mRNA_M-pyrifera_M_contig79655.18695.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79655.18695.1
Unique NamemRNA_M-pyrifera_M_contig79655.18695.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A5A8DDD1_CAFRO (DNA-directed RNA polymerase subunit beta n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDD1_CAFRO)

HSP 1 Score: 270 bits (690), Expect = 2.890e-79
Identity = 132/269 (49.07%), Postives = 180/269 (66.91%), Query Frame = 1
Query:    4 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNRYEVGFGEVALSYPTHDEAD-GEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQE-WFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804
            +I AYF EKGLVRQQLDSFN F++N + D+V  T ++++ P+RT+ P   +  NRYEV F +V +  P + EAD     ++ P EAR R LTY S +F  V W  ++N T E      E +  W GNIP+MV+  +C LR  S++  TELGECKFD+GGYF+VNGSEKV+IA ERQA+NRVYCF  ++P K SW  E+RSQTE+ ++P+    + M R+ +R DV  G+ IR RL  + Q IPVV +F A+G+ + R+ L +IVYD  D
Sbjct:   48 VIKAYFDEKGLVRQQLDSFNRFISNSVVDMVTNTPKMSLRPKRTYLPSVTVFPNRYEVWFADVQIGRPVNMEADESTSREIFPAEARHRNLTYQSSMFTHVVWRGYNNATDEPVTPAPEQERCWIGNIPIMVQSHFCRLRGLSDRAKTELGECKFDQGGYFVVNGSEKVIIAQERQAYNRVYCFEMRQPSKLSWRAEIRSQTENSSRPLSALNVVMYRKSERGDVQTGNNIRVRLQSIRQDIPVVTVFMAMGYVNARNTLSHIVYDPED 316          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A482SAA6_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAA6_9ARCH)

HSP 1 Score: 243 bits (619), Expect = 8.280e-76
Identity = 123/275 (44.73%), Postives = 178/275 (64.73%), Query Frame = 1
Query:    4 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAF----DNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804
            +ID YF EKGLVRQQ+DSF+EF+TN I D++D    + I P+R +    ++  + + + FG++ ++ P   EADGE  +L PQEARLR LTY SQ+FV V    F    D +   R      S+ +     GNIP+M++ +YC L    ++ +T++GEC FD+GGYF++NGSEKV+IA ER + N VY F  ++PHK+ W TE+RS  +   +P    +LQM + G +  + +GHQI   LP + + +P+VV+FRALGF SD+ VL +IVYD SD
Sbjct:   35 VIDRYFEEKGLVRQQIDSFDEFITNTIQDLIDDAGEIFIKPERQYLSMNDIEQHGHRIKFGQIYVTQPVIYEADGEQRELYPQEARLRNLTYQSQIFVDVKVEEFKLDEDGKVDWRNDLPINSKRFDMIKLGNIPIMLRSRYCILNSRMDRDLTKVGECVFDQGGYFVINGSEKVMIAQERLSNNHVYVFKKQQPHKYEWVTEIRSHVDTGARPTSTCQLQMSKMGGKLAI-DGHQISCSLPYIREPVPIVVVFRALGFISDKDVLQHIVYDFSD 308          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A3R7CZ86_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7CZ86_9STRA)

HSP 1 Score: 241 bits (615), Expect = 3.520e-75
Identity = 127/278 (45.68%), Postives = 177/278 (63.67%), Query Frame = 1
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNR-----YEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDN-----ETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804
            A+I AYF EKGLVRQQLDSF+EF+ N + +++D +  + I+P+  + PG +  SNR     Y++ FG++ LS  T  E+DG    + P EARLR LTY++ L+V VT   F       E  E   EE  ++E+ G+IP+M++ +YC L D S+K +TEL EC +D+GGYF++NGSEKVLIA ER + N VYCF      K+SW  E RS  E   +P     +QM  +        GHQIRA +P + Q IPVV++FRALGF +DR +L++I YD +D
Sbjct:   16 AVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQK--SNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQAGTVPIEEQEPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTD 291          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A7S1C2I4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2I4_9STRA)

