mRNA_M-pyrifera_M_contig7959.18680.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7959.18680.1
Unique NamemRNA_M-pyrifera_M_contig7959.18680.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7959.18680.1 vs. uniprot
Match: D8LM84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM84_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 1.640e-89
Identity = 203/285 (71.23%), Postives = 218/285 (76.49%), Query Frame = 1 
Query:    1 DDLPVPFGDVVSLMLAQLRRKNVKFRRVAAVSLAALLDAFPECCVYDMVAPTLLDFAALDGPRPDGKED-------PIMQARAVACLAAAWPRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMKNEVAFALHEAVRNVQRAHAEGLTRALSGAVQRKVWSVRVPIYHALAAVVGRSYTVPSSTAGGGGDGQGAASSPPVLTGSLLSDVVHAVELGAEDAKYSQVRAAAVSVVVAMTARKELRLALTPHKEGLVNAARTAAEDPEPRVAVEGSKAAQNLSWWP 834
            DD P PFGDVV+LML+QLRRK+ KF R AA SLA LLDAFPECCVYD+VAPTLL+ A LDG               PIMQARAVACLAAAWPR P XXXXXXXXXXXXXXXXXXXXXXXXXXX A + +      +AV NVQRAHA  LTR LSGA+  KVWSVRVPIY AL+A+V R+     S A             PVLTGSLL+DVV AVELGAEDAKYSQVRAAA+SVV AMT RKELRLALTPHKEGL  AARTAAEDPEP+VAVEGSKAAQNLSWWP
Sbjct: 2013 DDSPTPFGDVVALMLSQLRRKDTKFGRAAASSLAVLLDAFPECCVYDLVAPTLLELAGLDGAAAGXXXXXXXXXXXPIMQARAVACLAAAWPRVPAXXXXXXXXXXXXXXXXXXXXXXXXXXX-ARQADATTTRIDAVCNVQRAHAASLTRVLSGAILLKVWSVRVPIYGALSAIVSRTTAAAESRA-------------PVLTGSLLADVVRAVELGAEDAKYSQVRAAAISVVGAMTCRKELRLALTPHKEGLAGAARTAAEDPEPKVAVEGSKAAQNLSWWP 2283
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BLAST of mRNA_M-pyrifera_M_contig7959.18680.1 vs. uniprot
Match: A0A836CAR0_9STRA (Proteasome stabiliser-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.880e-7
Identity = 40/110 (36.36%), Postives = 50/110 (45.45%), Query Frame = 1 
Query:   13 VPFGDVVSLMLAQLRRKNVKFRRVAAVSLAALLDAFPECCVYDMVAPTLLDFAALDGPRPDGKED----------------------------PIMQARAVACLAAAWPR 258
            + +G+VV L++ QL R++   RR AA S+AAL  AFPEC  +   APTLL  A L                                      P+MQARAV  L AAWPR
Sbjct: 2202 IAYGEVVGLLVRQLGRQSKLVRRAAASSVAALAPAFPECDTFAAAAPTLLRAALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVMQARAVEALTAAWPR 2311
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7959.18680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM84_ECTSI1.640e-8971.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAR0_9STRA7.880e-736.36Proteasome stabiliser-domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7959contigM-pyrifera_M_contig7959:5926..7699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.7
Seed ortholog evalue4.5e-80
Seed eggNOG ortholog2880.D8LM84
KEGG koko:K11886
Hectar predicted targeting categoryother localisation
EggNOG free text desc.proteasome assembly
EggNOG OGsKOG0915@1,KOG0915@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005705.1
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Exons3
Model size837
Cds size837
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7959.18680.1prot_M-pyrifera_M_contig7959.18680.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7959 5926..7699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.3699555-CDS-M-pyrifera_M_contig7959:5925..59841622816699.3699555-CDS-M-pyrifera_M_contig7959:5925..5984Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7959 5926..5984 +
