mRNA_M-pyrifera_M_contig76657.18067.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: UPI0019394E4E (elongator complex protein 4-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019394E4E) HSP 1 Score: 60.1 bits (144), Expect = 7.850e-8 Identity = 33/102 (32.35%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 16 HGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYES 321 +G + S+G+P+LD ++GGG+P G V +LE D ++ + + + A+ + H V++VG ND+ F + LP+ + E D+ A GD+K A++Y++ Sbjct: 27 NGQLLCSTGIPSLDGVIGGGIPVGTVFLLEEDHNHQYSDVLTRYFLAEAVVSSHEVFIVG--NDDESSFTSYLPKPVMPDE-DSHTTEANAGDMKIAWRYQN 125
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A6A0GRL3_HYAAZ (Elongator complex protein 4 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GRL3_HYAAZ) HSP 1 Score: 58.5 bits (140), Expect = 2.760e-7 Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 1 Query: 28 MVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYES 321 +VSSG+P+LD ILGGG+P G + +LE DE V+A+ + + + +GH V V +D V+ +SLP + E D+ ++ E +K A++Y++ Sbjct: 40 LVSSGIPSLDGILGGGIPVGSLLLLEEDESNVYAQYFMKCFLAEGVTSGHEVMVASVDSDPVK-LISSLPSPVPNKE-DSREENDESESMKIAWRYQN 135
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A0M4EFS6_DROBS (Elongator complex protein 4 (Fragment) n=2 Tax=Drosophila busckii TaxID=30019 RepID=A0A0M4EFS6_DROBS) HSP 1 Score: 57.8 bits (138), Expect = 5.270e-7 Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 1 Query: 28 MVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASE----RDAADDAAEFGDLKGAFQY 315 + SSG P+LD ILGGGLP G +C++E D HAK +A + + + + H +++ G +D E LP+ +S E + A++ A+ L+ AF+Y Sbjct: 26 ITSSGNPSLDVILGGGLPIGSICLIEEDRFMTHAKVLAKYFLAEGVLSKHEIFL-GSLDDLPREMLRRLPQPLSEEEVELEQQASEQPADKNGLRIAFRY 124
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: UPI0018CFCB74 (putative elongator complex protein 4 n=2 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CFCB74) HSP 1 Score: 57.4 bits (137), Expect = 7.330e-7 Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = 1 Query: 19 GLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASE--RDAADD 276 G + SSG P+LD ILGGGLP G +C++E D+ H+K +A + + +A+ H +++ G +D+ E + LP+ ++ E ++ ADD Sbjct: 24 GQVITSSGNPSLDVILGGGLPIGSICLIEEDKYVTHSKVLAKYFLAEGVASFHCLFL-GSLDDDPVELLSKLPKPLNEEEIEKELADD 110
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: UPI00200D6E9C (elongator complex protein 4 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200D6E9C) HSP 1 Score: 57.0 bits (136), Expect = 9.350e-7 Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 16 HGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAA-EFGDLKGAFQYE 318 + L VSSG+P+LD ++GGGLP G V V+E D G +++ ++ + S + H +++ ++D+ EF LP+ +A D + AA + +K A++YE Sbjct: 21 NNLPYVSSGIPSLDHVIGGGLPTGAVFVVEEDVLGNYSRVLSKYFLSEGVVCKHDLFIAS-ADDDPREFVKELPQPCTAPPEDEINIAASDVNKMKIAWRYE 121
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A7F5R8L6_AGRPL (Elongator complex protein 4 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8L6_AGRPL) HSP 1 Score: 56.2 bits (134), Expect = 1.720e-6 Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1 Query: 19 GLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYESYLK 330 G +VSSG+P++D +LGGGLP G V ++E D GG +++ M + + + H V+V G + + LP VIS+ D + + AF+Y+ K Sbjct: 27 GQLLVSSGIPSVDELLGGGLPVGSVVLIEEDSGGSYSRVMLRYFLAEGVVHKHAVFV-GSQDYNPGKMTKELPAVISSDPEPELLDEHKTDKMTIAFRYQKLPK 129
