mRNA_M-pyrifera_M_contig76012.17929.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76012.17929.1
Unique NamemRNA_M-pyrifera_M_contig76012.17929.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: A0A518CCC1_9BACT (Glycosyl transferase family 64 domain protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518CCC1_9BACT)

HSP 1 Score: 101 bits (251), Expect = 3.850e-23
Identity = 62/173 (35.84%), Postives = 94/173 (54.34%), Query Frame = 1
Query:   13 ILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVLQTANDLGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLSIHGIWGRWPTRSNPYRPGEIPPDFTRAPIVLTRAFVVNKAHMGTFWVAAPHLDFLAASATPRWNGEDILFS 531
            +++++KRP  V +I+  +    +V E IV+NNN   T     A       V+  A D+G++TRF+   LAT++ +L QDDD+ L AE++  L+  +H     IHG++GR P     Y    I  D T +PIVLTR  V ++ +   F+  AP    +     P  NGEDI+FS
Sbjct:    7 VILNWKRPTNVARILSGWQASGIVTEAIVWNNNPAATFRHQWAN------VVNAAQDMGLYTRFATACLATNDCVLIQDDDLELPAESLRTLVDAWHDDFGIIHGVFGRAPKPDGSYA-RNIGGD-TESPIVLTRVLVAHRRYASQFFQVAPAFANVQQGGKPAGNGEDIIFS 171          
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: A0A5J4YB26_9CHLO (Glyco_transf_64 domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YB26_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 5.620e-21
Identity = 64/178 (35.96%), Postives = 94/178 (52.81%), Query Frame = 1
Query:    4 LSVILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVLQTANDLGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLSIHGIWGRWPTRSNP-YRPGEIPPDFTRAPIVLTRAFVVNKAHMGTFWVAAPHLDFLAASATPRWNGEDILFSL 534
            ++V+L++FKR   + KIV +    + V E+IV +NN   T   P  + I  L ++   +DLGV  RF A  LA +  IL  DDD++++   +  LL+  + HP SI G WGR    SNP Y   +  P      I LT+A +++      FW A+  +  +A  A   WNGEDI  SL
Sbjct:  235 VTVVLLNFKRSDNIRKIVDNMVNYNSVAEIIVVSNNPNSTFTYPNKKVIV-LDMMAYEDDLGVAVRFKACLLAMNRHILIADDDLMVTEAGLSNLLTARYEHPWSIVGFWGRDYNHSNPDYAYVDTEPG--HHDIALTKALLLDTCACRAFWEASHLMQDIAHEAAVTWNGEDIFMSL 409          
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: A0A7R9V959_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V959_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 6.690e-16
Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 1
Query:    1 QLSVILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVLQ--TAN-DLGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLSIHGIWGR-----WPTRSNPYRPGEIPPDFTRAPIVLTRAFVVNKAHMGTFWVAAPHL-DFLAASATPRWNGEDILFSL 534
            ++SV++++++RP  V +I++ Y   D V E+IV+   +   D T    S P++ ++   +AN + G+ TRF A  LA  E +L QDDD  L  + +   ++     P  + G +GR     W  R   Y    +PP   R  IVLT   + + A    FW AAP + +F+   + P WNGEDI FSL
Sbjct:    8 RVSVVMLNWRRPGNVRRILRKYVEYDAVEEIIVW---MCHPD-TRFNFSHPRVRIVDKPSANSEFGLATRFRACLLAKSEWVLVQDDDHYLQPQGLAAFMAAKASSPARLVGAFGRDWRGGW--RDAAYVRRRVPPGPAR--IVLTVLALTDVAACQAFWDAAPAVQEFITQRSRPLWNGEDIFFSL 186          
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: A0A7S0WN27_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WN27_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 2.830e-15
Identity = 58/181 (32.04%), Postives = 95/181 (52.49%), Query Frame = 1
Query:    1 QLSVILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVLQT--AND-LGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLSIHGIWGRWPTRSNPYRPGEIPPDFTRAPIVLTRAFVVNKAHMGTFWVAAPHLDFLAASATPRWNGEDILFSL 534
            + +V++M++KRP  V +I+        V E+IV++ N    D T    + PK+  +    AND  G++TR+     A++E ++  DDDVL     I++LL    R+P  +H   GR P     Y   +   +   A +VLT+  V ++     ++  AP ++ +A +ATP WNGEDI  SL
Sbjct:   20 EATVVIMNWKRPDNVRQILSAMVNYRAVKEIIVWHCN---PD-TVFDYAHPKVRNIDEPEANDKFGLNTRYQGCLRASYEQVITVDDDVLPPEITINQLLLAKQRNPQCLHSTHGRNPQPGCVYNFKQT--NDGPAQVVLTKVMVTDRRFCKAYFEYAPVMEDVARNATPYWNGEDIFMSL 194          
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: A0A0S8DZM1_9BACT (Glyco_transf_64 domain-containing protein n=1 Tax=Phycisphaerae bacterium SG8_4 TaxID=1703409 RepID=A0A0S8DZM1_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 6.580e-12
Identity = 51/177 (28.81%), Postives = 90/177 (50.85%), Query Frame = 1
Query:    4 LSVILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVLQTANDLGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLSIHGIWGRWPTRSNPYRPGEIPPDFTRAPIVLTRAFVVNKAHMGTFWVAAPHLDFLAASATPRWNGEDILFSL 534
            +S +L+S++RP  +E IV+      ++ E++V+NNN    ++    +     +V+ ++++     R+    L  H  I FQDDD+L+S E + K++S +   P  I+G  GR   R   Y P  +   +    I+L ++ + +K     F+  AP  + LA    P   G+DI FSL
Sbjct:    3 ISAVLLSWRRPTNIEPIVRTLRKHPLIKEVLVWNNN---PEINLKGDGA---IVINSSHNFFPFVRYCLVPLTKHPLIWFQDDDLLISPEQLDKIVSAYSTAPNRIYGCRGRNIVRGR-YAPAIV---YGECDIILGQSMLFHKK---LFYEVAPEFNALA----PNERGDDIAFSL 162          
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: Q2SLD6_HAHCH (Uncharacterized protein n=2 Tax=Hahella chejuensis TaxID=158327 RepID=Q2SLD6_HAHCH)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-8
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 1
Query:    4 LSVILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVLQTANDLGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLSIHGIWGR 339
            ++ IL+S+ RP+ V+KI    A    +G++IV NNN  + DL    E  PKL ++Q         RF      +    L  DDD+ LS E I  LL      P   HG+WG+
Sbjct:   25 VTAILLSYLRPENVQKIFGQLAKSKYIGKIIVSNNNP-DIDLCLYIEQHPKLSLIQQVVHYPPWIRFEFAAHDSANYFLSIDDDIFLSLEQIDLLLERLFNGPAVPHGVWGQ 135          
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: A0A525KGT8_BRASZ (Uncharacterized protein (Fragment) n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525KGT8_BRASZ)

