mRNA_M-pyrifera_M_contig7642.18016.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7642.18016.1
Unique NamemRNA_M-pyrifera_M_contig7642.18016.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7642.18016.1 vs. uniprot
Match: A0A6H5KYM4_9PHAE (MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM4_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 8.440e-98
Identity = 412/1041 (39.58%), Postives = 494/1041 (47.45%), Query Frame = 1
Query:    1 RTDNHIKNHWNSSMKRRLQMYLERTYGSAYS-----GGPSAEAASPEQP---EGDPV-KEKKGRAAKQKXXXXXXX--DGGRFDLRGDLNGAVRAVRSSKSSGNVGRPKGSKQKQETVKAAKGKKSDPADKKKAKNKQASXXXXRPPG---------------------------KNMTPALPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEVDIHSGFGTPGRSVWRDGGGGLPAPGVRHNKYMKCASPWRASLSCRQSPYTGS-----KRSPSDAGLEGASRPDQRERAGPAPCGFSGPGDSEKWDA-MKDVVYTPSKKPVLSGA--EMLSPDALETSFIASYDAASDAGMLPTFSPYSQSSRQGDAASPGR----GAFSRSLLSPPRSSGKGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRVGRYRXXXXXXXXXXXXXXXXXXXXXXXXMHGRARVWPSPRKGYASQAEGVGGGDRGRVVGQGARFSARPHEXXXXXXXXXXRALLSPDRPSRNHHWKGSA-ERERAMYDYDSDGADAGGTSTRGSPSGARG-CSPRSGRRGRGDEGRRVTSSRGDPYEPWGDEREGSWNGEAEVTQGGGEDEEEETEG---ETSESAYTPSNTQGRG-----GLKRRSDARAG--SASHLTPA-----LDRGIMDDTLLAAVSLVSFQKPRVNDAPRLRGPLGTNALRVTLGTPVVEAGTSSISTSVQAKLSLPRTAPTPTAPSLPGNGGSXXXXXXXXXXXXXXXKDLRGPR--AAWAARLERSRGDXXXXXXXXXXXXXXXXXXXXXXXXGVHLSASSASKARVASTPRGMFDAVSPAAPVEENGTPYSVCRVDRHGSAMKATAQPSAHEEHRREAGAGEDADGGEEMAGGAHG---------------GEAMCRTPLKQMERRGAAGSLRGHVASREGWSG---GSCATPPSVA----RGTPCSGSKFRSGDGDE-SDYSDYEQYCAVKPTPSKRVATPPSATKRLFAD 2847
            RTDNHIKNHWNSSMKRRLQ+YLE+TYGSAY      G PS +A +   P    G+   K KK RAAK K         +GGRFDLRGD++ A+RAVRS K++G VGRPKGS    + V +A         KK+ K     XXXX                               K  +       XXXXXXXXXXXXXXX                                      + E +   G GT       +GGGG+ A   +   +        +    R+    G      KRS  +AGL G+ RPD+R+R G     F    +   W A M+D   TPSKKP L+G+  + LSP ALET  IASYDA SD+ +LPT SP+SQ+SR G  ASP R    G F RSLLSPPRS+GK                                   G                           +H R + W SP +G  ++A G  GG      G+G      P +            L +P +  R+  WK +  + E+  +      A A G +   +P  AR   + RSGR G GD+ R+ TSS GDP+ PWG    G    +A     G     ++ EG   ETS S     + Q R      G+ R         + SH TP+      D    DDTL AA SLVSFQKPRV +APRL+GPLGT+ALRVTLGTPVV  GT SIS+SVQAKLSLPRT+P    PS P      XXXXXXXXXXXX    LR P   A  AA LE                   XXXXXXXXXX   L AS+ +  R +    GMFDAVSP APV+E+GTPYSVCRVDR G    AT   +A  E + E G+                                E +C TPLK      AA       AS  GW G   G  ATPP +A     GTPCSGSKFRS D DE SDYSDYE YC+VKPTP+KRV +PPSATKRLFAD
Sbjct:  147 RTDNHIKNHWNSSMKRRLQVYLEKTYGSAYGDVPEQGQPSGKAEATPSPLLIGGESGGKGKKRRAAKHKLNKSATFVPEGGRFDLRGDVDSALRAVRSGKAAGAVGRPKGSSNSSKRVSSAA--------KKETKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKKKTSAGAKRVXXXXXXXXXXXXXXXXRKKTKRSRPGTGGAVELGGTAQSTSDEDPRFWDKAGDENSESEDRDGVGT-------EGGGGVDAD-CKGRSWCGATGASSSVFDFRRDHPGGKGGGSGKRSSVEAGLAGSPRPDRRDRVG-IHADFMMARECHDWAASMRDNANTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLG-YASPSRDGGGGQFGRSLLSPPRSAGK---------LMYGSEGGGRVWSSSPNGPATLGSHAGSSSTDSLEAARFSLSPFPRSGGGGLGMLHLRDKAWASPIRG--NRAAGREGGHAEERDGKGVAKDKGPQQQELVGG-----GLPTPSKSPRSRDWKAAVGDSEKRFFAA----AAANGAAAAITPGEAREMAAKRSGRVGGGDQ-RQSTSSPGDPFGPWGRRERGESRDDARDAAAG-----KDREGHRVETSSSWSCDKSEQEREDTTPPGVPRNPKCLGTPCAPSHTTPSPPATSTDTSDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGCPSFPDKETGGXXXXXXXXXXXXVAAGLRDPMETAYRAAGLE-----------VGSSAEGGXXXXXXXXXXXSFLGASAEAVKRKSGPCNGMFDAVSPTAPVQESGTPYSVCRVDRKGR-RNATPHAAASAEQKTEHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXATCVAEPLCHTPLKPAAAGRAAAPEAAARAS--GWLGSVSGPWATPPPMAVNMTMGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPTKRVLSPPSATKRLFAD 1129          
BLAST of mRNA_M-pyrifera_M_contig7642.18016.1 vs. uniprot
Match: D7G7U2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U2_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 1.700e-77
Identity = 305/725 (42.07%), Postives = 366/725 (50.48%), Query Frame = 1
Query:  862 PGDSEKWDA-MKDVVYTPSKKPVLSGA--EMLSPDALETSFIASYDAASDAGMLPTFSPYSQSSRQGDAASPGR----GAFSRSLLSPPRSSGK---GCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRVGRYRXXXXXXXXXXXXXXXXXXXXXXXXMHGRARVWPSPRKGYASQAEGVGGGDRGRVVGQGARFSARPHEXXXXXXXXXXRALLSPDRPSRNHHWKGSA-ERERAMYDYDSDGADAGGTSTRGSPSGARG-CSPRSGRRGRGDEGRRVTSSRGDPYEPWGD-EREGSWNGEAEVTQGGGEDEEEETEGETSESAYTPSNTQGRG-----GLKRRSDARAG--SASHLTPA-----LDRGIMDDTLLAAVSLVSFQKPRVNDAPRLRGPLGTNALRVTLGTPVVEAGTSSISTSVQAKLSLPRTAPTPTAPSLPGN--GGSXXXXXXXXXXXXXXXKDLRGPRAAWAARLERSRGDXXXXXXXXXXXXXXXXXXXXXXXXGVHLSASSASKARVASTPRGMFDAVSPAAPVEENGTPYSVCRVDRHGSAMKATAQPSAHEEHRREAGAGEDADGGEEM------------------AGGAHGGEAMCRTPLKQMERRGAAGSLRGHVASREGWSG---GSCATPP----SVARGTPCSGSKFRSGDGDE-SDYSDYEQYCAVKPTPSKRVATPPSATKRLFADA--AEEGMAR 2871
            P + + W A M+D   TPSKKP L+G+  + LSP ALET  IASYDA SD+ +LPT SP+SQ+SR G  ASP R    G F RSLLSPPRS+GK   G G                            E    R+          XXXXXX         +H R + W SP +G   +A G  GG      G+G      P +            L +P +  R+  WK +  + E+  +                +P  AR   + RS R G GD+ R+  +S GDP+  WG  ER GS +G  +    GG+D E     ETS S     + Q R      G+ R         + SH TP+      D    DDTL AA SLVSFQKPR+ +APRL+GPLGT+ALRVTLGTPVV  GT SIS+SVQAKLSLPRT+P    PS P    GG XXXXXXXXXXX    +D     A  AA LE                    XXXXXXXXX   L AS+ +  R +    GMFDAVSP APV+E+GTPYSVCRV+R G    AT   +A  + + E G+                            A    G E +C TPLK      AA    G  A   GWSG   G  ATPP    ++  GTPCSGSKFRS D DE SDYSDYE YC+VKPTPSKRV +PPSATKRLFAD   AE G+ R
Sbjct:    3 PRECDDWAASMRDTSNTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLG-YASPSRDGNGGQFGRSLLSPPRSAGKLMYGSGGRGRVWSSSPNGPATLGSHAGSSSTDSLE--AARFSLSPFPRSGGXXXXXXLGM------LHLRDKAWASPVRG--DRAAGKEGGHAEERDGKGVAKDKGPQQQGLVGG-----GLPTPSKSPRSRDWKAAVGDSEKRFFXXXXXXXXXXXXXXXITPEEAREMAAKRSWRVGGGDQ-RQSPASPGDPFGSWGRRERGGSRDGARDAA--GGKDREAHRV-ETSSSWSCDKSEQEREDTTPPGVPRHPKCLGTPRAPSHTTPSPPATSTDASDADDTLQAAASLVSFQKPRLGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGPPSFPAKETGGXXXXXXXXXXXXAAGLRDPMET-AYRAAGLE------------VGSSAEGGXXXXXXXXXXXXLGASAEAVKRKSGPSNGMFDAVSPTAPVQESGTPYSVCRVERKGR-PNATPPAAASADQKTEHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCGAEPLCHTPLKPAAAGRAAAP--GMAARASGWSGSVSGPWATPPPMSMNMTMGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPSKRVLSPPSATKRLFADVGDAETGLVR 691          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7642.18016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYM4_9PHAE8.440e-9839.58MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G7U2_ECTSI1.700e-7742.