mRNA_M-pyrifera_M_contig76657.18067.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76657.18067.1
Unique NamemRNA_M-pyrifera_M_contig76657.18067.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: UPI0019394E4E (elongator complex protein 4-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019394E4E)

HSP 1 Score: 60.1 bits (144), Expect = 7.850e-8
Identity = 33/102 (32.35%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   16 HGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYES 321
            +G  + S+G+P+LD ++GGG+P G V +LE D    ++  +   + + A+ + H V++VG  ND+   F + LP+ +   E D+    A  GD+K A++Y++
Sbjct:   27 NGQLLCSTGIPSLDGVIGGGIPVGTVFLLEEDHNHQYSDVLTRYFLAEAVVSSHEVFIVG--NDDESSFTSYLPKPVMPDE-DSHTTEANAGDMKIAWRYQN 125          
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A6A0GRL3_HYAAZ (Elongator complex protein 4 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GRL3_HYAAZ)

HSP 1 Score: 58.5 bits (140), Expect = 2.760e-7
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   28 MVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYES 321
            +VSSG+P+LD ILGGG+P G + +LE DE  V+A+     + +  + +GH V V    +D V+   +SLP  +   E D+ ++  E   +K A++Y++
Sbjct:   40 LVSSGIPSLDGILGGGIPVGSLLLLEEDESNVYAQYFMKCFLAEGVTSGHEVMVASVDSDPVK-LISSLPSPVPNKE-DSREENDESESMKIAWRYQN 135          
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A0M4EFS6_DROBS (Elongator complex protein 4 (Fragment) n=2 Tax=Drosophila busckii TaxID=30019 RepID=A0A0M4EFS6_DROBS)

HSP 1 Score: 57.8 bits (138), Expect = 5.270e-7
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   28 MVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASE----RDAADDAAEFGDLKGAFQY 315
            + SSG P+LD ILGGGLP G +C++E D    HAK +A  + +  + + H +++ G  +D   E    LP+ +S  E    + A++  A+   L+ AF+Y
Sbjct:   26 ITSSGNPSLDVILGGGLPIGSICLIEEDRFMTHAKVLAKYFLAEGVLSKHEIFL-GSLDDLPREMLRRLPQPLSEEEVELEQQASEQPADKNGLRIAFRY 124          
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: UPI0018CFCB74 (putative elongator complex protein 4 n=2 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CFCB74)

HSP 1 Score: 57.4 bits (137), Expect = 7.330e-7
Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   19 GLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASE--RDAADD 276
            G  + SSG P+LD ILGGGLP G +C++E D+   H+K +A  + +  +A+ H +++ G  +D+  E  + LP+ ++  E  ++ ADD
Sbjct:   24 GQVITSSGNPSLDVILGGGLPIGSICLIEEDKYVTHSKVLAKYFLAEGVASFHCLFL-GSLDDDPVELLSKLPKPLNEEEIEKELADD 110          
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: UPI00200D6E9C (elongator complex protein 4 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200D6E9C)

HSP 1 Score: 57.0 bits (136), Expect = 9.350e-7
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   16 HGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAA-EFGDLKGAFQYE 318
            + L  VSSG+P+LD ++GGGLP G V V+E D  G +++ ++  + S  +   H +++   ++D+  EF   LP+  +A   D  + AA +   +K A++YE
Sbjct:   21 NNLPYVSSGIPSLDHVIGGGLPTGAVFVVEEDVLGNYSRVLSKYFLSEGVVCKHDLFIAS-ADDDPREFVKELPQPCTAPPEDEINIAASDVNKMKIAWRYE 121          
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A7F5R8L6_AGRPL (Elongator complex protein 4 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8L6_AGRPL)

HSP 1 Score: 56.2 bits (134), Expect = 1.720e-6
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1
Query:   19 GLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYESYLK 330
            G  +VSSG+P++D +LGGGLP G V ++E D GG +++ M   + +  +   H V+V G  +    +    LP VIS+       D  +   +  AF+Y+   K
Sbjct:   27 GQLLVSSGIPSVDELLGGGLPVGSVVLIEEDSGGSYSRVMLRYFLAEGVVHKHAVFV-GSQDYNPGKMTKELPAVISSDPEPELLDEHKTDKMTIAFRYQKLPK 129          
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: E1Z243_CHLVA (Elongator complex protein 4 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z243_CHLVA)

HSP 1 Score: 56.2 bits (134), Expect = 1.880e-6
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 1
Query:    4 RPWLHGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISAS--ERDAADDAAEFGD------LKGAFQYESYLKGG 336
            RP LHG +++SSG P LDR+LGGGLP G + +L  D    H  T+   + + + A G  + +      E       LP+ I A    R A  D  E G       L+ A+QY  Y++GG
Sbjct:   20 RPGLHGQTLLSSGHPDLDRLLGGGLPLGSLLLLLEDGWSAHHATLLRYFLAESAACGQTLLLAAAPAPE-----GGLPKFIPAELKGRAAEKDEDEGGKEQEQYKLRIAWQYRRYIQGG 133          
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A8K0C8H7_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0C8H7_9COLE)

