGGCAACACCTGTGGGCGCCGGCCCGATCATTCAGGATGGTGCCCCCAA
GGGTGGATTCCCTAAGATGGCAACACCTGTGGGCGCCGGCCCGATCATTC
AGGATGGTGCCCCCAAGGGTGGATTCCCTAAGATCCAAATATCACGTCAA
CTACCTTCGACCCGAGGACCTCGCGGAGCAGTAGTGCTCGGTCTGGTGAC
GGTGACGATGGCTGTCGGATACTACAAGCTCGGACAAGCCAACAAGGGGC
GGAGAGCATTGAGGCACGAAAAGCGTCTGGCTCGAATCGCTTTGATGCCC
ATGCTTCAGGTGAGCAGTAGGCAGTGCTCCCTGGCAGTTCGCATCCAAAT
ATCACGTCAACTACCTTCGACCCGAGGACCTCGCGGAGCAGTAGTGCTCG
GTCTGGTGACGGTGACGATGGCTGTCGGATACTACAAGCTCGGACAAGCC
AACAAGGGGCGGAGAGCATTGAGGCACGAAAAGCGTCTGGCTCGAATCGC
TTTGATGCCCATGCTTCAGGTGAGCAGTAGGCAGTGCTCCCTGGCAGTTC
GC
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