mRNA_M-pyrifera_M_contig79152.18583.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79152.18583.1
Unique NamemRNA_M-pyrifera_M_contig79152.18583.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: D7G872_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G872_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 7.880e-77
Identity = 120/155 (77.42%), Postives = 140/155 (90.32%), Query Frame = 1
Query:    1 SYRYDGAMELSLHLVWKVVPGVIERTASESEGGLDIVSRWGFLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFKHDMVMVRKCTIIGMAAGLSAFFGVQLGG 465
            ++ YDGAMELSL +VWKV+PG +ER A ++E GL ++S+WGFLYT+A S+ LATAAG SIK+LGFPGDLP+V+HCVH+LGYVPM QTLPMI  SLFSIAAGGSLGPEAPLVAVSAS +G++SMHYF HDMVMVRKCTIIGM+AGLSAFFGVQLGG
Sbjct:   62 AFVYDGAMELSLKIVWKVIPGYLERIAEQAEDGLAMLSKWGFLYTIAASIFLATAAGASIKFLGFPGDLPDVVHCVHELGYVPMCQTLPMICCSLFSIAAGGSLGPEAPLVAVSASVSGYISMHYFNHDMVMVRKCTIIGMSAGLSAFFGVQLGG 216          
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: A0A836CDB9_9STRA (Chloride channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDB9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.100e-32
Identity = 78/152 (51.32%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   10 YDGAMELSLHLVWKVVPGVIERTASESEGGLDIVSRWGFLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFKHDMVMVRKCTIIGMAAGLSAFFGVQLGG 465
            YD AME  L LVW+ VP      A+E+  G      W  LYT+  +V L+ AAG SIK LGFPGDLPNV+ CVH+ G VP+ Q   M   SLFSIAAG SLGPEAPL                     MVRK T++GM+AGL+AFFGV LGG
Sbjct:   48 YDYAMESLLKLVWEQVPA-----AAEALWGPPGAYAW--LYTLLMAVLLSAAAGASIKLLGFPGDLPNVVECVHRHGCVPLRQAPAMAACSLFSIAAGASLGPEAPLAPS------------------MVRKATLMGMSAGLAAFFGVPLGG 174          
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: A0A5J4XNN3_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XNN3_9CHLO)

HSP 1 Score: 122 bits (306), Expect = 1.480e-29
Identity = 60/159 (37.74%), Postives = 90/159 (56.60%), Query Frame = 1
Query:    1 SYRYDGAMELSLHLVWKVVPGVIERTA----SESEGGLDIVSRWGFLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFKHDMVMVRKCTIIGMAAGLSAFFGVQLGG 465
            ++ Y+   E  +HL W++ P  +   A    S        VS+  ++YTV  S +    AG+  + LG PGDLP+ +  +H+ GY+ + ++  M   S FSIAAGGSLGPEAPL+A+  +   W      ++    +R C ++GM AGL+AFFGV LGG
Sbjct:   60 AWIYNSFFEAVVHLAWEIAPEKLVAPALTHLSNKVSWFPAVSKVAWVYTVLLSTTFGFLAGLVQRLLGSPGDLPDTVRDIHEQGYISINKSPSMFLCSTFSIAAGGSLGPEAPLLALCGATCSWFGKSVLRYKGQKLRNCALLGMTAGLAAFFGVALGG 218          
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: A0A1X6PBU2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBU2_PORUM)

HSP 1 Score: 122 bits (306), Expect = 1.540e-29
Identity = 72/157 (45.86%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    1 SYRYDGAMELSLHLVWKVVP-GVIERTASESEGGLDIVSRWGFLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFK-HDMVMVRKCTIIGMAAGLSAFFGVQLGG 465
            ++ Y   +EL L L W+ +P G+I+           I S   +L+   T +  A+  G+SI +LGFPGDL   ++CVH+LGYVPM     MI  S  SI AGGSLGPEAPLVA+ AS  GW+SM  F       +R  T+ GMA  L+AFFGV LGG
Sbjct:   83 AWIYYSILELLLDLFWEKLPEGLIKAFPG-------IPSSLYWLWIPVTGMMFASMVGISIYFLGFPGDLGYTVNCVHELGYVPMGHAPSMIVSSQASILAGGSLGPEAPLVAICASIAGWVSMVLFGVSGRKRLRAHTLSGMACALAAFFGVPLGG 232          
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: A0A8J9WP55_9CHLO (Probable chloride channel protein CLC-e n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WP55_9CHLO)