HSP 1 Score: 59.7 bits (143), Expect = 1.540e-8
Identity = 33/108 (30.56%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    4 LSVILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVLQTANDLGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLSIHG 327
            +S IL+S++RP+ + +IV        +GE++V+NNN  + +LT     +P   ++ +  + G   R+    LA ++ I FQDDD+L+S     KL + + +    I+G
Sbjct:    1 MSAILLSWRRPENIARIVAELRTWKRIGEIMVWNNNP-DQNLT-----LPGATIINSGRNFGCLARYGLVALADNDTIWFQDDDLLVSEAQFEKLFASYLKDAGRIYG 102          
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: UPI00035E6313 (hypothetical protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00035E6313)

HSP 1 Score: 61.6 bits (148), Expect = 3.640e-8
Identity = 50/182 (27.47%), Postives = 79/182 (43.41%), Query Frame = 1
Query:    1 QLSVILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVLQTANDLGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLSIHGIWGRWPTRSN---PYRPGEIPPDFTRAPIVLTRAFVVNKAHMGTFWVAAPHLDFLAASATPRWNGEDILFSLS 537
            +++ IL+S+ RP  +++I    A  + + ++IV NNN  + DL    +  PKL + Q         RF        E  +  DDD+ L+ E +  L+     +P S HG+WG+   ++N     R      D      VL RA+   K H    +    HL    A     +  ED+L S S
Sbjct:    6 KVTAILLSYLRPDNIQRIFDALAASEHISKVIVSNNNP-DIDLREYLKDHPKLSLRQQIVHYPPWIRFEFAVHDDAEYFISVDDDLFLTTEQVDSLIQSLFNNPSSPHGVWGQRIVKTNIGLQVRDNIFGEDGRVD--VLNRAYACTKEHAINSFTLLKHLGINHARKIGMF--EDVLLSFS 182          
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: UPI001C1F0957 (hypothetical protein n=1 Tax=Hahella sp. HN01 TaxID=2847262 RepID=UPI001C1F0957)

