mRNA_M-pyrifera_M_contig76528.18038.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76528.18038.1
Unique NamemRNA_M-pyrifera_M_contig76528.18038.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76528.18038.1 vs. uniprot
Match: A0A6G6XND5_9VIRU (Putative major capsid protein n=1 Tax=Dishui Lake virophage 2 TaxID=2704064 RepID=A0A6G6XND5_9VIRU)

HSP 1 Score: 68.6 bits (166), Expect = 6.790e-10
Identity = 68/213 (31.92%), Postives = 98/213 (46.01%), Query Frame = 1 
Query:   70 AIKRGARSITYQVITPDGSNNSTNNANFTINVPSDALVNRRIAVRLVNPTITFSVAADAANNAGLRVLNPD-------CDAPQSFPLNRMIQTASAQINNQTISSQIHDNLDALIRTCDDHELFSGVNSASLCQLDNCQD-YDGVYGASYNPLSLGDNY-----QSGRGAFPLQVNSNE---NLDTAAAATASVTCPEW--------IEPLLL 636
            A+K GA   TYQ      ++NS     F I VPS+ +V  R    ++   +TF++ A +   AG +V   +        DA Q+FPLN +  TA+AQINN T++    D L AL+R  D  EL+   NS +    D     Y    G++ NPL   +N      Q  RGAFP+ V        + T A+  ++     W         EPL+L
Sbjct:   24 AVKSGASQTTYQRFPSTSASNSA--LIFNIQVPSENVVIDR--AMMLTSGLTFTIYAGSQTVAGNQVPIGEKAFDYGLTDALQAFPLNSLFTTATAQINNTTVTMNTQDVLPALLRMTDSRELYR-YNSMTPSFPDCAYGAYSAGVGSNNNPLGAYENASYDIDQVPRGAFPVSVEIRHFIAGVYTDASPVSTAVTDTWEIVVSTVVTEPLIL 231
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76528.18038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6G6XND5_9VIRU6.790e-1031.92Putative major capsid protein n=1 Tax=Dishui Lake ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76528contigM-pyrifera_M_contig76528:310..957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size648
Cds size648
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.5657096-CDS-M-pyrifera_M_contig76528:309..9571622816664.5657096-CDS-M-pyrifera_M_contig76528:309..957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76528 310..957 +
1692278106.4720018-CDS-M-pyrifera_M_contig76528:309..9571692278106.4720018-CDS-M-pyrifera_M_contig76528:309..957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76528 310..957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76528.18038.1prot_M-pyrifera_M_contig76528.18038.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76528 310..957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76528.18038.1

>prot_M-pyrifera_M_contig76528.18038.1 ID=prot_M-pyrifera_M_contig76528.18038.1|Name=mRNA_M-pyrifera_M_contig76528.18038.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=216bp
MSELKLDKVRVLDSRIAPNKGTIAIKRGARSITYQVITPDGSNNSTNNAN
FTINVPSDALVNRRIAVRLVNPTITFSVAADAANNAGLRVLNPDCDAPQS
FPLNRMIQTASAQINNQTISSQIHDNLDALIRTCDDHELFSGVNSASLCQ
LDNCQDYDGVYGASYNPLSLGDNYQSGRGAFPLQVNSNENLDTAAAATAS
VTCPEWIEPLLLPSLW
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mRNA from alignment at M-pyrifera_M_contig76528:310..957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76528.18038.1 ID=mRNA_M-pyrifera_M_contig76528.18038.1|Name=mRNA_M-pyrifera_M_contig76528.18038.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig76528:310..957+ (Macrocystis pyrifera P11B4 male)
ATGTCAGAACTAAAGCTAGATAAAGTCAGAGTGCTTGACAGCCGCATCGC
CCCTAACAAGGGCACAATCGCTATTAAGCGTGGTGCACGATCAATCACTT
ACCAAGTCATCACACCAGATGGCTCCAACAACAGCACCAACAATGCCAAC
TTCACCATCAATGTTCCATCAGACGCCCTTGTCAACCGCCGTATCGCTGT
TAGGTTGGTAAATCCTACCATTACCTTCTCTGTTGCTGCAGATGCTGCTA
ATAACGCTGGTCTCAGGGTACTCAACCCTGACTGCGACGCTCCACAATCC
TTCCCTCTCAACCGCATGATCCAGACTGCCTCTGCACAGATCAACAACCA
AACCATCTCCAGCCAAATCCATGACAACTTGGACGCTCTTATTCGCACTT
GTGATGATCATGAGCTCTTTTCTGGTGTCAACTCTGCCTCTCTCTGTCAG
CTAGACAATTGCCAAGACTACGATGGGGTGTATGGCGCGTCCTACAACCC
TCTCTCCCTTGGTGACAACTACCAGAGTGGTCGTGGTGCTTTCCCTCTTC
AAGTCAACTCCAATGAAAACCTTGACACCGCCGCAGCAGCAACTGCCTCT
GTCACTTGCCCCGAGTGGATTGAACCCTTGCTCCTCCCCAGCCTCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76528:310..957+

