mRNA_M-pyrifera_M_contig78914.18536.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI00041EE41B (GAF domain-containing protein n=1 Tax=Microbacterium luticocti TaxID=451764 RepID=UPI00041EE41B) HSP 1 Score: 75.9 bits (185), Expect = 2.750e-14 Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1 Query: 1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228 NV RHA A V VDVT+ G+ L+V+V+DDGVG+ PDA G ANL RA GG++ + R + GGT + W+VP+ Sbjct: 485 NVARHAHADHVSVDVTVG-GSELTVTVVDDGVGIAPDAARTGGTANLAERAAGHGGTLTVARADGGGTRLCWRVPL 559
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: A0A285R3D7_9ACTN (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A285R3D7_9ACTN) HSP 1 Score: 74.3 bits (181), Expect = 9.580e-14 Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1 Query: 1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPVEG 234 N RHARAS V DVT+ G L+V+V DDGVGL P+ GLANL RA LGG+ R ++GGT +VW+VP+ G Sbjct: 496 NAARHARASTV--DVTVTAGEELTVTVSDDGVGL-PEGGRRSGLANLADRATALGGTFAARARQEGGTELVWRVPLPG 570
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI001F564D64 (GAF domain-containing protein n=1 Tax=Kineococcus sp. TRM81007 TaxID=2925831 RepID=UPI001F564D64) HSP 1 Score: 73.6 bits (179), Expect = 1.770e-13 Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 1 NVGRHARASAVGVDVTI-AHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228 NV RHARAS V V V++ A G L + V DDGVG DPDA+PG G N+ RAE+LGG+ + GG + W+VP+ Sbjct: 442 NVARHARASRVDVHVSVDATGRELLLRVSDDGVGPDPDASPGHGTRNMSARAERLGGNCSLGVRARGGAELRWRVPL 518
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI001CD08A8D (GAF domain-containing sensor histidine kinase n=3 Tax=Nocardioides TaxID=1839 RepID=UPI001CD08A8D) HSP 1 Score: 72.8 bits (177), Expect = 3.320e-13 Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1 Query: 1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228 NV RHA A A +DV +A G L + V DDGVGL PD GL N RRRA+ LGG++E+ R+ + GT +VW+VP+ Sbjct: 457 NVARHALADAAEIDVVVA-GDRLELRVADDGVGL-PDEVSESGLRNARRRADDLGGTLEVSRVGERGTVLVWRVPL 530
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: A0A101JUW4_9ACTN (ATPase n=4 Tax=Actinoplanes TaxID=1865 RepID=A0A101JUW4_9ACTN) HSP 1 Score: 72.4 bits (176), Expect = 4.560e-13 Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228 NV RHARA V V V +A G SL + V DDGVG+DP G G+ N+ RA LGG+ E+ DGGT +VW+VP+ Sbjct: 494 NVARHARAQNVRVSVRVADG-SLHLQVRDDGVGIDPSLARG-GVVNMGERARDLGGAFEVGPAPDGGTLLVWRVPL 567
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: A0A0Q5J214_9CELL (GAF domain-containing protein n=2 Tax=Cellulomonas TaxID=1707 RepID=A0A0Q5J214_9CELL) HSP 1 Score: 72.0 bits (175), Expect = 6.170e-13 Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228 NV RHARA V V V + G +L V V DDGVG+ D GLANL RA + GGS+ +R L +GGTH+ W VP+ Sbjct: 437 NVARHARAHDVVVRVQV--GPNLVVEVQDDGVGIPADVARRSGLANLENRAARWGGSVAVRALPEGGTHLRWSVPL 510
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI00144885FC (GAF domain-containing protein n=1 Tax=Amycolatopsis acididurans TaxID=2724524 RepID=UPI00144885FC) HSP 1 Score: 71.6 bits (174), Expect = 8.430e-13 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 1 NVGRHARASAVGVDVTIAH-GASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPVEG 234 NV RHA AS+ ++VT+ G L++SV+DDGVGL + G GL NLRRRAE+ G++ +R GGT + W +EG Sbjct: 431 NVARHADASSAAIEVTVDRSGRQLTLSVIDDGVGLPDELPGGAGLVNLRRRAERWHGTLSVRPRTVGGTKLQWTAALEG 509
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI002013B3D0 (GAF domain-containing sensor histidine kinase n=3 Tax=Nocardioides TaxID=1839 RepID=UPI002013B3D0) HSP 1 Score: 71.6 bits (174), Expect = 8.490e-13 Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228 NV RHA A + VDVT+ L + V DDGVG+ PD P GL N RRRA+ LGGS+E+ + D GT +VW+VP+ Sbjct: 483 NVARHALADSAEVDVTVTAD-RLELRVADDGVGV-PDDAPQSGLRNARRRADDLGGSLEVSPVGDRGTVLVWRVPL 556
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI000A684937 (alcohol dehydrogenase catalytic domain-containing protein n=1 Tax=Streptomyces griseus TaxID=1911 RepID=UPI000A684937) HSP 1 Score: 70.9 bits (172), Expect = 1.070e-12 Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1 Query: 1 NVGRHARAS----AVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPV 228 NV RHARA A+G D G + ++V+DDGVG+ PD GL N+ RAEQLGGS+E+ DGGT +VW+VPV Sbjct: 243 NVARHARAGRTAVALGTD-----GREVRLAVVDDGVGIPPDGRRS-GLRNMAERAEQLGGSLELTTPADGGTSLVWRVPV 316
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Match: UPI001643276A (GAF domain-containing sensor histidine kinase n=1 Tax=Nocardioides sp. zg-1228 TaxID=2763008 RepID=UPI001643276A) HSP 1 Score: 71.2 bits (173), Expect = 1.160e-12 Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 1 NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRAEQLGGSMEIRRLEDGGTHMVWKVPVE 231 NV RHA A A VDV +A G L + V DDGVGL PD GL N RRRA LGG++E+ R+ + GT +VW+VP++ Sbjct: 452 NVARHALADAAEVDVVVA-GDRLELRVTDDGVGL-PDEMIESGLRNARRRAADLGGTLELSRVGERGTLLVWRVPLQ 526 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78914.18536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig78914.18536.1 >prot_M-pyrifera_M_contig78914.18536.1 ID=prot_M-pyrifera_M_contig78914.18536.1|Name=mRNA_M-pyrifera_M_contig78914.18536.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp NVGRHARASAVGVDVTIAHGASLSVSVLDDGVGLDPDATPGFGLANLRRRback to top mRNA from alignment at M-pyrifera_M_contig78914:742..978- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig78914.18536.1 ID=mRNA_M-pyrifera_M_contig78914.18536.1|Name=mRNA_M-pyrifera_M_contig78914.18536.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig78914:742..978- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig78914:742..978- >mRNA_M-pyrifera_M_contig78914.18536.1 ID=mRNA_M-pyrifera_M_contig78914.18536.1|Name=mRNA_M-pyrifera_M_contig78914.18536.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig78914:742..978- (Macrocystis pyrifera P11B4 male)back to top |