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7642contigM-pyrifera_M_contig7642:1311..8262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size2871
Cds size2871
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.5803466-CDS-M-pyrifera_M_contig7642:1310..15341622816663.5803466-CDS-M-pyrifera_M_contig7642:1310..1534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 1311..1534 +
1692278105.9301589-CDS-M-pyrifera_M_contig7642:1310..15341692278105.9301589-CDS-M-pyrifera_M_contig7642:1310..1534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 1311..1534 +
1622816663.592318-CDS-M-pyrifera_M_contig7642:3161..36321622816663.592318-CDS-M-pyrifera_M_contig7642:3161..3632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 3162..3632 +
1692278105.954009-CDS-M-pyrifera_M_contig7642:3161..36321692278105.954009-CDS-M-pyrifera_M_contig7642:3161..3632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 3162..3632 +
1622816663.6035578-CDS-M-pyrifera_M_contig7642:3953..41521622816663.6035578-CDS-M-pyrifera_M_contig7642:3953..4152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 3954..4152 +
1692278105.967054-CDS-M-pyrifera_M_contig7642:3953..41521692278105.967054-CDS-M-pyrifera_M_contig7642:3953..4152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 3954..4152 +
1622816663.6156497-CDS-M-pyrifera_M_contig7642:5278..56101622816663.6156497-CDS-M-pyrifera_M_contig7642:5278..5610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 5279..5610 +
1692278105.9862504-CDS-M-pyrifera_M_contig7642:5278..56101692278105.9862504-CDS-M-pyrifera_M_contig7642:5278..5610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 5279..5610 +
1622816663.6255531-CDS-M-pyrifera_M_contig7642:5724..62461622816663.6255531-CDS-M-pyrifera_M_contig7642:5724..6246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 5725..6246 +
1692278105.9994607-CDS-M-pyrifera_M_contig7642:5724..62461692278105.9994607-CDS-M-pyrifera_M_contig7642:5724..6246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 5725..6246 +
1622816663.6359842-CDS-M-pyrifera_M_contig7642:6333..73571622816663.6359842-CDS-M-pyrifera_M_contig7642:6333..7357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 6334..7357 +
1692278106.011595-CDS-M-pyrifera_M_contig7642:6333..73571692278106.011595-CDS-M-pyrifera_M_contig7642:6333..7357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 6334..7357 +
1622816663.6477187-CDS-M-pyrifera_M_contig7642:8163..82621622816663.6477187-CDS-M-pyrifera_M_contig7642:8163..8262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 8164..8262 +