HSP 1 Score: 122 bits (306), Expect = 1.590e-29
Identity = 65/162 (40.12%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    1 SYRYDGAMELSLHLVWKVVPGVIERTASESEGGLDIVSRW-------GFLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFKHDMVMVRKCTIIGMAAGLSAFFGVQLGG 465
            ++ YD   E  L +VW+V+P   ++  +     L+    W        ++YT+A +  + T  GV+ + LG PGDLP V+H +H  G + + Q   M   S FSIAAGGSLGPEA L+A+  S T WL+   F      +R C ++GM AGL+AFFGV LGG
Sbjct:   75 AFVYDTYFEAILKVVWEVMP---DQVVTPLVNNLNTNLSWFPPLEKVAWVYTLAVATIMGTLVGVTQRVLGSPGDLPEVVHQIHTSGRIAISQAPSMFVCSAFSIAAGGSLGPEAALLALCGSTTSWLARKVFGARGQHLRNCALMGMTAGLAAFFGVALGG 233          
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: R7QI83_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI83_CHOCR)

HSP 1 Score: 122 bits (306), Expect = 1.820e-29
Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    1 SYRYDGAMELSLHLVWKVVPGVIERTASESEGGLDIVSRWGFLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFKHDMV-MVRKCTIIGMAAGLSAFFGVQLGG 465
            ++ Y   +E  L  +WK +P   E+ A      L     W ++  V   +  A   GVSIK +GFPGDL   + CVHK+GYVP+     M+  S  SI  GGSLGPEAPLVA+ AS  GW+S++ FK     +VRK T+ GMA  L+AFFGV LGG
Sbjct:  105 AFLYYTMLEFFLEFLWKTLP---EQLAESFPMWLPCF-HWVWIPIVG--MICAILVGVSIKVMGFPGDLAYTVKCVHKMGYVPIGHAPAMVASSQLSILGGGSLGPEAPLVAICASIAGWVSIYLFKQKYKNVVRKHTLCGMACALAAFFGVPLGG 254          
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: A0A7S0BQK1_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQK1_9RHOD)

HSP 1 Score: 121 bits (304), Expect = 2.390e-29
Identity = 69/157 (43.95%), Postives = 91/157 (57.96%), Query Frame = 1
Query:    1 SYRYDGAMELSLHLVWKVVP-GVIERTASESEGGLDIVSRWGFLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFKHDMV-MVRKCTIIGMAAGLSAFFGVQLGG 465
            +Y Y  A+E  L + W  +P G++       E        W  L+     ++ A   G+SI+ LGFPGDL   + CVH+ GYV M  T  M+  S FSI AG SLGPEAPLVA+ A+  GW+S + FKH    ++RK T+ GMA  L+AFFGV LGG
Sbjct:   57 AYLYYTALEWLLEIFWLKLPQGLVVDNPIWPEN-----LYW--LWIPIVCLTFAGLVGLSIEVLGFPGDLAYTVKCVHEFGYVDMGHTPSMVVASQFSIIAGASLGPEAPLVAICAAIAGWVSRNLFKHTQKNLIRKHTLCGMACALAAFFGVPLGG 206          
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: I0YW15_COCSC (Clc chloride channel n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YW15_COCSC)

