prot_M-pyrifera_M_contig79655.18695.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig79655.18695.1
Unique Nameprot_M-pyrifera_M_contig79655.18695.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length268
Homology
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A5A8DDD1_CAFRO (DNA-directed RNA polymerase subunit beta n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDD1_CAFRO)

HSP 1 Score: 270 bits (690), Expect = 2.890e-79
Identity = 132/269 (49.07%), Postives = 180/269 (66.91%), Query Frame = 0
Query:    2 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNRYEVGFGEVALSYPTHDEAD-GEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQE-WFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 268
            +I AYF EKGLVRQQLDSFN F++N + D+V  T ++++ P+RT+ P   +  NRYEV F +V +  P + EAD     ++ P EAR R LTY S +F  V W  ++N T E      E +  W GNIP+MV+  +C LR  S++  TELGECKFD+GGYF+VNGSEKV+IA ERQA+NRVYCF  ++P K SW  E+RSQTE+ ++P+    + M R+ +R DV  G+ IR RL  + Q IPVV +F A+G+ + R+ L +IVYD  D
Sbjct:   48 VIKAYFDEKGLVRQQLDSFNRFISNSVVDMVTNTPKMSLRPKRTYLPSVTVFPNRYEVWFADVQIGRPVNMEADESTSREIFPAEARHRNLTYQSSMFTHVVWRGYNNATDEPVTPAPEQERCWIGNIPIMVQSHFCRLRGLSDRAKTELGECKFDQGGYFVVNGSEKVIIAQERQAYNRVYCFEMRQPSKLSWRAEIRSQTENSSRPLSALNVVMYRKSERGDVQTGNNIRVRLQSIRQDIPVVTVFMAMGYVNARNTLSHIVYDPED 316          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A482SAA6_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAA6_9ARCH)

HSP 1 Score: 243 bits (619), Expect = 8.280e-76
Identity = 123/275 (44.73%), Postives = 178/275 (64.73%), Query Frame = 0
Query:    2 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAF----DNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 268
            +ID YF EKGLVRQQ+DSF+EF+TN I D++D    + I P+R +    ++  + + + FG++ ++ P   EADGE  +L PQEARLR LTY SQ+FV V    F    D +   R      S+ +     GNIP+M++ +YC L    ++ +T++GEC FD+GGYF++NGSEKV+IA ER + N VY F  ++PHK+ W TE+RS  +   +P    +LQM + G +  + +GHQI   LP + + +P+VV+FRALGF SD+ VL +IVYD SD
Sbjct:   35 VIDRYFEEKGLVRQQIDSFDEFITNTIQDLIDDAGEIFIKPERQYLSMNDIEQHGHRIKFGQIYVTQPVIYEADGEQRELYPQEARLRNLTYQSQIFVDVKVEEFKLDEDGKVDWRNDLPINSKRFDMIKLGNIPIMLRSRYCILNSRMDRDLTKVGECVFDQGGYFVINGSEKVMIAQERLSNNHVYVFKKQQPHKYEWVTEIRSHVDTGARPTSTCQLQMSKMGGKLAI-DGHQISCSLPYIREPVPIVVVFRALGFISDKDVLQHIVYDFSD 308          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A3R7CZ86_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7CZ86_9STRA)

HSP 1 Score: 241 bits (615), Expect = 3.520e-75
Identity = 127/278 (45.68%), Postives = 177/278 (63.67%), Query Frame = 0
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNR-----YEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDN-----ETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 268
            A+I AYF EKGLVRQQLDSF+EF+ N + +++D +  + I+P+  + PG +  SNR     Y++ FG++ LS  T  E+DG    + P EARLR LTY++ L+V VT   F       E  E   EE  ++E+ G+IP+M++ +YC L D S+K +TEL EC +D+GGYF++NGSEKVLIA ER + N VYCF      K+SW  E RS  E   +P     +QM  +        GHQIRA +P + Q IPVV++FRALGF +DR +L++I YD +D
Sbjct:   16 AVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQK--SNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQAGTVPIEEQEPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTD 291          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A7S1C2I4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2I4_9STRA)