1692278106.0290716-CDS-M-pyrifera_M_contig7642:8163..82621692278106.0290716-CDS-M-pyrifera_M_contig7642:8163..8262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7642 8164..8262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7642.18016.1prot_M-pyrifera_M_contig7642.18016.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7642 1311..8262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7642.18016.1

>prot_M-pyrifera_M_contig7642.18016.1 ID=prot_M-pyrifera_M_contig7642.18016.1|Name=mRNA_M-pyrifera_M_contig7642.18016.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=957bp
RTDNHIKNHWNSSMKRRLQMYLERTYGSAYSGGPSAEAASPEQPEGDPVK
EKKGRAAKQKPKPPPPPDGGRFDLRGDLNGAVRAVRSSKSSGNVGRPKGS
KQKQETVKAAKGKKSDPADKKKAKNKQASSSKKRPPGKNMTPALPGSGGG
GDSPPGRNASQGYYESSSDGEPRQRLGGGGAGYTGEEGGDDEEEEDEREE
EDVEVDIHSGFGTPGRSVWRDGGGGLPAPGVRHNKYMKCASPWRASLSCR
QSPYTGSKRSPSDAGLEGASRPDQRERAGPAPCGFSGPGDSEKWDAMKDV
VYTPSKKPVLSGAEMLSPDALETSFIASYDAASDAGMLPTFSPYSQSSRQ
GDAASPGRGAFSRSLLSPPRSSGKGCGGGGGGGGGGGGSGGGGGGGSSGG
GGGGGEGRVGRYRGGGGGGGGGGGGGGGGGGGDGGGGMHGRARVWPSPRK
GYASQAEGVGGGDRGRVVGQGARFSARPHEEEEEDDDGGGRALLSPDRPS
RNHHWKGSAERERAMYDYDSDGADAGGTSTRGSPSGARGCSPRSGRRGRG
DEGRRVTSSRGDPYEPWGDEREGSWNGEAEVTQGGGEDEEEETEGETSES
AYTPSNTQGRGGLKRRSDARAGSASHLTPALDRGIMDDTLLAAVSLVSFQ
KPRVNDAPRLRGPLGTNALRVTLGTPVVEAGTSSISTSVQAKLSLPRTAP
TPTAPSLPGNGGSNGGSRGGDAGGGEGGKDLRGPRAAWAARLERSRGDGN
GGSGGGGVGGGSGGRGRAQGSGGVHLSASSASKARVASTPRGMFDAVSPA
APVEENGTPYSVCRVDRHGSAMKATAQPSAHEEHRREAGAGEDADGGEEM
AGGAHGGEAMCRTPLKQMERRGAAGSLRGHVASREGWSGGSCATPPSVAR
GTPCSGSKFRSGDGDESDYSDYEQYCAVKPTPSKRVATPPSATKRLFADA
AEEGMAR
back to top

mRNA from alignment at M-pyrifera_M_contig7642:1311..8262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7642.18016.1 ID=mRNA_M-pyrifera_M_contig7642.18016.1|Name=mRNA_M-pyrifera_M_contig7642.18016.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6952bp|location=Sequence derived from alignment at M-pyrifera_M_contig7642:1311..8262+ (Macrocystis pyrifera P11B4 male)
AGAACCGACAACCACATCAAGAACCACTGGAACTCGAGCATGAAGCGACG GCTCCAGATGTACTTGGAGAGGACCTACGGCTCGGCCTACAGCGGCGGGC CGTCAGCAGAGGCGGCTTCCCCTGAGCAGCCAGAAGGTGACCCCGTGAAG GAGAAGAAAGGAAGAGCTGCCAAGCAAAAGCCCAAGCCGCCGCCCCCTCC GGACGGGGGGAGGTTCGATCTCAGGTAAGGTGACGTTTTGTGGGAAGAGG GGGTATTTTGCGCCGCACACCTATCTTTGTTTTTTTCGCAAGCAGTAGGC TTGTATTTTGTAAGATCAACTATGATTGGAAATTGTTTCTGGGCTCCAGG AACTGGGTTTTTAGGCCGAATTTACGGCTTTTACCGGGCGGAACAGTCAA AAACACCGGTAGACTCCTCAGAATGCTCCCCGATTTTTTCCGAGAACTTT TTTGAACAGTTTTCCGATTTTCCAGAGCATCAAATTGATTTCTGGCGCAG CCAATCAGTTTTCTCTGGAGGGTAAAAAAATATTTTGTTTTGTCAGAACT GGGACCAGAAATGATAGGTATTGATGTCCTCAGAACTGGCAATATGGACG AACAGTCAAACTACGACTCTGGAGAAACGGAAAACTGTTCAAGAAAGCTC TCGGAAAACTAAAGGGAGCATCTGGAGGAGTCTACCGGTGTTTTTGACCG TCCTACCGAGTAAATCGCGGGTTTTCGGCTACATGACCCGGTTCTTAGAG CCCTTCAGAAATATCCCATAGTAGTTGATTTGAGCAGTAGCCTCCTGTTG CAGGCGACAGGCTGCTATTGCAAACGTGCAGACAGTAGGCTCATGCTTCA AGCTCATGTTGCAAGCGGTAAGCTCCTGTCGTTGGCAGTGGGAAGCTGTA GGCTCCCATATCGAGCAGCAAGCAAGCTCCTGTTGCTTGCAATAGGATGA TATTGCAAGCAGTAGGCTCCCGTTGCAACGAGTAGGCAGATGCTCTCGTG TTGAGGGTGCTTCGGTGCTGCACCGGCTGCTGTTGTGTCGGCTGCATGCA CCTTGGCGTGATGCTTTCGATCGAGCGAAGGTTTTCCGTGCGTGTTTCGT GGCCGCTGCCCGCTCGCGCTTCGCATTAGACGTGCCACCTTCATCACCAC