mRNA_M-pyrifera_M_contig76651.18065.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76651.18065.1
Unique NamemRNA_M-pyrifera_M_contig76651.18065.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76651.18065.1 vs. uniprot
Match: A0A356X295_9BACT (Phage_rep_O domain-containing protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A356X295_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 5.590e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 MSLKSFEVAFTRIPNIIIDKYLPELQGSEMSVLTVIFRKTIGFNKEKDRIALSTFEKMSG 180
            MS K     FT  PN  IDK +P + G+   VLTVI RKTIGF+K+ D+IALS FE ++G
Sbjct:    1 MSNKEIGYPFTAYPNYSIDKIMPVIDGNTFKVLTVIVRKTIGFHKKHDKIALSQFEGLTG 60
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BLAST of mRNA_M-pyrifera_M_contig76651.18065.1 vs. uniprot
Match: A0A2D9FRP3_9BACT (Phage_rep_O domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FRP3_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 9.900e-10
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   28 FTRIPNIIIDKYLPELQGSEMSVLTVIFRKTIGFNKEKDRIALSTFEKMSGQA 186
            +T++PN I D+   E+  SE+S+L +I RKT GF+K KDRIALSTFEK +G+A
Sbjct:    8 YTQMPNKIFDELQAEIGDSELSLLMIIGRKTCGFHKSKDRIALSTFEKFTGKA 60
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BLAST of mRNA_M-pyrifera_M_contig76651.18065.1 vs. uniprot
Match: A0A2A2GA84_9BACT (Phage_rep_O domain-containing protein n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2GA84_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.250e-6
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   19 EVAFTRIPNIIIDKYLPELQGSEMSVLTVIFRKTIGFNKEKDRIALSTFEKMSGQA 186
            E+ +T++PN II+  + EL+G E+ V   I RKT GF+K+ D IALS    ++G A
Sbjct:    7 EIPYTKVPNFIIEDLMAELRGGELKVAIAICRKTFGFHKKTDGIALSQIMDLTGLA 62
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BLAST of mRNA_M-pyrifera_M_contig76651.18065.1 vs. uniprot
Match: A0A1E7HXY2_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio sp. S3730MH75 TaxID=1869297 RepID=A0A1E7HXY2_9DELT)

HSP 1 Score: 51.2 bits (121), Expect = 5.240e-6
Identity = 20/51 (39.22%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   28 FTRIPNIIIDKYLPELQGSEMSVLTVIFRKTIGFNKEKDRIALSTFEKMSG 180
            FT++PN+++D  + E+  +E+ ++    RKT G+ K +DRI+ S FEK++G
Sbjct:    8 FTQVPNVLLDNQIQEMSKAELKIVLATCRKTFGWQKGRDRISYSQFEKLTG 58
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BLAST of mRNA_M-pyrifera_M_contig76651.18065.1 vs. uniprot
Match: A0A0F9IXP4_9ZZZZ (Phage_rep_O domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9IXP4_9ZZZZ)

HSP 1 Score: 50.1 bits (118), Expect = 1.570e-5
Identity = 18/42 (42.86%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   28 FTRIPNIIIDKYLPELQGSEMSVLTVIFRKTIGFNKEKDRIA 153
            +T+ PN+IIDKY+ ++ G+E+ V+++I R+T+G++++KDR++
Sbjct:    7 YTQYPNVIIDKYMRDMTGAEIKVISLIVRQTMGWHRDKDRLS 48
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BLAST of mRNA_M-pyrifera_M_contig76651.18065.1 vs. uniprot
Match: A0A2D8CLX4_9BACT (Phage_rep_O domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D8CLX4_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 4.140e-5
Identity = 22/58 (37.93%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    7 LKSFEVAFTRIPNIIIDKYLPELQGSEMSVLTVIFRKTIGFNKEKDRIALSTFEKMSG 180
            +K  E  FT+ PN+++D  +P +  S   +L+VI RK+ G+ K+ D I+++ FE  SG
Sbjct:    1 MKKSEFYFTKFPNVLLDDVMPMVGPSAFKILSVIIRKSKGYQKKGDMISITQFEDNSG 58
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76651.18065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A356X295_9BACT5.590e-1053.33Phage_rep_O domain-containing protein n=2 Tax=Baln... [more]
A0A2D9FRP3_9BACT9.900e-1056.60Phage_rep_O domain-containing protein n=1 Tax=Baln... [more]
A0A2A2GA84_9BACT1.250e-644.64Phage_rep_O domain-containing protein n=1 Tax=Alii... [more]
A0A1E7HXY2_9DELT5.240e-639.22Uncharacterized protein n=1 Tax=Desulfovibrio sp. ... [more]
A0A0F9IXP4_9ZZZZ1.570e-542.86Phage_rep_O domain-containing protein n=1 Tax=mari... [more]
A0A2D8CLX4_9BACT4.140e-537.93Phage_rep_O domain-containing protein n=1 Tax=Baln... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76651contigM-pyrifera_M_contig76651:839..1024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.925346-CDS-M-pyrifera_M_contig76651:838..10241622816665.925346-CDS-M-pyrifera_M_contig76651:838..1024Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76651 839..1024 +
1692278107.2022774-CDS-M-pyrifera_M_contig76651:838..10241692278107.2022774-CDS-M-pyrifera_M_contig76651:838..1024Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76651 839..1024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76651.18065.1prot_M-pyrifera_M_contig76651.18065.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76651 839..1024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76651.18065.1

>prot_M-pyrifera_M_contig76651.18065.1 ID=prot_M-pyrifera_M_contig76651.18065.1|Name=mRNA_M-pyrifera_M_contig76651.18065.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MSLKSFEVAFTRIPNIIIDKYLPELQGSEMSVLTVIFRKTIGFNKEKDRI
ALSTFEKMSGQA
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mRNA from alignment at M-pyrifera_M_contig76651:839..1024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76651.18065.1 ID=mRNA_M-pyrifera_M_contig76651.18065.1|Name=mRNA_M-pyrifera_M_contig76651.18065.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig76651:839..1024+ (Macrocystis pyrifera P11B4 male)
ATGAGTTTAAAGTCATTTGAAGTTGCATTTACAAGAATTCCGAATATTAT
TATTGATAAATATTTACCAGAACTACAGGGAAGTGAGATGTCAGTTTTGA
CAGTAATTTTTAGAAAGACAATAGGCTTTAACAAAGAAAAAGATAGAATT
GCTCTTTCTACATTCGAAAAAATGTCTGGTCAGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76651:839..1024+

>mRNA_M-pyrifera_M_contig76651.18065.1 ID=mRNA_M-pyrifera_M_contig76651.18065.1|Name=mRNA_M-pyrifera_M_contig76651.18065.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig76651:839..1024+ (Macrocystis pyrifera P11B4 male)
ATGAGTTTAAAGTCATTTGAAGTTGCATTTACAAGAATTCCGAATATTAT
TATTGATAAATATTTACCAGAACTACAGGGAAGTGAGATGTCAGTTTTGA
CAGTAATTTTTAGAAAGACAATAGGCTTTAACAAAGAAAAAGATAGAATT
GCTCTTTCTACATTCGAAAAAATGTCTGGTCAGGCTATGAGTTTAAAGTC
ATTTGAAGTTGCATTTACAAGAATTCCGAATATTATTATTGATAAATATT
TACCAGAACTACAGGGAAGTGAGATGTCAGTTTTGACAGTAATTTTTAGA
AAGACAATAGGCTTTAACAAAGAAAAAGATAGAATTGCTCTTTCTACATT
CGAAAAAATGTCTGGTCAGGCT
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