HSP 1 Score: 55.8 bits (133), Expect = 2.350e-6
Identity = 29/101 (28.71%), Postives = 54/101 (53.47%), Query Frame = 1
Query:   19 GLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYES 321
            G  ++SSG+P+LD +LGGGLP G V ++E D+ G ++K M   + +  + +GH  ++  +     +     LP V  +       +A +   +  AF+Y++
Sbjct:   26 GQLLISSGIPSLDELLGGGLPVGTVVLIEEDQYGSYSKIMLKYFLAEGIVSGHSTFIASQDTS-TDNIIRELPAVSGSDPEPEQANAGDSAKMTIAFRYQN 125          
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A0L0T605_ALLM3 (Elongator complex protein 4 n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T605_ALLM3)

HSP 1 Score: 55.8 bits (133), Expect = 2.480e-6
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   16 HGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYA-SVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLKGAFQYESYLKGGGDVSGSSEELRMGRGSGGRG-------YCAPVDLSRRL 429
            +G  +VS+G+ +LD +LGGG P G V VL+ D G  +A T+A  Y+ + AL  GH V +V  ++D+     A  P+ + A       D  +   +K A++Y+ +L   GD   +   LR  +  GGR        YC   DL++R+
Sbjct:   62 NGQVLVSTGIASLDDLLGGGQPLGTVLVLDEDVGTGYA-TLAMQYSLAQALVHGHHV-LVASADDDPATLVAGCPQPVGAEGSAQGSDKGDDEAMKIAWRYQ-HLPKYGDAPDAGRSLR--KAMGGRAATSEVPAYCGVFDLTKRM 202          
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Match: A0A2P6U294_CHLSO (Elongator complex protein 4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U294_CHLSO)

HSP 1 Score: 55.5 bits (132), Expect = 2.630e-6
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    4 RPWLHGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTYASVALAAGHGVWVVGKSNDE--VEEFAASLPRVISAS-ERDAADDAAEFGDLKGAFQYESYLK 330
            RP LHG +++SSG P LDR+LGGGLP G + +L  D   VH  T+   + +   A G  + +         + +F  +  +  SA  + D   +  EF  L+ A+QY  Y+K
Sbjct:   22 RPGLHGQTLLSSGHPDLDRLLGGGLPLGSLLLLLEDGWSVHHATLLRYFLAEGAACGQSLMLAAAPPPAGGLAKFVPAQAKGRSADKDEDEGKEQEEF-KLRIAWQYRRYIK 132          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76657.18067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019394E4E7.850e-832.35elongator complex protein 4-like n=1 Tax=Styela cl... [more]
A0A6A0GRL3_HYAAZ2.760e-735.71Elongator complex protein 4 n=1 Tax=Hyalella aztec... [more]
A0A0M4EFS6_DROBS5.270e-735.00Elongator complex protein 4 (Fragment) n=2 Tax=Dro... [more]
UPI0018CFCB747.330e-736.36putative elongator complex protein 4 n=2 Tax=Teleo... [more]
UPI00200D6E9C9.350e-733.33elongator complex protein 4 n=1 Tax=Leguminivora g... [more]
A0A7F5R8L6_AGRPL1.720e-632.69Elongator complex protein 4 n=1 Tax=Agrilus planip... [more]
E1Z243_CHLVA1.880e-635.29Elongator complex protein 4 n=1 Tax=Chlorella vari... [more]
A0A8K0C8H7_9COLE2.350e-628.71Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A0L0T605_ALLM32.480e-632.88Elongator complex protein 4 n=1 Tax=Allomyces macr... [more]
A0A2P6U294_CHLSO2.630e-633.93Elongator complex protein 4 n=1 Tax=Chlorella soro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76657contigM-pyrifera_M_contig76657:569..997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog296587.XP_002505515.1
KEGG koko:K11375
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000993,GO:0001098,GO:0001099,GO:0001101,GO:0001932,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006325,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0008284,GO:0008607,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009744,GO:0009889,GO:0009892,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010928,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019887,GO:0019899,GO:0023051,GO:0030234,GO:0031248,GO:0031323,GO:0031326,GO:0031399,GO:0031537,GO:0031538,GO:0031974,GO:0031981,GO:0032268,GO:0032774,GO:0032991,GO:0033588,GO:0033993,GO:0034285,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042127,GO:0042221,GO:0042325,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043549,GO:0043609,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045859,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048831,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051239,GO:0051246,GO:0051252,GO:0051276,GO:0051338,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0070887,GO:0071310,GO:0071322,GO:0071324,GO:0071329,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0097659,GO:0098772,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1902493,GO:1902494,GO:1903506,GO:1990234,GO:2000024,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.PAXNEB protein
EggNOG OGs34IDM@3041,37QR4@33090,KOG3949@1,KOG3949@2759
COG Functional cat.BK
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03036
Exons1
Model size429
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.0023134-CDS-M-pyrifera_M_contig76657:568..9971622816666.0023134-CDS-M-pyrifera_M_contig76657:568..997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76657 569..997 +
1692278107.2342758-CDS-M-pyrifera_M_contig76657:568..9971692278107.2342758-CDS-M-pyrifera_M_contig76657:568..997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76657 569..997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76657.18067.1prot_M-pyrifera_M_contig76657.18067.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76657 569..997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76657.18067.1