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: E1Z243_CHLVA (Elongator complex protein 4 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z243_CHLVA) HSP 1 Score: 56.2 bits (134), Expect = 1.880e-6 Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 1 Query: 4 RPWLHGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISAS--ERDAADDAAEFGD------LKGAFQYESYLKGG 336 RP LHG +++SSG P LDR+LGGGLP G + +L D H T+ + + + A G + + E LP+ I A R A D E G L+ A+QY Y++GG Sbjct: 20 RPGLHGQTLLSSGHPDLDRLLGGGLPLGSLLLLLEDGWSAHHATLLRYFLAESAACGQTLLLAAAPAPE-----GGLPKFIPAELKGRAAEKDEDEGGKEQEQYKLRIAWQYRRYIQGG 133
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A8K0C8H7_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0C8H7_9COLE) HSP 1 Score: 55.8 bits (133), Expect = 2.350e-6 Identity = 29/101 (28.71%), Postives = 54/101 (53.47%), Query Frame = 1 Query: 19 GLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYES 321 G ++SSG+P+LD +LGGGLP G V ++E D+ G ++K M + + + +GH ++ + + LP V + +A + + AF+Y++ Sbjct: 26 GQLLISSGIPSLDELLGGGLPVGTVVLIEEDQYGSYSKIMLKYFLAEGIVSGHSTFIASQDTS-TDNIIRELPAVSGSDPEPEQANAGDSAKMTIAFRYQN 125
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A0L0T605_ALLM3 (Elongator complex protein 4 n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T605_ALLM3) HSP 1 Score: 55.8 bits (133), Expect = 2.480e-6 Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 1 Query: 16 HGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYA-SVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYESYLKGGGDVSGSSEELRMGRGSGGRG-------YCAPVDLSRRL 429 +G +VS+G+ +LD +LGGG P G V VL+ D G +A T+A Y+ + AL GH V +V ++D+ A P+ + A D + +K A++Y+ +L GD + LR + GGR YC DL++R+ Sbjct: 62 NGQVLVSTGIASLDDLLGGGQPLGTVLVLDEDVGTGYA-TLAMQYSLAQALVHGHHV-LVASADDDPATLVAGCPQPVGAEGSAQGSDKGDDEAMKIAWRYQ-HLPKYGDAPDAGRSLR--KAMGGRAATSEVPAYCGVFDLTKRM 202
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A2P6U294_CHLSO (Elongator complex protein 4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U294_CHLSO) HSP 1 Score: 55.5 bits (132), Expect = 2.630e-6 Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1 Query: 4 RPWLHGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDE--VEEFAASLPRVISAS-ERDAADDAAEFGDLKGAFQYESYLK 330 RP LHG +++SSG P LDR+LGGGLP G + +L D VH T+ + + A G + + + +F + + SA + D + EF L+ A+QY Y+K Sbjct: 22 RPGLHGQTLLSSGHPDLDRLLGGGLPLGSLLLLLEDGWSVHHATLLRYFLAEGAACGQSLMLAAAPPPAGGLAKFVPAQAKGRSADKDEDEGKEQEEF-KLRIAWQYRRYIK 132 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig76657.18067.1 >prot_M-pyrifera_M_contig76657.18067.1 ID=prot_M-pyrifera_M_contig76657.18067.1|Name=mRNA_M-pyrifera_M_contig76657.18067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp MRPWLHGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYback to top mRNA from alignment at M-pyrifera_M_contig76657:569..997+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig76657.18067.1 ID=mRNA_M-pyrifera_M_contig76657.18067.1|Name=mRNA_M-pyrifera_M_contig76657.18067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig76657:569..997+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig76657:569..997+ >mRNA_M-pyrifera_M_contig76657.18067.1 ID=mRNA_M-pyrifera_M_contig76657.18067.1|Name=mRNA_M-pyrifera_M_contig76657.18067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig76657:569..997+ (Macrocystis pyrifera P11B4 male)back to top |