mRNA_M-pyrifera_M_contig100829.179.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100829.179.1
Unique NamemRNA_M-pyrifera_M_contig100829.179.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A7Y8DIB6_9PSED (Vps62-related protein n=5 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A7Y8DIB6_9PSED)

HSP 1 Score: 53.9 bits (128), Expect = 9.050e-7
Identity = 29/62 (46.77%), Postives = 34/62 (54.84%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCV 186
            L AP GF L+W  S  K     S      WKP+ PEGYVAMG V     G  KPT++ +RCV
Sbjct:   81 LRAPVGFNLIWKNSGKKTRSEFS-----VWKPVPPEGYVAMGMVCCI--GYDKPTLNAVRCV 135          
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A2K9CAE7_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A2K9CAE7_9PSED)

HSP 1 Score: 52.8 bits (125), Expect = 2.320e-6
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCV 186
            L AP GF LVW  ++ K     S      WKP+ PEGYVAMG V     G  KPT++ +RCV
Sbjct:   81 LRAPVGFNLVWKNAAKKVRSEFS-----VWKPVPPEGYVAMGMVCCI--GYDKPTLNAVRCV 135          
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: UPI001688B067 (Vps62-related protein n=1 Tax=Nostoc sp. FACHB-110 TaxID=2692834 RepID=UPI001688B067)

HSP 1 Score: 52.4 bits (124), Expect = 3.150e-6
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201
            LA PTG+ELVW    DK   S + L   +W+PI P GYVA+G VA       +P++D +RCV    V
Sbjct:   80 LARPTGYELVW---KDKG--SGADLDGAFWRPIPPNGYVALGLVATLNYN--EPSLDEVRCVRQDLV 139          
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A0Q8YCG8_9MICO (Toxin_10 domain-containing protein n=2 Tax=unclassified Terrabacter TaxID=2630222 RepID=A0A0Q8YCG8_9MICO)

HSP 1 Score: 51.2 bits (121), Expect = 8.090e-6
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201
            LAAPTG+  +W         S  +     W+PIAP+GY+AMG V    GG  +P++D +RCV  S V
Sbjct:   90 LAAPTGYTQIWADHG-----SGGNNDGSVWRPIAPDGYIAMGLVVV--GGYNQPSLDAVRCVSQSLV 149          
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A7Y8FCU6_9PSED (Vps62-related protein n=4 Tax=Pseudomonas yamanorum TaxID=515393 RepID=A0A7Y8FCU6_9PSED)

HSP 1 Score: 51.2 bits (121), Expect = 8.110e-6
Identity = 30/67 (44.78%), Postives = 34/67 (50.75%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201
            L AP  F LVW  S  K     S      WKP+ PEGYVAMG V     G  KPT++ +RCV    V
Sbjct:   81 LRAPVDFNLVWKNSGKKVRSECS-----VWKPVPPEGYVAMGMVCCI--GYDKPTLNAIRCVRADLV 140          
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A2T3YY96_9HYPO (Uncharacterized protein n=2 Tax=Trichoderma asperellum TaxID=101201 RepID=A0A2T3YY96_9HYPO)

HSP 1 Score: 50.4 bits (119), Expect = 1.040e-5
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201
            + +PTG+ L+W     K     S     +W+PIAP GYVA+G VA  RGG + P + ++ CV    V
Sbjct:   77 VTSPTGYTLIWKDEKSKADKDGS-----FWRPIAPNGYVALGDVA--RGGWSTPDISDVWCVRADLV 136          
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A0C1WRZ2_PSEFL (Uncharacterized protein n=10 Tax=Pseudomonas TaxID=286 RepID=A0A0C1WRZ2_PSEFL)

HSP 1 Score: 50.1 bits (118), Expect = 2.080e-5
Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201
            L+ PT FELVW  S     +  S      W+PIAP+GYVA+G       G  KP+++ +RCV    V
Sbjct:   98 LSRPTDFELVWKESGSGAAMRTS-----IWRPIAPQGYVALGMTCSSDHG--KPSLNAIRCVRADLV 157          
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A4D9CKR4_MASLA (DUF946 domain-containing protein n=1 Tax=Mastigocladus laminosus UU774 TaxID=1594576 RepID=A0A4D9CKR4_MASLA)

HSP 1 Score: 49.7 bits (117), Expect = 2.830e-5
Identity = 25/67 (37.31%), Postives = 35/67 (52.24%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201
            LA PT +ELVW  +     +        +W+PI P GY+A+G V    G   KP++D +RCV    V
Sbjct:   80 LARPTDYELVWKDTGSGASMEGG-----FWRPIPPNGYLALGLVV--TGNYNKPSLDEVRCVRQDLV 139          
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A2G5NDW5_9PSED (Toxin_10 domain-containing protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A2G5NDW5_9PSED)