CTGCCAGATGCATCTCAACATCTATCCATCACGGGGGGCGATAGTGACTA GAACGAACGATGGGCCCAAAAATATATATTTCCCGCTATTTTTTCTGTTA ATATTTGGTTCTGATTACTATGCTGCCCCGTGATCGTGTTGAGGCTCGTA GCGTCAGGGTGTAGGGTAGGGTCAGGTAGGTACCTATTGATAGCTGTGTT GGGGGTGTTCGTTCGTTCCTTCCGGTGGCCGTGGCTCGTTGGCGAAGAAT CCAAGCCTTTGTTCCAAATTATCACGCGGCGATGATTGATACTCGTAAGG CGCACCTATTTTTTCGGACCAGTCATACACGATAGCGTTGGCACCCCCCC CCCCTTGTGCGTAAAGGCAGGGCATCCACTGGTGCCCGGTCGGCCTTTTG CGCACGGTATGTAAAAAAAAGTTTTAGACCCCCTCTCTGACACCATCAAG TACTAAAGACACACTTGCAGTCGTATTCGCATCGAGAGGGTTTTCCGGGT CATATCTCCGCTCCTAGCAAATATAGCACAAGCTTGAACACATGCTTGAA ACTTGTAGCATCATGGCTCGTCTCTAGCCGTGTCCTCGCTTGGCCCCTAG CGTCGTAGCTGCACGTAGTTTACTCTCCGCCCGCCGCGTTCGCCTCCGCT GTCGCCGCCCCGATTTTTTTTTTTGTTCCCTCGTTCGCCACCCACACCCA GAGGAGACTTGAACGGTGCGGTGAGAGCCGTGCGAAGCAGCAAATCATCC GGCAACGTGGGCAGACCCAAGGGCAGCAAGCAGAAGCAAGAGACAGTGAA GGCGGCGAAGGGCAAGAAGTCCGATCCCGCGGACAAGAAGAAGGCGAAGA ACAAGCAGGCCTCCAGCTCCAAGAAGCGGCCGCCGGGGAAGAATATGACG CCGGCCCTCCCAGGCTCCGGTGGTGGTGGCGATAGCCCCCCCGGTCGAAA CGCCTCCCAAGGGTATTACGAGTCGAGCAGCGATGGGGAGCCTCGGCAAC GTCTTGGCGGAGGTGGTGCGGGGTACACTGGAGAGGAGGGTGGGGACGAT GAGGAGGAGGAAGATGAGAGGGAGGAGGAGGACGTGGAAGTGGACATCCA CTCCGGGTTTGGAACTCCGGGAAGAAGCGTTTGGCGCGACGGGGGAGGGG GGCTCCCGGCGCCTGGCGTCAGGTGAGGGTTGTGTGCCATACGACGTAGG AGGGTGGCATTTTGAGGGTGGGGAGTTGTGGCTGCCCGTCCGCAGGCCTC GCCGGAAGCGGAGAAACGCGCTATATGTTAGGCACCGATCATTGGAACAT TACAGCCCCGCCATCGCTGATTGGACAATAGGTTAGGCAAGATAAAGAAA TTCACAGTATATGTACGTATATACAAGCAGTAGTCGATAGTATTCTCGTC GCGGCTTGCAGAATTCGTCGATGGTTGTGCGTTTGAAAGCGACGCTGTTC CCCCGATGCCTCGCGCTAAGCCGCCGCTGCGCTGCGCCCCAAGGCACAAT AAATATATGAAATGTGCCTCACCCTGGCGTGCGTCCCTGTCTTGCAGGCA ATCCCCATATACTGGGAGCAAGCGATCGCCGAGCGATGCGGGGCTTGAAG GTGCTTCGAGGCCGGACCAGCGGGAGCGCGCGGGGCCCGCCCCCTGCGGC TTTTCGGGGCCTGGGGACAGCGAGAAGTGGGACGCGATGAAGGTGCGGAC GATGGCGCTACTATAGTACTGTGCTGGCTGCCTCGCAGTAATGTTACTTA TGAGTTACTGCTTGGCCTAGCTTGGAACGAAATGGTTGCTGATCCACAGT ATGCCGGGAAGGCATGTAGCAATCAGAACCAAAATGTGGTGTGTAAACAC ATCGGGTATTTTAGGTCTTTTGGGTCGATCGTCGGTTATGATTACTGCAT TGAATATTACGGGGGGCCATAGTAAATAGGACCAAATATTGCTAGTAAAA ATAGGTAAATATATGGATTTTTATGTATACCATAGGTCCTATTAACTATG GACCCCCGTAATAGTAGCCCTTCGTAATAGCTCAGCGGTACATGCTCATT CCGAGAAATGAACCCATGATTTCATGTTGCTTTCGAGCGTTTTTCCGAGG TGGTCGGGGTAAGAGTTACGGTTACAGGGATTGGGCTTAAAACTCAAGTG TATTTCTACTTGGGAGGACCATAGTAATAGTGATCAGGACCCGTCATACA CACCAAAACCTAGTCATTCCAGTGGTTTTACTATTACTGGGCACATTTTG GTCCTGATTACTGTGTTCCCCCCGTATTTATATTTTTCCGAACCTTGAGT AAGGTCTGTACAGACCTCGTTGGCTGTTTCGGGTGTGTGGCGGGGGGGCA GGGGGTGCCTTCGTTGAAGAAGGGGGGTGGAATCTGACGAGGTCGACATT GTTGTCCAAGTTGCGTTGCCGAGTCATGCGGTTTAGGGGAGATGTGGGGG CGTCCAAAGCAGCAGCCCCACTCCTGCGGTCGCTGTCATGTGTTGCTGAA TCAACGGAGGCGGGAGCGAAGTCACGTTTACTAAACTTTGCGAAATCCAC TGCTGATAAGCTAAGCTACCAACTGATAAACTGACAACTGCGAAGCCAAT TTCTGCCGTCCCTACTAAAAGACTACCAGTACGAAACTACCAAGTTACTT ATGCAGCTGCTATGCTAAGCCGACCACTGTTAGCCCAATAAAATTAGTGT GAAGTGCGGAACTACAGTAGTATTTCCGACTGCTAAGCTGACGAAACGTT GGCGTTGCCTGGTGCTCCTCTTCTACCCCGCACAATGACCAACCTTGTGT ATGGCACCATGGCACCAGGATGTCGTTTATACGCCATCGAAGAAACCCGT CTTGAGCGGAGCGGAGATGCTCTCGCCCGACGCGCTGGAAACTTCGTTCA TCGCGAGCTACGATGCGGCCTCCGACGCCGGCATGCTGCCGACATTTTCC CCCTACAGCCAGAGCAGTCGTCAGGGCGACGCCGCTTCGCCCGGCCGAGG