HSP 1 Score: 254 bits (650), Expect = 5.440e-74
Identity = 128/268 (47.76%), Postives = 176/268 (65.67%), Query Frame = 1
Query:    4 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNR--YEVGFGEVALSYPTHDEADGE-GVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGD-RSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYD 795
            +I A+F +KGLV+QQLDSF+ F+   + ++++ T  + I P R +APG         Y + FG   LS PTH+E   E    L P  ARLR LTY S LF+ +T   FD +TGE  GE +E     G++P MV  ++C L   ++K+ TELGEC FD+GGYF++NGSEKV+IALERQ++NRVYCF  K+P K SW  E+RS+ +  N+PI   ++ M   G  R   HEG+QIRAR+P + + IP+V+LFRALG  +D+ VLD +VYD
Sbjct:   45 IIRAFFKDKGLVKQQLDSFDLFVETTLQEIIEDTPHIEIRPNRQYAPGDAAVDPNVGYRITFGGAYLSKPTHNEEGSETSAPLFPSAARLRNLTYESNLFLEMTCQPFDTDTGEAAGEADEQTLLCGSVPTMVMSRFCRLYGQTDKIKTELGECVFDQGGYFVINGSEKVIIALERQSYNRVYCFEKKQPSKFSWVGEVRSRLDRSNRPISSLDILMYTSGGGRRGTHEGNQIRARVPYIREDIPIVILFRALGCVADKKVLDRVVYD 312          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 9.120e-72
Identity = 117/277 (42.24%), Postives = 178/277 (64.26%), Query Frame = 1
Query:    4 LIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENES----------QEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804
            +I AYF EKGLVRQQLDSF+EFL + + ++V     + I+P+  + PG +     +++ FG+V L+ PT  E DG    + P EARLR LTY S L+  ++   ++ + G+R  EE E           +E+ G +P+M++  +C L + ++K +TELGEC +D+GGYF++NGSEKVLIA ER + N VYCF  ++P K +WT+E+RS  ++  +P     LQM  +G +     G  IRA+LP +   +PVV++FRALG+ +D+ +L++IVYD SD
Sbjct:  112 VISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSD 388          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A2G9G3E3_9LAMI (DNA-directed RNA polymerase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9G3E3_9LAMI)

HSP 1 Score: 228 bits (582), Expect = 2.760e-70
Identity = 120/274 (43.80%), Postives = 174/274 (63.50%), Query Frame = 1
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804
            A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+    PG  ++     Y++ FG++ LS P   E+DGE   L P+ ARLR LTY++ L+V VT      + G    E  E+Q++     G +P+M++  YC L   SEK +TELGEC +D GGYFI+NGSEKVLIA E+ + N VY F  ++P+K+++  E+RS  E  N+P     ++ML R        G  IRA LP +   IP++++FRALGF +D+ +L++I Y+ SD
Sbjct:   34 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAEIEIRPESQHNPGHQSDFAETIYKITFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI--KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDHGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFSD 305          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A3P6C3H5_BRAOL (DNA-directed RNA polymerase (Fragment) n=2 Tax=Brassica TaxID=3705 RepID=A0A3P6C3H5_BRAOL)

HSP 1 Score: 229 bits (583), Expect = 2.950e-70
Identity = 118/274 (43.07%), Postives = 178/274 (64.96%), Query Frame = 1
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804
            A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+    PG  ++     Y++ FG++ LS P   E+DGE   L P+ ARLR LTY++ L+V V+      + G    E  E+Q++     G +P+M++  YC L   SEK +TELGEC +D+GGYFI+NGSEKVLIA E+ + N+VY F  ++P+K+++  E+RS  E+ N+P     ++ML R +      G  IR  LP + + IP++++FRALGF +D+ +L++I YD +D
Sbjct:   30 AVISAYFEEKGLVRQQLDSFDEFIQNSMQEIVDESADIEIRPESQHNPGHQSDFTETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVI--KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNQVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARANAKGGSSGQYIRCTLPYIKKEIPIIIVFRALGFVADKDILEHICYDFAD 301          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: UPI00200978D5 (DNA-directed RNA polymerase II subunit RPB2-like n=2 Tax=Mesangiospermae TaxID=1437183 RepID=UPI00200978D5)