1692278126.868886-CDS-M-pyrifera_M_contig7959:5925..59841692278126.868886-CDS-M-pyrifera_M_contig7959:5925..5984Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7959 5926..5984 +
1622816699.384601-CDS-M-pyrifera_M_contig7959:6410..70081622816699.384601-CDS-M-pyrifera_M_contig7959:6410..7008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7959 6411..7008 +
1692278126.8865502-CDS-M-pyrifera_M_contig7959:6410..70081692278126.8865502-CDS-M-pyrifera_M_contig7959:6410..7008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7959 6411..7008 +
1622816699.3987532-CDS-M-pyrifera_M_contig7959:7519..76991622816699.3987532-CDS-M-pyrifera_M_contig7959:7519..7699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7959 7520..7699 +
1692278126.8971267-CDS-M-pyrifera_M_contig7959:7519..76991692278126.8971267-CDS-M-pyrifera_M_contig7959:7519..7699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7959 7520..7699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7959.18680.1

>prot_M-pyrifera_M_contig7959.18680.1 ID=prot_M-pyrifera_M_contig7959.18680.1|Name=mRNA_M-pyrifera_M_contig7959.18680.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=279bp
DDLPVPFGDVVSLMLAQLRRKNVKFRRVAAVSLAALLDAFPECCVYDMVA
PTLLDFAALDGPRPDGKEDPIMQARAVACLAAAWPRAPPPVLGAAAGGDK
KEGSSQEKIATTVTAAAAMKNEVAFALHEAVRNVQRAHAEGLTRALSGAV
QRKVWSVRVPIYHALAAVVGRSYTVPSSTAGGGGDGQGAASSPPVLTGSL
LSDVVHAVELGAEDAKYSQVRAAAVSVVVAMTARKELRLALTPHKEGLVN
AARTAAEDPEPRVAVEGSKAAQNLSWWP*
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mRNA from alignment at M-pyrifera_M_contig7959:5926..7699+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7959.18680.1 ID=mRNA_M-pyrifera_M_contig7959.18680.1|Name=mRNA_M-pyrifera_M_contig7959.18680.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1774bp|location=Sequence derived from alignment at M-pyrifera_M_contig7959:5926..7699+ (Macrocystis pyrifera P11B4 male)
GACGATTTGCCGGTTCCGTTCGGGGATGTGGTCAGTTTGATGCTGGCTCA
GCTGCGGCGGTGAGGCTCTCGTTTTTTTAGCGCGTGCTTTTTGCCCAATC
TCGACTCGGATTTCGGGGGGCGAAGCTACCGAACTATGTTTCCTCGCTTG
CGCCTTTGTTGGTGTGTTCAGAACGCTCCGCAGCCCCTATCCGCCCGAAC
AAGCGGGACGCGTTTTGGCCTGCTTGTCTTGCCGCGTTTACAGCAGAGGA
GCGAAACGTTGCACTAAGTTGGCAACGTGTGTCTACGGTCTGCGCACCGT
CTTCGGGAATCGCGAAACGATTCCGGCATGATTTTCTTCGTCTGTTATTG
CCCTACTTATCTATCTCTGTATCTTTCTCCCCTGCTTTGCCTAGCAATGG
AAGAACGTGCTTCAACACTGCGAGACCCTCCCCCTCCCTTTAAACATGCC
ACGTCAATCCTCTCATCTGATTTGTTTGTGTGCAGCAAAAATGTCAAGTT
CCGGCGAGTCGCGGCCGTGTCCCTCGCGGCGCTCCTCGACGCCTTCCCGG
AGTGCTGCGTGTACGACATGGTGGCGCCCACCCTCCTCGACTTTGCGGCG
CTGGACGGGCCTCGACCAGACGGCAAGGAAGACCCCATCATGCAGGCGCG
GGCGGTGGCTTGTCTCGCGGCTGCCTGGCCTCGAGCGCCGCCCCCGGTAC
TTGGCGCAGCAGCGGGTGGGGACAAGAAGGAAGGGTCCAGTCAAGAAAAA
ATAGCGACGACGGTGACGGCGGCGGCAGCGATGAAGAACGAGGTCGCGTT
CGCTCTTCACGAGGCCGTTCGAAACGTTCAGCGCGCGCATGCGGAAGGGC
TGACGCGAGCACTGTCGGGGGCTGTGCAGCGCAAAGTCTGGAGCGTGCGG