HSP 1 Score: 120 bits (300), Expect = 1.490e-28
Identity = 63/159 (39.62%), Postives = 92/159 (57.86%), Query Frame = 1
Query:    1 SYRYDGAMELSLHLVWKVVPGVIERTA----SESEGGLDIVSRWGFLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFKHDMVMVRKCTIIGMAAGLSAFFGVQLGG 465
            ++ YD   E  L LVW+V+P  +        + +      + +  ++YT+A +  + T  GV+ ++LG PGDLP V+H +H  G + + Q   M   S FSIAAGGSLGPEA L+A+  S T +L+   F      +R C ++GM AGL+AFFGV LGG
Sbjct:   74 AFVYDTYFEAILKLVWEVMPHQVVTPLVNHLNTNVSWFPSLDKVAWVYTLAIATLMGTLVGVTQRFLGSPGDLPEVVHQIHTSGRIAISQAPSMFVCSAFSIAAGGSLGPEAALLALCGSTTSYLARKVFGARGQHLRNCALMGMTAGLAAFFGVALGG 232          
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: A0A7S2LJU1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LJU1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.720e-28
Identity = 69/153 (45.10%), Postives = 89/153 (58.17%), Query Frame = 1
Query:   16 GAMELSLHLVWKVVPGVIERTASESEGGLDIV--SRWGFLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFKH-DMVMVRKCTIIGMAAGLSAFFGVQLGG 465
            GA  L    +W V+  +      +S G  D V  S W FL+      +++   G+S+KYLG PGDL  V+ CVH   Y+     +PMI  S FSI  GGSLGPEAPLVA+ A   GWLS + FK  +  +VRK T++GM A L+AFFG  LGG
Sbjct:  133 GAALLYYKSLWAVLDYLWHDLPQDS-GFKDAVPESLW-FLWIAIIGFTMSAGVGLSVKYLGEPGDLAYVVKCVHNDAYIHESHMIPMIAASQFSILGGGSLGPEAPLVAICAGVAGWLSRNVFKTVNKNVVRKHTLMGMCAALAAFFGAPLGG 283          
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Match: A0A1E7EV89_9STRA (Clc chloride channel n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EV89_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.690e-26
Identity = 56/115 (48.70%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  124 FLYTVATSVSLATAAGVSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPEAPLVAVSASATGWLSMHYFKHDMV-MVRKCTIIGMAAGLSAFFGVQLGG 465
            +L+    S S+ T  G+++ Y+G PGDLP  I  VH   ++PM    PM+F SLFSI AGGSLGPEAPLVA+  +  G++S   F+     +VRK T +GM+  L+AFFGV LGG
Sbjct:  250 WLWIPLVSFSMVTLVGLTVIYMGEPGDLPYTISRVHAEAFIPMNHVTPMVFASLFSILAGGSLGPEAPLVAICGALGGFVSRRIFRQTSTNVVRKHTFMGMSGALAAFFGVPLGG 364          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79152.18583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G872_ECTSI7.880e-7777.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDB9_9STRA1.100e-3251.32Chloride channel n=1 Tax=Tribonema minus TaxID=303... [more]
A0A5J4XNN3_9CHLO1.480e-2937.74Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A1X6PBU2_PORUM1.540e-2945.86Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A8J9WP55_9CHLO1.590e-2940.12Probable chloride channel protein CLC-e n=1 Tax=Co... [more]
R7QI83_CHOCR1.820e-2944.87Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0BQK1_9RHOD2.390e-2943.95Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
I0YW15_COCSC1.490e-2839.62Clc chloride channel n=1 Tax=Coccomyxa subellipsoi... [more]
A0A7S2LJU1_9STRA4.720e-2845.10Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1E7EV89_9STRA2.690e-2648.70Clc chloride channel n=1 Tax=Fragilariopsis cylind... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79152contigM-pyrifera_M_contig79152:261..725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.8
Seed ortholog evalue1.6e-63
Seed eggNOG ortholog2880.D7G872
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Voltage gated chloride channel
EggNOG OGs2S9DC@2759,COG0038@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size444
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.5095837-UTR-M-pyrifera_M_contig79152:260..2811622816694.5095837-UTR-M-pyrifera_M_contig79152:260..281Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79152 261..281 +
1692278124.0481791-UTR-M-pyrifera_M_contig79152:260..2811692278124.0481791-UTR-M-pyrifera_M_contig79152:260..281Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig79152 261..281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.52286-CDS-M-pyrifera_M_contig79152:281..7251622816694.52286-CDS-M-pyrifera_M_contig79152:281..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79152 282..725 +
1692278124.067247-CDS-M-pyrifera_M_contig79152:281..7251692278124.067247-CDS-M-pyrifera_M_contig79152:281..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79152 282..725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79152.18583.1prot_M-pyrifera_M_contig79152.18583.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79152 282..725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79152.18583.1

>prot_M-pyrifera_M_contig79152.18583.1 ID=prot_M-pyrifera_M_contig79152.18583.1|Name=mRNA_M-pyrifera_M_contig79152.18583.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
MELSLHLVWKVVPGVIERTASESEGGLDIVSRWGFLYTVATSVSLATAAG
VSIKYLGFPGDLPNVIHCVHKLGYVPMEQTLPMIFVSLFSIAAGGSLGPE
APLVAVSASATGWLSMHYFKHDMVMVRKCTIIGMAAGLSAFFGVQLGG
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mRNA from alignment at M-pyrifera_M_contig79152:261..725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79152.18583.1 ID=mRNA_M-pyrifera_M_contig79152.18583.1|Name=mRNA_M-pyrifera_M_contig79152.18583.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig79152:261..725+ (Macrocystis pyrifera P11B4 male)
TCATACAGATATGATGGCGCCATGGAGCTATCCCTGCACCTCGTCTGGAA GGTGGTCCCAGGCGTTATCGAACGGACGGCTAGTGAGAGCGAGGGCGGGC TAGACATCGTTTCCCGCTGGGGCTTCCTCTACACAGTAGCCACCTCCGTC TCTCTGGCAACTGCTGCGGGTGTCAGCATCAAGTACCTCGGCTTTCCGGG CGACCTGCCCAACGTCATCCACTGCGTGCACAAGCTCGGATACGTTCCCA TGGAGCAGACCTTGCCGATGATTTTCGTCAGCCTCTTCAGCATCGCGGCG GGTGGCTCGCTCGGCCCCGAAGCCCCTCTGGTAGCTGTGTCGGCCTCTGC AACAGGCTGGCTGTCGATGCACTACTTCAAGCACGACATGGTGATGGTGC GGAAGTGCACCATCATCGGCATGGCGGCGGGCCTGAGCGCTTTCTTTGGC GTGCAGCTAGGCGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79152:261..725+

>mRNA_M-pyrifera_M_contig79152.18583.1 ID=mRNA_M-pyrifera_M_contig79152.18583.1|Name=mRNA_M-pyrifera_M_contig79152.18583.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig79152:261..725+ (Macrocystis pyrifera P11B4 male)
ATGGAGCTATCCCTGCACCTCGTCTGGAAGGTGGTCCCAGGCGTTATCGA
ACGGACGGCTAGTGAGAGCGAGGGCGGGCTAGACATCGTTTCCCGCTGGG
GCTTCCTCTACACAGTAGCCACCTCCGTCTCTCTGGCAACTGCTGCGGGT
GTCAGCATCAAGTACCTCGGCTTTCCGGGCGACCTGCCCAACGTCATCCA
CTGCGTGCACAAGCTCGGATACGTTCCCATGGAGCAGACCTTGCCGATGA
TTTTCGTCAGCCTCTTCAGCATCGCGGCGGGTGGCTCGCTCGGCCCCGAA
GCCCCTCTGGTAGCTGTGTCGGCCTCTGCAACAGGCTGGCTGTCGATGCA
CTACTTCAAGCACGACATGGTGATGGTGCGGAAGTGCACCATCATCGGCA
TGGCGGCGGGCCTGAGCGCTTTCTTTGGCGTGCAGCTAGGCGGTATGGAG
CTATCCCTGCACCTCGTCTGGAAGGTGGTCCCAGGCGTTATCGAACGGAC
GGCTAGTGAGAGCGAGGGCGGGCTAGACATCGTTTCCCGCTGGGGCTTCC
TCTACACAGTAGCCACCTCCGTCTCTCTGGCAACTGCTGCGGGTGTCAGC
ATCAAGTACCTCGGCTTTCCGGGCGACCTGCCCAACGTCATCCACTGCGT
GCACAAGCTCGGATACGTTCCCATGGAGCAGACCTTGCCGATGATTTTCG
TCAGCCTCTTCAGCATCGCGGCGGGTGGCTCGCTCGGCCCCGAAGCCCCT
CTGGTAGCTGTGTCGGCCTCTGCAACAGGCTGGCTGTCGATGCACTACTT
CAAGCACGACATGGTGATGGTGCGGAAGTGCACCATCATCGGCATGGCGG
CGGGCCTGAGCGCTTTCTTTGGCGTGCAGCTAGGCGGT
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