AGCATTCTCTCGCTCTCTCCTCTCACCCCCTCGCTCCTCGGGGAAAGGTT GTGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCAGCGGCGGCGGC GGCGGTGGCGGAAGCTCCGGCGGTGGTGGCGGTGGCGGCGAGGGTAGGGT GTGGCAGTCACCGCAAGGGGCCGCGCCATTCGACGGACGCATGGATCGCT CTCGGAGCGACTCTATCGGGGATTCGAATCTGTCGCGCTCTCTCCCCTCC CCATCCTCGCGCAGCGGTCGCTACCGTGGCGGGGGCGGGGGCGGGGGCGG TGGTGGTGGTGGTGGCGGTGGCGGTGGCGGTGGTGATGGTGGTGGTGGAA TGCACGGGCGCGCGAGAGTGTGGCCATCGCCGCGAAAGGGGTACGCTAGC CAAGCCGAAGGTGTCGGGGGGGGTGACCGCGGTCGAGTCGTCGGGCAGGG CGCTCGTTTCAGTGCCCGGCCGCACGAAGAAGAGGAGGAGGACGATGATG GCGGCGGCAGAGCGCTGCTCAGCCCTGACAGGCCGTCAAGGAACCACCAC TGGAAGGGCTCGGCCGAAAGGGAGCGGGCAATGTATGACTACGACTCCGA TGGTGCTGACGCGGGTGGTACGAGTACCAGGGGATCTCCGAGCGGTGCAC GCGGGTGCTCGCCGCGGAGTGGCCGACGCGGGAGGGGCGATGAAGGGAGG AGGGTAACTTCCTCTCGGGGCGACCCGTACGAGCCGTGGGGCGATGAACG CGAGGGGTCTTGGAACGGGGAGGCGGAGGTGACACAGTATGGCCCGACGG GCGGGGGTAGACATTGCCGCAGACAGAGATCACAGAAGGGAAGAAACGAT GAAGCCGGCAGCGAAGGACGAAGAGGAGGCGGAGAAGATGAGGAAGAAGA AACAGAAGGGGAGACATCAGAATCGGCCTACACCCCGTCGAATACACAGG GGCGGGGCGGCCTCAAGCGCCGCTCGGACGCGCGGGCCGGCAGCGCCAGC CACCTCACGCCTGCGTTGGATAGGGGTATCATGGACGACACGCTCCTGGC GGCCGTCTCGCTCGTGTCCTTCCAAAAACCGAGGGTGAACGACGCGCCGA GACTCAGGGGGCCCCTCGGGACGAACGCCCTGAGGGTGACGCTCGGCACG CCGGTGGTAGAGGCGGGGACGTCTTCTATCAGCACCAGCGTGCAGGCCAA GCTCTCGCTCCCGAGAACAGCACCAACTCCTACCGCCCCCTCTCTCCCCG GCAATGGCGGCAGCAACGGCGGCAGCCGAGGCGGCGATGCTGGTGGAGGC GAAGGAGGCAAAGACTTGCGAGGCCCGAGAGCCGCATGGGCGGCACGTCT GGAAAGGTCTCGCGGCGACGGCAATGGCGGTAGTGGCGGTGGCGGCGTCG GCGGCGGCAGCGGTGGCCGTGGCCGTGCGCAGGGCAGCGGCGGTGTCCAC TTGAGCGCATCCTCCGCGTCGAAAGCGCGAGTCGCGTCGACCCCTCGCGG CATGTTCGACGCGGTGTCTCCCGCGGCCCCCGTCGAGGAAAACGGGACCC CCTACTCGGTGTGCAGGGTGGACCGCCACGGGAGCGCCATGAAAGCAACC GCCCAGCCCAGCGCCCACGAAGAGCACAGGCGAGAGGCGGGAGCGGGGGA GGACGCGGATGGAGGTGAGGAGATGGCGGGGGGAGCGCACGGGGGAGAAG CTATGTGTCGCACCCCTCTCAAACAGATGGAGCGAAGGGGCGCGGCGGGG TCGTTGCGAGGGCACGTGGCCTCGCGCGAGGGGTGGTCGGGGGGGTCCTG CGCGACCCCGCCGTCGGTGGCGAGGGGGACGCCGTGCTCTGGCAGCAAGT TCCGCTCTGGAGATGGCGATGAAAGCGACTACTCGGACTACGAACAGGTA CGTGCTTCGTCCGCCGTAGGTTGTTAATTTTCTTCTTGGGTTTTGTGTTT TTTTTGCCGTGAGATGAGGGATGGGACTGCGGGAGTTGTTGGCATAAGAG GCGGTCGTTTTGGGGTTGTCGGTGCGCTCAGCTTAGCGTTGAGGTTGTCG CGGCGTGCGTGGTACTGCAGTAGTGCAGTAGAGTAAGGGGGGGTGAAAAA AGGTACTAGTTCTGTGTATGTATTGCGGACTCGTAATCGTGACTGAAGTT ACCATCTGTAACTGTAGGTTGATGCACACTCACGGCGAACTTGTGCAGGA GTGACAAGAGCTTGACTTTGATTTTTTTTTCTGTAGGCCGTGGTACATTG CGGTATGAATTTTTAAGTGAGTCCTGTGCGCGCAGCGTACGCGTGGCCCA AGAAAAGCAACCCACACCTTGCTCACACGTATTGTACAGGTACTGATAAT TAGCTCTATTATTATCCCTCTAGGGACTACAGAGGGGAAACTTTACGGAA AAAAACAAAGTGACGACTACAGCAACGGCCACTGCATCAGTGGGAGATTA TATTATTAAAAAAATGGCGTCCGAGTTACAATGGTTGAATGCAAGGAGTC GTGCGACACTGGCGCAATACGTTCCTGCCCGCTCTGCTGGGCGCCCCTGC TTGTCGTGGACAGGTCGCTGTCTCGGGGTGCCTAAAAGGTTCATACGTTC TTGCATCCTTGGCTTTACACCACCCCCACGCCAACCCCCGCCGCCCCCCA CCCCCGCCCGCTCTCGTGCTTCCGGACCGCCTGGCGCCGCCGTTCTCGAA CAGTACTGTGCCGTCAAGCCTACCCCCTCAAAGCGCGTAGCGACGCCCCC AAGCGCCACGAAGCGCCTGTTTGCGGACGCTGCCGAGGAAGGCATGGCGC GG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7642:1311..8262+