HSP 1 Score: 227 bits (579), Expect = 1.710e-69
Identity = 119/274 (43.43%), Postives = 173/274 (63.14%), Query Frame = 1
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804
            A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+    PG   +     Y++ FG++ LS P   E+DGE   L P+ ARLR LTY++ L+V VT      + G    E  E+Q++     G +P+M++  YC L   SEK +TELGEC +D+GGYFI+NGSEKVLIA E+ + N VY F  ++P+K+++  E+RS  E  N+P     ++ML R        G  IRA LP +   IP++++FRALGF +D+ +L++I Y+  D
Sbjct:   42 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKVI--KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFQD 313          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A024TRP0_9STRA (DNA-directed RNA polymerase subunit beta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TRP0_9STRA)

HSP 1 Score: 241 bits (615), Expect = 3.010e-69
Identity = 127/278 (45.68%), Postives = 177/278 (63.67%), Query Frame = 1
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGTELHSNR-----YEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDN-----ETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804
            A+I AYF EKGLVRQQLDSF+EF+ N + +++D +  + I+P+  + PG +  SNR     Y++ FG++ LS  T  E+DG    + P EARLR LTY++ L+V VT   F       E  E   EE  ++E+ G+IP+M++ +YC L D S+K +TEL EC +D+GGYF++NGSEKVLIA ER + N VYCF      K+SW  E RS  E   +P     +QM  +        GHQIRA +P + Q IPVV++FRALGF +DR +L++I YD +D
Sbjct:   16 AVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQK--SNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQAGTVPIEEQEPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTD 291          
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Match: A0A453LQ85_AEGTS (DNA-directed RNA polymerase n=7 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LQ85_AEGTS)

HSP 1 Score: 230 bits (587), Expect = 4.770e-69
Identity = 120/274 (43.80%), Postives = 174/274 (63.50%), Query Frame = 1
Query:    1 ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPG--TELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVTVTWSAFDNETGERRGEENESQEW----FGNIPMMVKGQYCFLRDASEKLMTELGECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQTEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRALGFDSDRHVLDYIVYDDSD 804
            A+I AYF EKGLVRQQLDSF+EF+ N + ++VD +A + I P+    PG   E     +++ FG++ LS P   EADGE   L P+ ARLR LTY++ L+V V++     + G    E  E+ E+     G +P+M++  YC L   SEK +TELGEC +D+GGYF++NGSEKVLIA E+ + N VY F  ++P+K ++  E+RS  E+ N+P     ++ML R        G  IRA LP +   IP++++FRALGF +D+ +L++I YD SD
Sbjct:  100 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVV--KKGHDCEEVTETAEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVGEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSD 371          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79655.18695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DDD1_CAFRO2.890e-7949.07DNA-directed RNA polymerase subunit beta n=4 Tax=C... [more]
A0A482SAA6_9ARCH8.280e-7644.73DNA-directed RNA polymerase n=1 Tax=archaeon TaxID... [more]
A0A3R7CZ86_9STRA3.520e-7545.68DNA-directed RNA polymerase n=1 Tax=Aphanomyces in... [more]
A0A7S1C2I4_9STRA5.440e-7447.76DNA-directed RNA polymerase subunit beta n=1 Tax=B... [more]
A0A6H5JJ47_9PHAE9.120e-7242.24DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A2G9G3E3_9LAMI2.760e-7043.80DNA-directed RNA polymerase n=1 Tax=Handroanthus i... [more]
A0A3P6C3H5_BRAOL2.950e-7043.07DNA-directed RNA polymerase (Fragment) n=2 Tax=Bra... [more]
UPI00200978D51.710e-6943.43DNA-directed RNA polymerase II subunit RPB2-like n... [more]
A0A024TRP0_9STRA3.010e-6945.68DNA-directed RNA polymerase subunit beta n=17 Tax=... [more]
A0A453LQ85_AEGTS4.770e-6943.80DNA-directed RNA polymerase n=7 Tax=Aegilops tausc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79655contigM-pyrifera_M_contig79655:1..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue2.4e-62
Seed eggNOG ortholog112098.XP_008612574.1
Preferred nameRPB2
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size804
Cds size804
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.2170873-CDS-M-pyrifera_M_contig79655:0..8041622816700.2170873-CDS-M-pyrifera_M_contig79655:0..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79655 1..804 -
1692278127.4513907-CDS-M-pyrifera_M_contig79655:0..8041692278127.4513907-CDS-M-pyrifera_M_contig79655:0..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79655 1..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79655.18695.1prot_M-pyrifera_M_contig79655.18695.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79655 1..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79655.18695.1