HSP 1 Score: 254 bits (650), Expect = 5.440e-74
Identity = 128/268 (47.76%), Postives = 176/268 (65.67%), Query Frame = 0
Query:    2 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNR--YEVGFGEVALSYPTHDEADGE-GVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGD-RSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYD 265
            +I A+F +KGLV+QQLDSF+ F+   + ++++ T  + I P R +APG         Y + FG   LS PTH+E   E    L P  ARLR LTY S LF+ +T   FD +TGE  GE +E     G++P MV  ++C L   ++K+ TELGEC FD+GGYF++NGSEKV+IALERQ++NRVYCF  K+P K SW  E+RS+ +  N+PI   ++ M   G  R   HEG+QIRAR+P + + IP+V+LFRALG  +D+ VLD +VYD
Sbjct:   45 IIRAFFKDKGLVKQQLDSFDLFVETTLQEIIEDTPHIEIRPNRQYAPGDAAVDPNVGYRITFGGAYLSKPTHNEEGSETSAPLFPSAARLRNLTYESNLFLEMTCQPFDTDTGEAAGEADEQTLLCGSVPTMVMSRFCRLYGQTDKIKTELGECVFDQGGYFVINGSEKVIIALERQSYNRVYCFEKKQPSKFSWVGEVRSRLDRSNRPISSLDILMYTSGGGRRGTHEGNQIRARVPYIREDIPIVILFRALGCVADKKVLDRVVYD 312          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 9.120e-72
Identity = 117/277 (42.24%), Postives = 178/277 (64.26%), Query Frame = 0
Query:    2 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENES----------QEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 268
            +I AYF EKGLVRQQLDSF+EFL + + ++V     + I+P+  + PG +     +++ FG+V L+ PT  E DG    + P EARLR LTY S L+  ++   ++ + G+R  EE E           +E+ G +P+M++  +C L + ++K +TELGEC +D+GGYF++NGSEKVLIA ER + N VYCF  ++P K +WT+E+RS  ++  +P     LQM  +G +     G  IRA+LP +   +PVV++FRALG+ +D+ +L++IVYD SD
Sbjct:  112 VISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSD 388          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A2G9G3E3_9LAMI (DNA-directed RNA polymerase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9G3E3_9LAMI)

HSP 1 Score: 228 bits (582), Expect = 2.760e-70
Identity = 120/274 (43.80%), Postives = 174/274 (63.50%), Query Frame = 0
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 268
            A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+    PG  ++     Y++ FG++ LS P   E+DGE   L P+ ARLR LTY++ L+V VT      + G    E  E+Q++     G +P+M++  YC L   SEK +TELGEC +D GGYFI+NGSEKVLIA E+ + N VY F  ++P+K+++  E+RS  E  N+P     ++ML R        G  IRA LP +   IP++++FRALGF +D+ +L++I Y+ SD
Sbjct:   34 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAEIEIRPESQHNPGHQSDFAETIYKITFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI--KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDHGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFSD 305          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A3P6C3H5_BRAOL (DNA-directed RNA polymerase (Fragment) n=2 Tax=Brassica TaxID=3705 RepID=A0A3P6C3H5_BRAOL)

HSP 1 Score: 229 bits (583), Expect = 2.950e-70
Identity = 118/274 (43.07%), Postives = 178/274 (64.96%), Query Frame = 0
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 268
            A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+    PG  ++     Y++ FG++ LS P   E+DGE   L P+ ARLR LTY++ L+V V+      + G    E  E+Q++     G +P+M++  YC L   SEK +TELGEC +D+GGYFI+NGSEKVLIA E+ + N+VY F  ++P+K+++  E+RS  E+ N+P     ++ML R +      G  IR  LP + + IP++++FRALGF +D+ +L++I YD +D
Sbjct:   30 AVISAYFEEKGLVRQQLDSFDEFIQNSMQEIVDESADIEIRPESQHNPGHQSDFTETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVI--KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNQVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARANAKGGSSGQYIRCTLPYIKKEIPIIIVFRALGFVADKDILEHICYDFAD 301          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: UPI00200978D5 (DNA-directed RNA polymerase II subunit RPB2-like n=2 Tax=Mesangiospermae TaxID=1437183 RepID=UPI00200978D5)

HSP 1 Score: 227 bits (579), Expect = 1.710e-69
Identity = 119/274 (43.43%), Postives = 173/274 (63.14%), Query Frame = 0
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 268
            A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+    PG   +     Y++ FG++ LS P   E+DGE   L P+ ARLR LTY++ L+V VT      + G    E  E+Q++     G +P+M++  YC L   SEK +TELGEC +D+GGYFI+NGSEKVLIA E+ + N VY F  ++P+K+++  E+RS  E  N+P     ++ML R        G  IRA LP +   IP++++FRALGF +D+ +L++I Y+  D
Sbjct:   42 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKVI--KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQD 313          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A024TRP0_9STRA (DNA-directed RNA polymerase subunit beta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TRP0_9STRA)