>mRNA_M-pyrifera_M_contig7642.18016.1 ID=mRNA_M-pyrifera_M_contig7642.18016.1|Name=mRNA_M-pyrifera_M_contig7642.18016.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5742bp|location=Sequence derived from alignment at M-pyrifera_M_contig7642:1311..8262+ (Macrocystis pyrifera P11B4 male)
AGAACCGACAACCACATCAAGAACCACTGGAACTCGAGCATGAAGCGACG
GCTCCAGATGTACTTGGAGAGGACCTACGGCTCGGCCTACAGCGGCGGGC
CGTCAGCAGAGGCGGCTTCCCCTGAGCAGCCAGAAGGTGACCCCGTGAAG
GAGAAGAAAGGAAGAGCTGCCAAGCAAAAGCCCAAGCCGCCGCCCCCTCC
GGACGGGGGGAGGTTCGATCTCAGAGAACCGACAACCACATCAAGAACCA
CTGGAACTCGAGCATGAAGCGACGGCTCCAGATGTACTTGGAGAGGACCT
ACGGCTCGGCCTACAGCGGCGGGCCGTCAGCAGAGGCGGCTTCCCCTGAG
CAGCCAGAAGGTGACCCCGTGAAGGAGAAGAAAGGAAGAGCTGCCAAGCA
AAAGCCCAAGCCGCCGCCCCCTCCGGACGGGGGGAGGTTCGATCTCAGAG
GAGACTTGAACGGTGCGGTGAGAGCCGTGCGAAGCAGCAAATCATCCGGC
AACGTGGGCAGACCCAAGGGCAGCAAGCAGAAGCAAGAGACAGTGAAGGC
GGCGAAGGGCAAGAAGTCCGATCCCGCGGACAAGAAGAAGGCGAAGAACA
AGCAGGCCTCCAGCTCCAAGAAGCGGCCGCCGGGGAAGAATATGACGCCG
GCCCTCCCAGGCTCCGGTGGTGGTGGCGATAGCCCCCCCGGTCGAAACGC
CTCCCAAGGGTATTACGAGTCGAGCAGCGATGGGGAGCCTCGGCAACGTC
TTGGCGGAGGTGGTGCGGGGTACACTGGAGAGGAGGGTGGGGACGATGAG
GAGGAGGAAGATGAGAGGGAGGAGGAGGACGTGGAAGTGGACATCCACTC
CGGGTTTGGAACTCCGGGAAGAAGCGTTTGGCGCGACGGGGGAGGGGGGC
TCCCGGCGCCTGGCGTCAGAGGAGACTTGAACGGTGCGGTGAGAGCCGTG
CGAAGCAGCAAATCATCCGGCAACGTGGGCAGACCCAAGGGCAGCAAGCA
GAAGCAAGAGACAGTGAAGGCGGCGAAGGGCAAGAAGTCCGATCCCGCGG
ACAAGAAGAAGGCGAAGAACAAGCAGGCCTCCAGCTCCAAGAAGCGGCCG
CCGGGGAAGAATATGACGCCGGCCCTCCCAGGCTCCGGTGGTGGTGGCGA
TAGCCCCCCCGGTCGAAACGCCTCCCAAGGGTATTACGAGTCGAGCAGCG
ATGGGGAGCCTCGGCAACGTCTTGGCGGAGGTGGTGCGGGGTACACTGGA
GAGGAGGGTGGGGACGATGAGGAGGAGGAAGATGAGAGGGAGGAGGAGGA
CGTGGAAGTGGACATCCACTCCGGGTTTGGAACTCCGGGAAGAAGCGTTT
GGCGCGACGGGGGAGGGGGGCTCCCGGCGCCTGGCGTCAGGCACAATAAA
TATATGAAATGTGCCTCACCCTGGCGTGCGTCCCTGTCTTGCAGGCAATC
CCCATATACTGGGAGCAAGCGATCGCCGAGCGATGCGGGGCTTGAAGGTG
CTTCGAGGCCGGACCAGCGGGAGCGCGCGGGGCCCGCCCCCTGCGGCTTT
TCGGGGCCTGGGGACAGCGAGAAGTGGGACGCGATGAAGGCACAATAAAT
ATATGAAATGTGCCTCACCCTGGCGTGCGTCCCTGTCTTGCAGGCAATCC
CCATATACTGGGAGCAAGCGATCGCCGAGCGATGCGGGGCTTGAAGGTGC
TTCGAGGCCGGACCAGCGGGAGCGCGCGGGGCCCGCCCCCTGCGGCTTTT
CGGGGCCTGGGGACAGCGAGAAGTGGGACGCGATGAAGGATGTCGTTTAT
ACGCCATCGAAGAAACCCGTCTTGAGCGGAGCGGAGATGCTCTCGCCCGA
CGCGCTGGAAACTTCGTTCATCGCGAGCTACGATGCGGCCTCCGACGCCG
GCATGCTGCCGACATTTTCCCCCTACAGCCAGAGCAGTCGTCAGGGCGAC
GCCGCTTCGCCCGGCCGAGGAGCATTCTCTCGCTCTCTCCTCTCACCCCC
TCGCTCCTCGGGGAAAGGTTGTGGCGGTGGTGGTGGTGGTGGCGGCGGCG
GCGGCGGCAGCGGCGGCGGCGGCGGTGGCGGAAGCTCCGGCGGTGGTGGC
GGTGGCGGCGAGGGTAGGGTGATGTCGTTTATACGCCATCGAAGAAACCC
GTCTTGAGCGGAGCGGAGATGCTCTCGCCCGACGCGCTGGAAACTTCGTT
CATCGCGAGCTACGATGCGGCCTCCGACGCCGGCATGCTGCCGACATTTT
CCCCCTACAGCCAGAGCAGTCGTCAGGGCGACGCCGCTTCGCCCGGCCGA
GGAGCATTCTCTCGCTCTCTCCTCTCACCCCCTCGCTCCTCGGGGAAAGG
TTGTGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCAGCGGCGGCG
GCGGCGGTGGCGGAAGCTCCGGCGGTGGTGGCGGTGGCGGCGAGGGTAGG
GTCGGTCGCTACCGTGGCGGGGGCGGGGGCGGGGGCGGTGGTGGTGGTGG
TGGCGGTGGCGGTGGCGGTGGTGATGGTGGTGGTGGAATGCACGGGCGCG
CGAGAGTGTGGCCATCGCCGCGAAAGGGGTACGCTAGCCAAGCCGAAGGT
GTCGGGGGGGGTGACCGCGGTCGAGTCGTCGGGCAGGGCGCTCGTTTCAG
TGCCCGGCCGCACGAAGAAGAGGAGGAGGACGATGATGGCGGCGGCAGAG
CGCTGCTCAGCCCTGACAGGCCGTCAAGGAACCACCACTGGAAGGGCTCG