>mRNA_M-pyrifera_M_contig76528.18038.1 ID=mRNA_M-pyrifera_M_contig76528.18038.1|Name=mRNA_M-pyrifera_M_contig76528.18038.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1296bp|location=Sequence derived from alignment at M-pyrifera_M_contig76528:310..957+ (Macrocystis pyrifera P11B4 male)
ATGTCAGAACTAAAGCTAGATAAAGTCAGAGTGCTTGACAGCCGCATCGC
CCCTAACAAGGGCACAATCGCTATTAAGCGTGGTGCACGATCAATCACTT
ACCAAGTCATCACACCAGATGGCTCCAACAACAGCACCAACAATGCCAAC
TTCACCATCAATGTTCCATCAGACGCCCTTGTCAACCGCCGTATCGCTGT
TAGGTTGGTAAATCCTACCATTACCTTCTCTGTTGCTGCAGATGCTGCTA
ATAACGCTGGTCTCAGGGTACTCAACCCTGACTGCGACGCTCCACAATCC
TTCCCTCTCAACCGCATGATCCAGACTGCCTCTGCACAGATCAACAACCA
AACCATCTCCAGCCAAATCCATGACAACTTGGACGCTCTTATTCGCACTT
GTGATGATCATGAGCTCTTTTCTGGTGTCAACTCTGCCTCTCTCTGTCAG
CTAGACAATTGCCAAGACTACGATGGGGTGTATGGCGCGTCCTACAACCC
TCTCTCCCTTGGTGACAACTACCAGAGTGGTCGTGGTGCTTTCCCTCTTC
AAGTCAACTCCAATGAAAACCTTGACACCGCCGCAGCAGCAACTGCCTCT
GTCACTTGCCCCGAGTGGATTGAACCCTTGCTCCTCCCCAGCCTCTGGAT
GTCAGAACTAAAGCTAGATAAAGTCAGAGTGCTTGACAGCCGCATCGCCC
CTAACAAGGGCACAATCGCTATTAAGCGTGGTGCACGATCAATCACTTAC
CAAGTCATCACACCAGATGGCTCCAACAACAGCACCAACAATGCCAACTT
CACCATCAATGTTCCATCAGACGCCCTTGTCAACCGCCGTATCGCTGTTA
GGTTGGTAAATCCTACCATTACCTTCTCTGTTGCTGCAGATGCTGCTAAT
AACGCTGGTCTCAGGGTACTCAACCCTGACTGCGACGCTCCACAATCCTT
CCCTCTCAACCGCATGATCCAGACTGCCTCTGCACAGATCAACAACCAAA
CCATCTCCAGCCAAATCCATGACAACTTGGACGCTCTTATTCGCACTTGT
GATGATCATGAGCTCTTTTCTGGTGTCAACTCTGCCTCTCTCTGTCAGCT
AGACAATTGCCAAGACTACGATGGGGTGTATGGCGCGTCCTACAACCCTC
TCTCCCTTGGTGACAACTACCAGAGTGGTCGTGGTGCTTTCCCTCTTCAA
GTCAACTCCAATGAAAACCTTGACACCGCCGCAGCAGCAACTGCCTCTGT
CACTTGCCCCGAGTGGATTGAACCCTTGCTCCTCCCCAGCCTCTGG
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