>prot_M-pyrifera_M_contig79655.18695.1 ID=prot_M-pyrifera_M_contig79655.18695.1|Name=mRNA_M-pyrifera_M_contig79655.18695.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=268bp
ALIDAYFHEKGLVRQQLDSFNEFLTNLIPDVVDGTARLNISPQRTFAPGT
ELHSNRYEVGFGEVALSYPTHDEADGEGVDLRPQEARLRRLTYASQLFVT
VTWSAFDNETGERRGEENESQEWFGNIPMMVKGQYCFLRDASEKLMTELG
ECKFDEGGYFIVNGSEKVLIALERQAWNRVYCFHYKKPHKHSWTTELRSQ
TEHINKPIQPFELQMLRRGDRSDVHEGHQIRARLPRVTQAIPVVVLFRAL
GFDSDRHVLDYIVYDDSD
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mRNA from alignment at M-pyrifera_M_contig79655:1..804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79655.18695.1 ID=mRNA_M-pyrifera_M_contig79655.18695.1|Name=mRNA_M-pyrifera_M_contig79655.18695.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig79655:1..804- (Macrocystis pyrifera P11B4 male)
GCTTTAATTGATGCGTACTTTCATGAGAAAGGGCTGGTGCGGCAGCAACT GGATTCCTTCAATGAATTCTTGACCAACTTGATTCCAGACGTGGTGGATG GAACTGCTAGATTGAATATTAGCCCACAACGTACGTTTGCACCGGGCACA GAGTTGCATTCCAACCGGTACGAGGTTGGGTTTGGAGAAGTTGCATTGTC ATACCCAACGCATGACGAGGCGGATGGAGAAGGTGTGGATTTACGTCCAC AAGAGGCTCGATTGCGACGATTGACGTATGCGTCGCAATTGTTTGTGACT GTGACATGGAGTGCGTTTGATAATGAGACGGGAGAAAGACGTGGAGAGGA GAATGAGTCACAAGAATGGTTTGGAAACATTCCAATGATGGTCAAGGGAC AGTATTGTTTCTTGCGTGATGCCTCTGAAAAGTTGATGACAGAGTTGGGA GAGTGCAAGTTTGATGAAGGTGGGTACTTCATTGTGAATGGTTCAGAAAA GGTGTTGATTGCGTTGGAGAGACAAGCTTGGAACAGAGTGTATTGCTTCC ACTACAAGAAGCCACACAAGCACTCTTGGACCACAGAGTTGAGAAGCCAA ACGGAGCATATCAATAAGCCAATTCAACCTTTCGAACTTCAAATGCTGCG TCGTGGAGACCGAAGCGATGTGCATGAAGGCCATCAAATTCGGGCAAGAC TTCCTCGTGTCACACAAGCAATTCCTGTCGTGGTGTTGTTCCGTGCGCTT GGGTTCGACAGTGATCGTCACGTGTTGGATTACATTGTGTATGATGACAG TGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79655:1..804-