GCCGAAAGGGAGCGGGCAATGTATGACTACGACTCCGATGGTGCTGACGC
GGGTGGTACGAGTACCAGGGGATCTCCGAGCGGTGCACGCGGGTGCTCGC
CGCGGAGTGGCCGACGCGGGAGGGGCGATGAAGGGAGGAGGGTAACTTCC
TCTCGGGGCGACCCGTACGAGCCGTGGGGCGATGAACGCGAGGGGTCTTG
GAACGGGGAGGCGGAGGTGACACACGGTCGCTACCGTGGCGGGGGCGGGG
GCGGGGGCGGTGGTGGTGGTGGTGGCGGTGGCGGTGGCGGTGGTGATGGT
GGTGGTGGAATGCACGGGCGCGCGAGAGTGTGGCCATCGCCGCGAAAGGG
GTACGCTAGCCAAGCCGAAGGTGTCGGGGGGGGTGACCGCGGTCGAGTCG
TCGGGCAGGGCGCTCGTTTCAGTGCCCGGCCGCACGAAGAAGAGGAGGAG
GACGATGATGGCGGCGGCAGAGCGCTGCTCAGCCCTGACAGGCCGTCAAG
GAACCACCACTGGAAGGGCTCGGCCGAAAGGGAGCGGGCAATGTATGACT
ACGACTCCGATGGTGCTGACGCGGGTGGTACGAGTACCAGGGGATCTCCG
AGCGGTGCACGCGGGTGCTCGCCGCGGAGTGGCCGACGCGGGAGGGGCGA
TGAAGGGAGGAGGGTAACTTCCTCTCGGGGCGACCCGTACGAGCCGTGGG
GCGATGAACGCGAGGGGTCTTGGAACGGGGAGGCGGAGGTGACACAAGGA
GGCGGAGAAGATGAGGAAGAAGAAACAGAAGGGGAGACATCAGAATCGGC
CTACACCCCGTCGAATACACAGGGGCGGGGCGGCCTCAAGCGCCGCTCGG
ACGCGCGGGCCGGCAGCGCCAGCCACCTCACGCCTGCGTTGGATAGGGGT
ATCATGGACGACACGCTCCTGGCGGCCGTCTCGCTCGTGTCCTTCCAAAA
ACCGAGGGTGAACGACGCGCCGAGACTCAGGGGGCCCCTCGGGACGAACG
CCCTGAGGGTGACGCTCGGCACGCCGGTGGTAGAGGCGGGGACGTCTTCT
ATCAGCACCAGCGTGCAGGCCAAGCTCTCGCTCCCGAGAACAGCACCAAC
TCCTACCGCCCCCTCTCTCCCCGGCAATGGCGGCAGCAACGGCGGCAGCC
GAGGCGGCGATGCTGGTGGAGGCGAAGGAGGCAAAGACTTGCGAGGCCCG
AGAGCCGCATGGGCGGCACGTCTGGAAAGGTCTCGCGGCGACGGCAATGG
CGGTAGTGGCGGTGGCGGCGTCGGCGGCGGCAGCGGTGGCCGTGGCCGTG
CGCAGGGCAGCGGCGGTGTCCACTTGAGCGCATCCTCCGCGTCGAAAGCG
CGAGTCGCGTCGACCCCTCGCGGCATGTTCGACGCGGTGTCTCCCGCGGC
CCCCGTCGAGGAAAACGGGACCCCCTACTCGGTGTGCAGGGTGGACCGCC
ACGGGAGCGCCATGAAAGCAACCGCCCAGCCCAGCGCCCACGAAGAGCAC
AGGCGAGAGGCGGGAGCGGGGGAGGACGCGGATGGAGGTGAGGAGATGGC
GGGGGGAGCGCACGGGGGAGAAGCTATGTGTCGCACCCCTCTCAAACAGA
TGGAGCGAAGGGGCGCGGCGGGGTCGTTGCGAGGGCACGTGGCCTCGCGC
GAGGGGTGGTCGGGGGGGTCCTGCGCGACCCCGCCGTCGGTGGCGAGGGG
GACGCCGTGCTCTGGCAGCAAGTTCCGCTCTGGAGATGGCGATGAAAGCG
ACTACTCGGACTACGAACAGAGGAGGCGGAGAAGATGAGGAAGAAGAAAC
AGAAGGGGAGACATCAGAATCGGCCTACACCCCGTCGAATACACAGGGGC
GGGGCGGCCTCAAGCGCCGCTCGGACGCGCGGGCCGGCAGCGCCAGCCAC
CTCACGCCTGCGTTGGATAGGGGTATCATGGACGACACGCTCCTGGCGGC
CGTCTCGCTCGTGTCCTTCCAAAAACCGAGGGTGAACGACGCGCCGAGAC
TCAGGGGGCCCCTCGGGACGAACGCCCTGAGGGTGACGCTCGGCACGCCG
GTGGTAGAGGCGGGGACGTCTTCTATCAGCACCAGCGTGCAGGCCAAGCT
CTCGCTCCCGAGAACAGCACCAACTCCTACCGCCCCCTCTCTCCCCGGCA
ATGGCGGCAGCAACGGCGGCAGCCGAGGCGGCGATGCTGGTGGAGGCGAA
GGAGGCAAAGACTTGCGAGGCCCGAGAGCCGCATGGGCGGCACGTCTGGA
AAGGTCTCGCGGCGACGGCAATGGCGGTAGTGGCGGTGGCGGCGTCGGCG
GCGGCAGCGGTGGCCGTGGCCGTGCGCAGGGCAGCGGCGGTGTCCACTTG
AGCGCATCCTCCGCGTCGAAAGCGCGAGTCGCGTCGACCCCTCGCGGCAT
GTTCGACGCGGTGTCTCCCGCGGCCCCCGTCGAGGAAAACGGGACCCCCT
ACTCGGTGTGCAGGGTGGACCGCCACGGGAGCGCCATGAAAGCAACCGCC
CAGCCCAGCGCCCACGAAGAGCACAGGCGAGAGGCGGGAGCGGGGGAGGA
CGCGGATGGAGGTGAGGAGATGGCGGGGGGAGCGCACGGGGGAGAAGCTA
TGTGTCGCACCCCTCTCAAACAGATGGAGCGAAGGGGCGCGGCGGGGTCG
TTGCGAGGGCACGTGGCCTCGCGCGAGGGGTGGTCGGGGGGGTCCTGCGC
GACCCCGCCGTCGGTGGCGAGGGGGACGCCGTGCTCTGGCAGCAAGTTCC
GCTCTGGAGATGGCGATGAAAGCGACTACTCGGACTACGAACAGTACTGT
GCCGTCAAGCCTACCCCCTCAAAGCGCGTAGCGACGCCCCCAAGCGCCAC
GAAGCGCCTGTTTGCGGACGCTGCCGAGGAAGGCATGGCGCGGTACTGTG
CCGTCAAGCCTACCCCCTCAAAGCGCGTAGCGACGCCCCCAAGCGCCACG
AAGCGCCTGTTTGCGGACGCTGCCGAGGAAGGCATGGCGCGG
back to top