HSP 1 Score: 59.7 bits (143), Expect = 1.820e-7
Identity = 38/115 (33.04%), Postives = 57/115 (49.57%), Query Frame = 1
Query:    4 LSVILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVLQTANDLGVHTRFSAGTLATHEAILF---QDDDVLLSAEAIHKLLSEFHRHPLSIHGIWGR 339
            ++ IL+S+ RP+ +++I    A    + ++IV NNN  + DL    E  PKL ++Q         RF     A HE   +    DDD+ LS E I  LL      P+  HG+WG+
Sbjct:   10 VTAILLSYLRPENIQRIFGQLAKSKYIDKIIVSNNNP-DVDLCVYIEQHPKLTLIQQVVHYPPWIRFE---FAAHEPANYFFSVDDDIFLSVEQIDLLLERLFDRPVVPHGVWGQ 120          
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Match: W6TVM1_9SPHI (Uncharacterized protein n=1 Tax=Pedobacter sp. V48 TaxID=509635 RepID=W6TVM1_9SPHI)

HSP 1 Score: 52.0 bits (123), Expect = 8.260e-5
Identity = 32/112 (28.57%), Postives = 53/112 (47.32%), Query Frame = 1
Query:    7 SVILMSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAE-SIPKLLVLQTANDLGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLSIHGIWGR 339
            + I++S+KRPQ +++I +    +  V +LI+ NNN  E DL    +    + +++    D G   R+    +   E     DDD+ LS   I  L+      P   HG WG+
Sbjct:    6 TAIVLSYKRPQNIQRICETILSVSQVCKLILSNNNP-EVDLKSYVKIDDNRFVLINQERDSGCIKRYELAYVEHSEYYFCIDDDLFLSKTQIQYLMVNLINDPFRPHGFWGQ 116          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76012.17929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A518CCC1_9BACT3.850e-2335.84Glycosyl transferase family 64 domain protein n=1 ... [more]
A0A5J4YB26_9CHLO5.620e-2135.96Glyco_transf_64 domain-containing protein n=1 Tax=... [more]
A0A7R9V959_9CHLO6.690e-1633.69Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S0WN27_9CHLO2.830e-1532.04Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A0S8DZM1_9BACT6.580e-1228.81Glyco_transf_64 domain-containing protein n=1 Tax=... [more]
Q2SLD6_HAHCH1.180e-834.82Uncharacterized protein n=2 Tax=Hahella chejuensis... [more]
A0A525KGT8_BRASZ1.540e-830.56Uncharacterized protein (Fragment) n=1 Tax=Bradyrh... [more]
UPI00035E63133.640e-827.47hypothetical protein n=1 Tax=Hahella ganghwensis T... [more]
UPI001C1F09571.820e-733.04hypothetical protein n=1 Tax=Hahella sp. HN01 TaxI... [more]
W6TVM1_9SPHI8.260e-528.57Uncharacterized protein n=1 Tax=Pedobacter sp. V48... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76012contigM-pyrifera_M_contig76012:149..694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog349521.HCH_01687
Hectar predicted targeting categoryother localisation
EggNOG OGs2CKF9@1,348E8@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size546
Cds size528
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.1762981-CDS-M-pyrifera_M_contig76012:148..6761622816659.1762981-CDS-M-pyrifera_M_contig76012:148..676Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76012 149..676 -
1692278103.5814433-CDS-M-pyrifera_M_contig76012:148..6761692278103.5814433-CDS-M-pyrifera_M_contig76012:148..676Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76012 149..676 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.1882741-UTR-M-pyrifera_M_contig76012:676..6941622816659.1882741-UTR-M-pyrifera_M_contig76012:676..694Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76012 677..694 -
1692278103.596222-UTR-M-pyrifera_M_contig76012:676..6941692278103.596222-UTR-M-pyrifera_M_contig76012:676..694Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76012 677..694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76012.17929.1prot_M-pyrifera_M_contig76012.17929.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76012 149..676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76012.17929.1

