prot_M-pyrifera_M_contig7959.18680.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig7959.18680.1
Unique Nameprot_M-pyrifera_M_contig7959.18680.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length279
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7959.18680.1 vs. uniprot
Match: D8LM84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM84_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 1.640e-89
Identity = 203/285 (71.23%), Postives = 218/285 (76.49%), Query Frame = 0 
Query:    1 DDLPVPFGDVVSLMLAQLRRKNVKFRRVAAVSLAALLDAFPECCVYDMVAPTLLDFAALDGPRPDGKED-------PIMQARAVACLAAAWPRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMKNEVAFALHEAVRNVQRAHAEGLTRALSGAVQRKVWSVRVPIYHALAAVVGRSYTVPSSTAGGGGDGQGAASSPPVLTGSLLSDVVHAVELGAEDAKYSQVRAAAVSVVVAMTARKELRLALTPHKEGLVNAARTAAEDPEPRVAVEGSKAAQNLSWWP 278
            DD P PFGDVV+LML+QLRRK+ KF R AA SLA LLDAFPECCVYD+VAPTLL+ A LDG               PIMQARAVACLAAAWPR P XXXXXXXXXXXXXXXXXXXXXXXXXXX A + +      +AV NVQRAHA  LTR LSGA+  KVWSVRVPIY AL+A+V R+     S A             PVLTGSLL+DVV AVELGAEDAKYSQVRAAA+SVV AMT RKELRLALTPHKEGL  AARTAAEDPEP+VAVEGSKAAQNLSWWP
Sbjct: 2013 DDSPTPFGDVVALMLSQLRRKDTKFGRAAASSLAVLLDAFPECCVYDLVAPTLLELAGLDGAAAGXXXXXXXXXXXPIMQARAVACLAAAWPRVPAXXXXXXXXXXXXXXXXXXXXXXXXXXX-ARQADATTTRIDAVCNVQRAHAASLTRVLSGAILLKVWSVRVPIYGALSAIVSRTTAAAESRA-------------PVLTGSLLADVVRAVELGAEDAKYSQVRAAAISVVGAMTCRKELRLALTPHKEGLAGAARTAAEDPEPKVAVEGSKAAQNLSWWP 2283
[Close]
BLAST of mRNA_M-pyrifera_M_contig7959.18680.1 vs. uniprot
Match: A0A836CAR0_9STRA (Proteasome stabiliser-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.880e-7
Identity = 40/110 (36.36%), Postives = 50/110 (45.45%), Query Frame = 0 
Query:    5 VPFGDVVSLMLAQLRRKNVKFRRVAAVSLAALLDAFPECCVYDMVAPTLLDFAALDGPRPDGKED----------------------------PIMQARAVACLAAAWPR 86
            + +G+VV L++ QL R++   RR AA S+AAL  AFPEC  +   APTLL  A L                                      P+MQARAV  L AAWPR
Sbjct: 2202 IAYGEVVGLLVRQLGRQSKLVRRAAASSVAALAPAFPECDTFAAAAPTLLRAALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVMQARAVEALTAAWPR 2311
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7959.18680.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM84_ECTSI1.640e-8971.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAR0_9STRA7.880e-736.36Proteasome stabiliser-domain-containing protein n=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 8..274

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7959contigM-pyrifera_M_contig7959:5926..7699 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7959.18680.1mRNA_M-pyrifera_M_contig7959.18680.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig7959 5926..7699 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig7959.18680.1 ID=prot_M-pyrifera_M_contig7959.18680.1|Name=mRNA_M-pyrifera_M_contig7959.18680.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=279bp
DDLPVPFGDVVSLMLAQLRRKNVKFRRVAAVSLAALLDAFPECCVYDMVA
PTLLDFAALDGPRPDGKEDPIMQARAVACLAAAWPRAPPPVLGAAAGGDK
KEGSSQEKIATTVTAAAAMKNEVAFALHEAVRNVQRAHAEGLTRALSGAV
QRKVWSVRVPIYHALAAVVGRSYTVPSSTAGGGGDGQGAASSPPVLTGSL
LSDVVHAVELGAEDAKYSQVRAAAVSVVVAMTARKELRLALTPHKEGLVN
AARTAAEDPEPRVAVEGSKAAQNLSWWP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold