mRNA_M-pyrifera_M_contig78914.18536.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78914.18536.1
Unique NamemRNA_M-pyrifera_M_contig78914.18536.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI00041EE41B (GAF domain-containing protein n=1 Tax=Microbacterium luticocti TaxID=451764 RepID=UPI00041EE41B)

HSP 1 Score: 75.9 bits (185), Expect = 2.750e-14
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228
            NV RHA A  V VDVT+  G+ L+V+V+DDGVG+ PDA    G ANL  RA   GG++ + R + GGT + W+VP+
Sbjct:  485 NVARHAHADHVSVDVTVG-GSELTVTVVDDGVGIAPDAARTGGTANLAERAAGHGGTLTVARADGGGTRLCWRVPL 559          
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: A0A285R3D7_9ACTN (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A285R3D7_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 9.580e-14
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPVEG 234
            N  RHARAS V  DVT+  G  L+V+V DDGVGL P+     GLANL  RA  LGG+   R  ++GGT +VW+VP+ G
Sbjct:  496 NAARHARASTV--DVTVTAGEELTVTVSDDGVGL-PEGGRRSGLANLADRATALGGTFAARARQEGGTELVWRVPLPG 570          
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI001F564D64 (GAF domain-containing protein n=1 Tax=Kineococcus sp. TRM81007 TaxID=2925831 RepID=UPI001F564D64)

HSP 1 Score: 73.6 bits (179), Expect = 1.770e-13
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 NVGRHARASAVGVDVTI-AHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228
            NV RHARAS V V V++ A G  L + V DDGVG DPDA+PG G  N+  RAE+LGG+  +     GG  + W+VP+
Sbjct:  442 NVARHARASRVDVHVSVDATGRELLLRVSDDGVGPDPDASPGHGTRNMSARAERLGGNCSLGVRARGGAELRWRVPL 518          
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI001CD08A8D (GAF domain-containing sensor histidine kinase n=3 Tax=Nocardioides TaxID=1839 RepID=UPI001CD08A8D)

HSP 1 Score: 72.8 bits (177), Expect = 3.320e-13
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228
            NV RHA A A  +DV +A G  L + V DDGVGL PD     GL N RRRA+ LGG++E+ R+ + GT +VW+VP+
Sbjct:  457 NVARHALADAAEIDVVVA-GDRLELRVADDGVGL-PDEVSESGLRNARRRADDLGGTLEVSRVGERGTVLVWRVPL 530          
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: A0A101JUW4_9ACTN (ATPase n=4 Tax=Actinoplanes TaxID=1865 RepID=A0A101JUW4_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 4.560e-13
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228
            NV RHARA  V V V +A G SL + V DDGVG+DP    G G+ N+  RA  LGG+ E+    DGGT +VW+VP+
Sbjct:  494 NVARHARAQNVRVSVRVADG-SLHLQVRDDGVGIDPSLARG-GVVNMGERARDLGGAFEVGPAPDGGTLLVWRVPL 567          
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: A0A0Q5J214_9CELL (GAF domain-containing protein n=2 Tax=Cellulomonas TaxID=1707 RepID=A0A0Q5J214_9CELL)

HSP 1 Score: 72.0 bits (175), Expect = 6.170e-13
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228
            NV RHARA  V V V +  G +L V V DDGVG+  D     GLANL  RA + GGS+ +R L +GGTH+ W VP+
Sbjct:  437 NVARHARAHDVVVRVQV--GPNLVVEVQDDGVGIPADVARRSGLANLENRAARWGGSVAVRALPEGGTHLRWSVPL 510          
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI00144885FC (GAF domain-containing protein n=1 Tax=Amycolatopsis acididurans TaxID=2724524 RepID=UPI00144885FC)

HSP 1 Score: 71.6 bits (174), Expect = 8.430e-13
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 NVGRHARASAVGVDVTIAH-GASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPVEG 234
            NV RHA AS+  ++VT+   G  L++SV+DDGVGL  +   G GL NLRRRAE+  G++ +R    GGT + W   +EG
Sbjct:  431 NVARHADASSAAIEVTVDRSGRQLTLSVIDDGVGLPDELPGGAGLVNLRRRAERWHGTLSVRPRTVGGTKLQWTAALEG 509          
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI002013B3D0 (GAF domain-containing sensor histidine kinase n=3 Tax=Nocardioides TaxID=1839 RepID=UPI002013B3D0)

HSP 1 Score: 71.6 bits (174), Expect = 8.490e-13
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228
            NV RHA A +  VDVT+     L + V DDGVG+ PD  P  GL N RRRA+ LGGS+E+  + D GT +VW+VP+
Sbjct:  483 NVARHALADSAEVDVTVTAD-RLELRVADDGVGV-PDDAPQSGLRNARRRADDLGGSLEVSPVGDRGTVLVWRVPL 556          
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI000A684937 (alcohol dehydrogenase catalytic domain-containing protein n=1 Tax=Streptomyces griseus TaxID=1911 RepID=UPI000A684937)

HSP 1 Score: 70.9 bits (172), Expect = 1.070e-12
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 NVGRHARAS----AVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228
            NV RHARA     A+G D     G  + ++V+DDGVG+ PD     GL N+  RAEQLGGS+E+    DGGT +VW+VPV
Sbjct:  243 NVARHARAGRTAVALGTD-----GREVRLAVVDDGVGIPPDGRRS-GLRNMAERAEQLGGSLELTTPADGGTSLVWRVPV 316          
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI001643276A (GAF domain-containing sensor histidine kinase n=1 Tax=Nocardioides sp. zg-1228 TaxID=2763008 RepID=UPI001643276A)

HSP 1 Score: 71.2 bits (173), Expect = 1.160e-12
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPVE 231
            NV RHA A A  VDV +A G  L + V DDGVGL PD     GL N RRRA  LGG++E+ R+ + GT +VW+VP++
Sbjct:  452 NVARHALADAAEVDVVVA-GDRLELRVTDDGVGL-PDEMIESGLRNARRRAADLGGTLELSRVGERGTLLVWRVPLQ 526          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00041EE41B2.750e-1450.00GAF domain-containing protein n=1 Tax=Microbacteri... [more]
A0A285R3D7_9ACTN9.580e-1452.56Histidine kinase-, DNA gyrase B-, and HSP90-like A... [more]
UPI001F564D641.770e-1350.65GAF domain-containing protein n=1 Tax=Kineococcus ... [more]
UPI001CD08A8D3.320e-1351.32GAF domain-containing sensor histidine kinase n=3 ... [more]
A0A101JUW4_9ACTN4.560e-1351.32ATPase n=4 Tax=Actinoplanes TaxID=1865 RepID=A0A10... [more]
A0A0Q5J214_9CELL6.170e-1351.32GAF domain-containing protein n=2 Tax=Cellulomonas... [more]
UPI00144885FC8.430e-1346.84GAF domain-containing protein n=1 Tax=Amycolatopsi... [more]
UPI002013B3D08.490e-1351.32GAF domain-containing sensor histidine kinase n=3 ... [more]
UPI000A6849371.070e-1250.00alcohol dehydrogenase catalytic domain-containing ... [more]
UPI001643276A1.160e-1251.95GAF domain-containing sensor histidine kinase n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78914contigM-pyrifera_M_contig78914:742..978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.9
Seed ortholog evalue9.6e-12
Seed eggNOG ortholog1122239.AULS01000008_gene2422
KEGG koko:K20487
KEGG Pathwayko02020,ko02024,map02020,map02024
KEGG ModuleM00816
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase
EggNOG OGs2GIWI@201174,COG3850@1,COG3850@2
EC2.7.13.3
COG Functional cat.T
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02022
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.1466851-CDS-M-pyrifera_M_contig78914:741..9781622816692.1466851-CDS-M-pyrifera_M_contig78914:741..978Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78914 742..978 -
1692278122.8337588-CDS-M-pyrifera_M_contig78914:741..9781692278122.8337588-CDS-M-pyrifera_M_contig78914:741..978Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78914 742..978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78914.18536.1prot_M-pyrifera_M_contig78914.18536.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78914 742..978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78914.18536.1

>prot_M-pyrifera_M_contig78914.18536.1 ID=prot_M-pyrifera_M_contig78914.18536.1|Name=mRNA_M-pyrifera_M_contig78914.18536.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRR
AEQLGGSMEIRRLEDGGTHMVWKVPVEG*
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mRNA from alignment at M-pyrifera_M_contig78914:742..978-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78914.18536.1 ID=mRNA_M-pyrifera_M_contig78914.18536.1|Name=mRNA_M-pyrifera_M_contig78914.18536.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig78914:742..978- (Macrocystis pyrifera P11B4 male)
AACGTCGGCCGCCATGCCCGTGCCTCAGCGGTCGGCGTCGACGTCACCAT CGCACATGGCGCGTCGCTGTCGGTCAGCGTGCTCGACGACGGCGTCGGGC TCGATCCCGACGCAACGCCGGGTTTCGGGCTGGCCAATCTTCGCCGCCGA GCAGAACAGCTCGGCGGCTCGATGGAGATCCGACGACTGGAAGACGGCGG CACTCACATGGTGTGGAAGGTTCCCGTCGAGGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78914:742..978-

>mRNA_M-pyrifera_M_contig78914.18536.1 ID=mRNA_M-pyrifera_M_contig78914.18536.1|Name=mRNA_M-pyrifera_M_contig78914.18536.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig78914:742..978- (Macrocystis pyrifera P11B4 male)
AACGTCGGCCGCCATGCCCGTGCCTCAGCGGTCGGCGTCGACGTCACCAT
CGCACATGGCGCGTCGCTGTCGGTCAGCGTGCTCGACGACGGCGTCGGGC
TCGATCCCGACGCAACGCCGGGTTTCGGGCTGGCCAATCTTCGCCGCCGA
GCAGAACAGCTCGGCGGCTCGATGGAGATCCGACGACTGGAAGACGGCGG
CACTCACATGGTGTGGAAGGTTCCCGTCGAGGGCTGAAACGTCGGCCGCC
ATGCCCGTGCCTCAGCGGTCGGCGTCGACGTCACCATCGCACATGGCGCG
TCGCTGTCGGTCAGCGTGCTCGACGACGGCGTCGGGCTCGATCCCGACGC
AACGCCGGGTTTCGGGCTGGCCAATCTTCGCCGCCGAGCAGAACAGCTCG
GCGGCTCGATGGAGATCCGACGACTGGAAGACGGCGGCACTCACATGGTG
TGGAAGGTTCCCGTCGAGGGCTGA
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