>prot_M-pyrifera_M_contig76012.17929.1 ID=prot_M-pyrifera_M_contig76012.17929.1|Name=mRNA_M-pyrifera_M_contig76012.17929.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
MSFKRPQEVEKIVKHYAGLDMVGELIVFNNNLLETDLTPLAESIPKLLVL
QTANDLGVHTRFSAGTLATHEAILFQDDDVLLSAEAIHKLLSEFHRHPLS
IHGIWGRWPTRSNPYRPGEIPPDFTRAPIVLTRAFVVNKAHMGTFWVAAP
HLDFLAASATPRWNGEDILFSLSICA
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mRNA from alignment at M-pyrifera_M_contig76012:149..694-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76012.17929.1 ID=mRNA_M-pyrifera_M_contig76012.17929.1|Name=mRNA_M-pyrifera_M_contig76012.17929.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig76012:149..694- (Macrocystis pyrifera P11B4 male)
CAGCTCTCCGTGATTCTGATGAGCTTCAAGCGCCCGCAGGAGGTGGAGAA GATCGTCAAGCACTACGCGGGGCTGGACATGGTCGGGGAGCTGATCGTGT TCAACAACAACCTCCTGGAAACGGACCTCACCCCATTGGCCGAATCCATT CCCAAGCTCCTGGTGCTGCAAACGGCCAATGACCTCGGTGTGCACACGCG GTTCAGCGCAGGCACGCTGGCGACGCACGAGGCAATCCTGTTCCAGGACG ACGACGTGTTGTTGAGCGCAGAAGCCATCCACAAGCTGCTTTCCGAGTTC CACAGACACCCTCTCTCGATCCACGGCATCTGGGGTAGATGGCCGACACG CTCCAACCCCTACCGCCCCGGAGAAATACCGCCAGACTTTACGAGGGCGC CGATTGTGCTCACGCGCGCCTTTGTGGTGAACAAGGCGCACATGGGCACT TTCTGGGTGGCAGCTCCCCACCTCGACTTCCTTGCGGCCTCAGCCACCCC GCGGTGGAACGGCGAGGACATCCTCTTCTCCCTCTCCATCTGCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76012:149..694-

>mRNA_M-pyrifera_M_contig76012.17929.1 ID=mRNA_M-pyrifera_M_contig76012.17929.1|Name=mRNA_M-pyrifera_M_contig76012.17929.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig76012:149..694- (Macrocystis pyrifera P11B4 male)
ATGAGCTTCAAGCGCCCGCAGGAGGTGGAGAAGATCGTCAAGCACTACGC
GGGGCTGGACATGGTCGGGGAGCTGATCGTGTTCAACAACAACCTCCTGG
AAACGGACCTCACCCCATTGGCCGAATCCATTCCCAAGCTCCTGGTGCTG
CAAACGGCCAATGACCTCGGTGTGCACACGCGGTTCAGCGCAGGCACGCT
GGCGACGCACGAGGCAATCCTGTTCCAGGACGACGACGTGTTGTTGAGCG
CAGAAGCCATCCACAAGCTGCTTTCCGAGTTCCACAGACACCCTCTCTCG
ATCCACGGCATCTGGGGTAGATGGCCGACACGCTCCAACCCCTACCGCCC
CGGAGAAATACCGCCAGACTTTACGAGGGCGCCGATTGTGCTCACGCGCG
CCTTTGTGGTGAACAAGGCGCACATGGGCACTTTCTGGGTGGCAGCTCCC
CACCTCGACTTCCTTGCGGCCTCAGCCACCCCGCGGTGGAACGGCGAGGA
CATCCTCTTCTCCCTCTCCATCTGCGCCATGAGCTTCAAGCGCCCGCAGG
AGGTGGAGAAGATCGTCAAGCACTACGCGGGGCTGGACATGGTCGGGGAG
CTGATCGTGTTCAACAACAACCTCCTGGAAACGGACCTCACCCCATTGGC
CGAATCCATTCCCAAGCTCCTGGTGCTGCAAACGGCCAATGACCTCGGTG
TGCACACGCGGTTCAGCGCAGGCACGCTGGCGACGCACGAGGCAATCCTG
TTCCAGGACGACGACGTGTTGTTGAGCGCAGAAGCCATCCACAAGCTGCT
TTCCGAGTTCCACAGACACCCTCTCTCGATCCACGGCATCTGGGGTAGAT
GGCCGACACGCTCCAACCCCTACCGCCCCGGAGAAATACCGCCAGACTTT
ACGAGGGCGCCGATTGTGCTCACGCGCGCCTTTGTGGTGAACAAGGCGCA
CATGGGCACTTTCTGGGTGGCAGCTCCCCACCTCGACTTCCTTGCGGCCT
CAGCCACCCCGCGGTGGAACGGCGAGGACATCCTCTTCTCCCTCTCCATC
TGCGCC
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