>prot_M-pyrifera_M_contig76657.18067.1 ID=prot_M-pyrifera_M_contig76657.18067.1|Name=mRNA_M-pyrifera_M_contig76657.18067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MRPWLHGLSMVSSGMPTLDRILGGGLPCGDVCVLEMDEGGVHAKTMASTY
ASVALAAGHGVWVVGKSNDEVEEFAASLPRVISASERDAADDAAEFGDLK
GAFQYESYLKGGGDVSGSSEELRMGRGSGGRGYCAPVDLSRRL
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mRNA from alignment at M-pyrifera_M_contig76657:569..997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76657.18067.1 ID=mRNA_M-pyrifera_M_contig76657.18067.1|Name=mRNA_M-pyrifera_M_contig76657.18067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig76657:569..997+ (Macrocystis pyrifera P11B4 male)
ATGCGACCATGGCTGCATGGGTTGTCAATGGTTAGTAGTGGAATGCCTAC TTTGGATCGTATTCTAGGTGGTGGATTACCATGTGGTGATGTTTGTGTAC TGGAAATGGACGAAGGCGGTGTTCATGCAAAAACCATGGCGTCCACGTAC GCGAGTGTAGCATTGGCTGCTGGTCATGGAGTATGGGTGGTTGGGAAAAG CAATGATGAAGTGGAGGAGTTTGCAGCATCGCTTCCAAGGGTAATCAGCG CTTCGGAACGCGATGCAGCGGACGACGCCGCTGAATTTGGGGATTTGAAG GGTGCCTTTCAATACGAATCATATCTCAAAGGTGGTGGTGATGTGAGTGG GTCTTCGGAAGAGCTGAGGATGGGTCGTGGGAGTGGTGGGAGAGGGTATT GTGCTCCAGTGGACCTTTCTCGGCGTTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76657:569..997+

>mRNA_M-pyrifera_M_contig76657.18067.1 ID=mRNA_M-pyrifera_M_contig76657.18067.1|Name=mRNA_M-pyrifera_M_contig76657.18067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig76657:569..997+ (Macrocystis pyrifera P11B4 male)
ATGCGACCATGGCTGCATGGGTTGTCAATGGTTAGTAGTGGAATGCCTAC
TTTGGATCGTATTCTAGGTGGTGGATTACCATGTGGTGATGTTTGTGTAC
TGGAAATGGACGAAGGCGGTGTTCATGCAAAAACCATGGCGTCCACGTAC
GCGAGTGTAGCATTGGCTGCTGGTCATGGAGTATGGGTGGTTGGGAAAAG
CAATGATGAAGTGGAGGAGTTTGCAGCATCGCTTCCAAGGGTAATCAGCG
CTTCGGAACGCGATGCAGCGGACGACGCCGCTGAATTTGGGGATTTGAAG
GGTGCCTTTCAATACGAATCATATCTCAAAGGTGGTGGTGATGTGAGTGG
GTCTTCGGAAGAGCTGAGGATGGGTCGTGGGAGTGGTGGGAGAGGGTATT
GTGCTCCAGTGGACCTTTCTCGGCGTTTGATGCGACCATGGCTGCATGGG
TTGTCAATGGTTAGTAGTGGAATGCCTACTTTGGATCGTATTCTAGGTGG
TGGATTACCATGTGGTGATGTTTGTGTACTGGAAATGGACGAAGGCGGTG
TTCATGCAAAAACCATGGCGTCCACGTACGCGAGTGTAGCATTGGCTGCT
GGTCATGGAGTATGGGTGGTTGGGAAAAGCAATGATGAAGTGGAGGAGTT
TGCAGCATCGCTTCCAAGGGTAATCAGCGCTTCGGAACGCGATGCAGCGG
ACGACGCCGCTGAATTTGGGGATTTGAAGGGTGCCTTTCAATACGAATCA
TATCTCAAAGGTGGTGGTGATGTGAGTGGGTCTTCGGAAGAGCTGAGGAT
GGGTCGTGGGAGTGGTGGGAGAGGGTATTGTGCTCCAGTGGACCTTTCTC
GGCGTTTG
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