>mRNA_M-pyrifera_M_contig79655.18695.1 ID=mRNA_M-pyrifera_M_contig79655.18695.1|Name=mRNA_M-pyrifera_M_contig79655.18695.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1608bp|location=Sequence derived from alignment at M-pyrifera_M_contig79655:1..804- (Macrocystis pyrifera P11B4 male)
GCTTTAATTGATGCGTACTTTCATGAGAAAGGGCTGGTGCGGCAGCAACT
GGATTCCTTCAATGAATTCTTGACCAACTTGATTCCAGACGTGGTGGATG
GAACTGCTAGATTGAATATTAGCCCACAACGTACGTTTGCACCGGGCACA
GAGTTGCATTCCAACCGGTACGAGGTTGGGTTTGGAGAAGTTGCATTGTC
ATACCCAACGCATGACGAGGCGGATGGAGAAGGTGTGGATTTACGTCCAC
AAGAGGCTCGATTGCGACGATTGACGTATGCGTCGCAATTGTTTGTGACT
GTGACATGGAGTGCGTTTGATAATGAGACGGGAGAAAGACGTGGAGAGGA
GAATGAGTCACAAGAATGGTTTGGAAACATTCCAATGATGGTCAAGGGAC
AGTATTGTTTCTTGCGTGATGCCTCTGAAAAGTTGATGACAGAGTTGGGA
GAGTGCAAGTTTGATGAAGGTGGGTACTTCATTGTGAATGGTTCAGAAAA
GGTGTTGATTGCGTTGGAGAGACAAGCTTGGAACAGAGTGTATTGCTTCC
ACTACAAGAAGCCACACAAGCACTCTTGGACCACAGAGTTGAGAAGCCAA
ACGGAGCATATCAATAAGCCAATTCAACCTTTCGAACTTCAAATGCTGCG
TCGTGGAGACCGAAGCGATGTGCATGAAGGCCATCAAATTCGGGCAAGAC
TTCCTCGTGTCACACAAGCAATTCCTGTCGTGGTGTTGTTCCGTGCGCTT
GGGTTCGACAGTGATCGTCACGTGTTGGATTACATTGTGTATGATGACAG
TGACGCTTTAATTGATGCGTACTTTCATGAGAAAGGGCTGGTGCGGCAGC
AACTGGATTCCTTCAATGAATTCTTGACCAACTTGATTCCAGACGTGGTG
GATGGAACTGCTAGATTGAATATTAGCCCACAACGTACGTTTGCACCGGG
CACAGAGTTGCATTCCAACCGGTACGAGGTTGGGTTTGGAGAAGTTGCAT
TGTCATACCCAACGCATGACGAGGCGGATGGAGAAGGTGTGGATTTACGT
CCACAAGAGGCTCGATTGCGACGATTGACGTATGCGTCGCAATTGTTTGT
GACTGTGACATGGAGTGCGTTTGATAATGAGACGGGAGAAAGACGTGGAG
AGGAGAATGAGTCACAAGAATGGTTTGGAAACATTCCAATGATGGTCAAG
GGACAGTATTGTTTCTTGCGTGATGCCTCTGAAAAGTTGATGACAGAGTT
GGGAGAGTGCAAGTTTGATGAAGGTGGGTACTTCATTGTGAATGGTTCAG
AAAAGGTGTTGATTGCGTTGGAGAGACAAGCTTGGAACAGAGTGTATTGC
TTCCACTACAAGAAGCCACACAAGCACTCTTGGACCACAGAGTTGAGAAG
CCAAACGGAGCATATCAATAAGCCAATTCAACCTTTCGAACTTCAAATGC
TGCGTCGTGGAGACCGAAGCGATGTGCATGAAGGCCATCAAATTCGGGCA
AGACTTCCTCGTGTCACACAAGCAATTCCTGTCGTGGTGTTGTTCCGTGC
GCTTGGGTTCGACAGTGATCGTCACGTGTTGGATTACATTGTGTATGATG
ACAGTGAC
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