HSP 1 Score: 241 bits (615), Expect = 3.010e-69
Identity = 127/278 (45.68%), Postives = 177/278 (63.67%), Query Frame = 0
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNR-----YEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDN-----ETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 268
            A+I AYF EKGLVRQQLDSF+EF+ N + +++D +  + I+P+  + PG +  SNR     Y++ FG++ LS  T  E+DG    + P EARLR LTY++ L+V VT   F       E  E   EE  ++E+ G+IP+M++ +YC L D S+K +TEL EC +D+GGYF++NGSEKVLIA ER + N VYCF      K+SW  E RS  E   +P     +QM  +        GHQIRA +P + Q IPVV++FRALGF +DR +L++I YD +D
Sbjct:   16 AVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQK--SNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQAGTVPIEEQEPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTD 291          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A453LQ85_AEGTS (DNA-directed RNA polymerase n=7 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LQ85_AEGTS)

HSP 1 Score: 230 bits (587), Expect = 4.770e-69
Identity = 120/274 (43.80%), Postives = 174/274 (63.50%), Query Frame = 0
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 268
            A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+    PG   E     +++ FG++ LS P   EADGE   L P+ ARLR LTY++ L+V V++     + G    E  E+ E+     G +P+M++  YC L   SEK +TELGEC +D+GGYF++NGSEKVLIA E+ + N VY F  ++P+K ++  E+RS  E+ N+P     ++ML R        G  IRA LP +   IP++++FRALGF +D+ +L++I YD SD
Sbjct:  100 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVV--KKGHDCEEVTETAEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVGEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSD 371          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DDD1_CAFRO2.890e-7949.07DNA-directed RNA polymerase subunit beta n=4 Tax=C... [more]
A0A482SAA6_9ARCH8.280e-7644.73DNA-directed RNA polymerase n=1 Tax=archaeon TaxID... [more]
A0A3R7CZ86_9STRA3.520e-7545.68DNA-directed RNA polymerase n=1 Tax=Aphanomyces in... [more]
A0A7S1C2I4_9STRA5.440e-7447.76DNA-directed RNA polymerase subunit beta n=1 Tax=B... [more]
A0A6H5JJ47_9PHAE9.120e-7242.24DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A2G9G3E3_9LAMI2.760e-7043.80DNA-directed RNA polymerase n=1 Tax=Handroanthus i... [more]
A0A3P6C3H5_BRAOL2.950e-7043.07DNA-directed RNA polymerase (Fragment) n=2 Tax=Bra... [more]
UPI00200978D51.710e-6943.43DNA-directed RNA polymerase II subunit RPB2-like n... [more]
A0A024TRP0_9STRA3.010e-6945.68DNA-directed RNA polymerase subunit beta n=17 Tax=... [more]
A0A453LQ85_AEGTS4.770e-6943.80DNA-directed RNA polymerase n=7 Tax=Aegilops tausc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 11..174
e-value: 5.6E-42
score: 143.5
NoneNo IPR availableGENE3D3.90.1100.10coord: 4..175
e-value: 6.2E-11
score: 43.9
NoneNo IPR availablePANTHERPTHR20856:SF7DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2coord: 2..267
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..266
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10coord: 178..268
e-value: 5.7E-23
score: 83.4
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 218..267
e-value: 1.3E-6
score: 28.1
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 2..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79655contigM-pyrifera_M_contig79655:1..804 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79655.18695.1mRNA_M-pyrifera_M_contig79655.18695.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig79655 1..804 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig79655.18695.1 ID=prot_M-pyrifera_M_contig79655.18695.1|Name=mRNA_M-pyrifera_M_contig79655.18695.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=268bp
ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGT
ELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVT
VTWSAFDNETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELG
ECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQ
TEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRAL
GFDSDRHVLDYIVYDDSD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007644RNA_pol_bsu_protrusion
IPR037034RNA_pol_Rpb2_2_sf
IPR007642RNA_pol_Rpb2_2
IPR015712DNA-dir_RNA_pol_su2