mRNA_M-pyrifera_M_contig76738.18086.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76738.18086.1
Unique NamemRNA_M-pyrifera_M_contig76738.18086.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76738.18086.1 vs. uniprot
Match: A0A2E7RKS9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E7RKS9_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 5.230e-5
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 PTGSQIVSASWDNTLRIWDADLGTELTLLGGRFGHKKRVAS 123
            P+G++IVS SWDNTLRIWDA+ G EL  L G   H++ V+S
Sbjct:    6 PSGTRIVSGSWDNTLRIWDAETGAELQTLRG---HEESVSS 43
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76738.18086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E7RKS9_9BACT5.230e-558.54Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76738contigM-pyrifera_M_contig76738:2..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.8959754-CDS-M-pyrifera_M_contig76738:1..4451622816666.8959754-CDS-M-pyrifera_M_contig76738:1..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76738 2..445 +
1692278107.75728-CDS-M-pyrifera_M_contig76738:1..4451692278107.75728-CDS-M-pyrifera_M_contig76738:1..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76738 2..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76738.18086.1prot_M-pyrifera_M_contig76738.18086.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76738 2..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76738.18086.1

>prot_M-pyrifera_M_contig76738.18086.1 ID=prot_M-pyrifera_M_contig76738.18086.1|Name=mRNA_M-pyrifera_M_contig76738.18086.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
PTGSQIVSASWDNTLRIWDADLGTELTLLGGRFGHKKRVASCAYSTDGSL
VISGAWDCSVKLWDVSTGECLKTLKGHIKPVNAVAFSEDAERAASASWDC
SIKIWDVYSGKCTATLTGHSQSIRSVTFAPNNRHLISTAADCSMRIWD
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mRNA from alignment at M-pyrifera_M_contig76738:2..445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76738.18086.1 ID=mRNA_M-pyrifera_M_contig76738.18086.1|Name=mRNA_M-pyrifera_M_contig76738.18086.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig76738:2..445+ (Macrocystis pyrifera P11B4 male)
CCCACTGGCAGCCAGATTGTGTCGGCCTCTTGGGACAACACCCTCCGCAT
TTGGGATGCCGACCTTGGCACGGAGCTTACTCTCCTCGGCGGCCGCTTTG
GCCACAAGAAGAGAGTCGCGTCTTGCGCTTACTCGACAGACGGTTCCCTC
GTCATCTCGGGCGCGTGGGACTGCTCTGTCAAGCTCTGGGATGTGAGCAC
CGGCGAGTGCCTCAAGACTCTGAAGGGCCACATCAAGCCAGTCAACGCAG
TTGCATTCTCTGAGGACGCTGAGCGTGCAGCCTCGGCGTCGTGGGACTGC
TCCATCAAGATCTGGGATGTCTACAGCGGCAAGTGCACAGCGACGCTCAC
CGGACACTCTCAGTCCATCCGCTCTGTCACTTTTGCGCCCAACAACCGCC
ATCTCATCTCCACGGCGGCAGACTGCTCCATGAGGATCTGGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76738:2..445+

>mRNA_M-pyrifera_M_contig76738.18086.1 ID=mRNA_M-pyrifera_M_contig76738.18086.1|Name=mRNA_M-pyrifera_M_contig76738.18086.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig76738:2..445+ (Macrocystis pyrifera P11B4 male)
CCCACTGGCAGCCAGATTGTGTCGGCCTCTTGGGACAACACCCTCCGCAT
TTGGGATGCCGACCTTGGCACGGAGCTTACTCTCCTCGGCGGCCGCTTTG
GCCACAAGAAGAGAGTCGCGTCTTGCGCTTACTCGACAGACGGTTCCCTC
GTCATCTCGGGCGCGTGGGACTGCTCTGTCAAGCTCTGGGATGTGAGCAC
CGGCGAGTGCCTCAAGACTCTGAAGGGCCACATCAAGCCAGTCAACGCAG
TTGCATTCTCTGAGGACGCTGAGCGTGCAGCCTCGGCGTCGTGGGACTGC
TCCATCAAGATCTGGGATGTCTACAGCGGCAAGTGCACAGCGACGCTCAC
CGGACACTCTCAGTCCATCCGCTCTGTCACTTTTGCGCCCAACAACCGCC
ATCTCATCTCCACGGCGGCAGACTGCTCCATGAGGATCTGGGACCCCACT
GGCAGCCAGATTGTGTCGGCCTCTTGGGACAACACCCTCCGCATTTGGGA
TGCCGACCTTGGCACGGAGCTTACTCTCCTCGGCGGCCGCTTTGGCCACA
AGAAGAGAGTCGCGTCTTGCGCTTACTCGACAGACGGTTCCCTCGTCATC
TCGGGCGCGTGGGACTGCTCTGTCAAGCTCTGGGATGTGAGCACCGGCGA
GTGCCTCAAGACTCTGAAGGGCCACATCAAGCCAGTCAACGCAGTTGCAT
TCTCTGAGGACGCTGAGCGTGCAGCCTCGGCGTCGTGGGACTGCTCCATC
AAGATCTGGGATGTCTACAGCGGCAAGTGCACAGCGACGCTCACCGGACA
CTCTCAGTCCATCCGCTCTGTCACTTTTGCGCCCAACAACCGCCATCTCA
TCTCCACGGCGGCAGACTGCTCCATGAGGATCTGGGAC
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