GTTCCGATTTATCACGCCCTGGCGGCCGTGGTAGGCAGGAGTTACACAGT
GCCTTCCTCGACGGCCGGCGGCGGTGGTGACGGACAAGGCGCCGCTTCCT
CCCCTCCGGTGTTGACCGGGTCGCTTTTGTCGGACGTGGTGCACGCGGTA
GAGCTAGGGGCCGAGGACGCAAAGTACTCCCAGGTGCGGCTTCAAAATTC
GTCTACCTCTAGGCCTGATAGTCTCGTAGATTGTGCGCTTTGCGCCGCCG
CCACGAAAAGTTGATGCACTTAAGACATGCCTGATTTTGGGTGTGAATCG
AATGTTTATGCGAGCGTCGACATTTCCCAGCCACCCCCCCTCCTTCCGGG
AGCAGTTGCTGTGGAATCCGAAGACGGTAACGGATTCTAAATCGCTACCG
TACCGTAGTAGATGCTCCACTCCACCCCTCTCCACTCCACCACAACCATC
ATCCAACACGTCTGTGCTACACAATCTCTCCCTTCTACCTCGCTTGAAAG
CTTGGAAAGCCGGTCTATTCGCCGCACTCGTACGTACAGATACGAACGGT
GTTGGCAATACGAGTAGTACAGTTATTTTTCAGTACGTCGCAGTATGCGA
AGCCCCGACTCCTTCGCCTGCCTTTCTGCCCTCACGCTCAAGTGTACAGC
AAACAATCATTCTGCGCGCGCGCCATAATTGCCTTTACTGTTAGGTGAGG
GCGGCCGCTGTGTCCGTCGTGGTTGCGATGACGGCGCGCAAAGAGCTACG
GCTGGCGCTGACGCCGCACAAGGAGGGGCTCGTCAACGCCGCGAGGACAG
CCGCGGAAGACCCGGAGCCGAGGGTGGCGGTGGAGGGCAGCAAGGCGGCG
CAAAACCTTTCTTGGTGGCCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7959:5926..7699+

>mRNA_M-pyrifera_M_contig7959.18680.1 ID=mRNA_M-pyrifera_M_contig7959.18680.1|Name=mRNA_M-pyrifera_M_contig7959.18680.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1674bp|location=Sequence derived from alignment at M-pyrifera_M_contig7959:5926..7699+ (Macrocystis pyrifera P11B4 male)
GACGATTTGCCGGTTCCGTTCGGGGATGTGGTCAGTTTGATGCTGGCTCA
GCTGCGGCGGACGATTTGCCGGTTCCGTTCGGGGATGTGGTCAGTTTGAT
GCTGGCTCAGCTGCGGCGCAAAAATGTCAAGTTCCGGCGAGTCGCGGCCG
TGTCCCTCGCGGCGCTCCTCGACGCCTTCCCGGAGTGCTGCGTGTACGAC
ATGGTGGCGCCCACCCTCCTCGACTTTGCGGCGCTGGACGGGCCTCGACC
AGACGGCAAGGAAGACCCCATCATGCAGGCGCGGGCGGTGGCTTGTCTCG
CGGCTGCCTGGCCTCGAGCGCCGCCCCCGGTACTTGGCGCAGCAGCGGGT
GGGGACAAGAAGGAAGGGTCCAGTCAAGAAAAAATAGCGACGACGGTGAC
GGCGGCGGCAGCGATGAAGAACGAGGTCGCGTTCGCTCTTCACGAGGCCG
TTCGAAACGTTCAGCGCGCGCATGCGGAAGGGCTGACGCGAGCACTGTCG
GGGGCTGTGCAGCGCAAAGTCTGGAGCGTGCGGGTTCCGATTTATCACGC
CCTGGCGGCCGTGGTAGGCAGGAGTTACACAGTGCCTTCCTCGACGGCCG
GCGGCGGTGGTGACGGACAAGGCGCCGCTTCCTCCCCTCCGGTGTTGACC
GGGTCGCTTTTGTCGGACGTGGTGCACGCGGTAGAGCTAGGGGCCGAGGA
CGCAAAGTACTCCCAGCAAAAATGTCAAGTTCCGGCGAGTCGCGGCCGTG
TCCCTCGCGGCGCTCCTCGACGCCTTCCCGGAGTGCTGCGTGTACGACAT
GGTGGCGCCCACCCTCCTCGACTTTGCGGCGCTGGACGGGCCTCGACCAG
ACGGCAAGGAAGACCCCATCATGCAGGCGCGGGCGGTGGCTTGTCTCGCG
GCTGCCTGGCCTCGAGCGCCGCCCCCGGTACTTGGCGCAGCAGCGGGTGG
GGACAAGAAGGAAGGGTCCAGTCAAGAAAAAATAGCGACGACGGTGACGG
CGGCGGCAGCGATGAAGAACGAGGTCGCGTTCGCTCTTCACGAGGCCGTT
CGAAACGTTCAGCGCGCGCATGCGGAAGGGCTGACGCGAGCACTGTCGGG
GGCTGTGCAGCGCAAAGTCTGGAGCGTGCGGGTTCCGATTTATCACGCCC
TGGCGGCCGTGGTAGGCAGGAGTTACACAGTGCCTTCCTCGACGGCCGGC
GGCGGTGGTGACGGACAAGGCGCCGCTTCCTCCCCTCCGGTGTTGACCGG
GTCGCTTTTGTCGGACGTGGTGCACGCGGTAGAGCTAGGGGCCGAGGACG
CAAAGTACTCCCAGGTGAGGGCGGCCGCTGTGTCCGTCGTGGTTGCGATG
ACGGCGCGCAAAGAGCTACGGCTGGCGCTGACGCCGCACAAGGAGGGGCT
CGTCAACGCCGCGAGGACAGCCGCGGAAGACCCGGAGCCGAGGGTGGCGG
TGGAGGGCAGCAAGGCGGCGCAAAACCTTTCTTGGTGGCCTTAGGTGAGG
GCGGCCGCTGTGTCCGTCGTGGTTGCGATGACGGCGCGCAAAGAGCTACG
GCTGGCGCTGACGCCGCACAAGGAGGGGCTCGTCAACGCCGCGAGGACAG
CCGCGGAAGACCCGGAGCCGAGGGTGGCGGTGGAGGGCAGCAAGGCGGCG
CAAAACCTTTCTTGGTGGCCTTAG
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