HSP 1 Score: 49.7 bits (117), Expect = 2.840e-5
Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201
            L+AP  +ELVW  S  +     +H     W+PI PEGYVA+G V     G  KP+ + +RCV    V
Sbjct:   86 LSAPVEYELVWNDSGSR-----AHTDGAIWRPIPPEGYVALGLVCGT--GHDKPSRNAIRCVRADLV 145          
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: UPI00178848FA (Vps62-related protein n=1 Tax=Pseudomonas gozinkensis TaxID=2774461 RepID=UPI00178848FA)

HSP 1 Score: 49.3 bits (116), Expect = 3.890e-5
Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 1
Query:    1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201
            L+ PT FELVW  S     +  S      W+PIAP+GYVA+G       G  KP+++ +RCV    V
Sbjct:   98 LSRPTDFELVWKESGRGAAMRTS-----IWRPIAPQGYVALGMTCSSDHG--KPSLNAIRCVRADLV 157          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A7Y8DIB6_9PSED9.050e-746.77Vps62-related protein n=5 Tax=unclassified Pseudom... [more]
A0A2K9CAE7_9PSED2.320e-646.77Uncharacterized protein n=2 Tax=Pseudomonas TaxID=... [more]
UPI001688B0673.150e-644.78Vps62-related protein n=1 Tax=Nostoc sp. FACHB-110... [more]
A0A0Q8YCG8_9MICO8.090e-641.79Toxin_10 domain-containing protein n=2 Tax=unclass... [more]
A0A7Y8FCU6_9PSED8.110e-644.78Vps62-related protein n=4 Tax=Pseudomonas yamanoru... [more]
A0A2T3YY96_9HYPO1.040e-538.81Uncharacterized protein n=2 Tax=Trichoderma aspere... [more]
A0A0C1WRZ2_PSEFL2.080e-540.30Uncharacterized protein n=10 Tax=Pseudomonas TaxID... [more]
A0A4D9CKR4_MASLA2.830e-537.31DUF946 domain-containing protein n=1 Tax=Mastigocl... [more]
A0A2G5NDW5_9PSED2.840e-540.30Toxin_10 domain-containing protein n=3 Tax=Pseudom... [more]
UPI00178848FA3.890e-540.30Vps62-related protein n=1 Tax=Pseudomonas gozinken... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100829contigM-pyrifera_M_contig100829:215..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.3619626-CDS-M-pyrifera_M_contig100829:214..2971622815505.3619626-CDS-M-pyrifera_M_contig100829:214..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100829 215..297 +
1692277441.6042452-CDS-M-pyrifera_M_contig100829:214..2971692277441.6042452-CDS-M-pyrifera_M_contig100829:214..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100829 215..297 +
1622815505.3749185-CDS-M-pyrifera_M_contig100829:412..5301622815505.3749185-CDS-M-pyrifera_M_contig100829:412..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100829 413..530 +
1692277441.6166162-CDS-M-pyrifera_M_contig100829:412..5301692277441.6166162-CDS-M-pyrifera_M_contig100829:412..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100829 413..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100829.179.1prot_M-pyrifera_M_contig100829.179.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100829 215..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100829.179.1

>prot_M-pyrifera_M_contig100829.179.1 ID=prot_M-pyrifera_M_contig100829.179.1|Name=mRNA_M-pyrifera_M_contig100829.179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGG
AAKPTVDNLRCVHHSAV
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mRNA from alignment at M-pyrifera_M_contig100829:215..530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100829.179.1 ID=mRNA_M-pyrifera_M_contig100829.179.1|Name=mRNA_M-pyrifera_M_contig100829.179.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=316bp|location=Sequence derived from alignment at M-pyrifera_M_contig100829:215..530+ (Macrocystis pyrifera P11B4 male)
CTCGCAGCCCCGACCGGCTTTGAGCTGGTGTGGCCCGCCTCTTCGGACAA ACGTATGCTCTCTCTCTCTCACCTTTCTCTTTGGTCTCCCTTCCTACGCA CTCCGCTTTCAATCTGTTTCCTGCCTGGATTGCTGGCTTGCCCTGCCATT CGACTGGGTGCTCGATCTGACAATTACAGTCGGCAAGAGCAGGTTCAGCT ACTGGAAGCCCATTGCCCCTGAGGGCTACGTAGCGATGGGCTACGTGGCT TGGCCGAGAGGAGGAGCTGCAAAACCAACCGTCGACAACCTTCGTTGTGT GCACCACTCAGCTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100829:215..530+

>mRNA_M-pyrifera_M_contig100829.179.1 ID=mRNA_M-pyrifera_M_contig100829.179.1|Name=mRNA_M-pyrifera_M_contig100829.179.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig100829:215..530+ (Macrocystis pyrifera P11B4 male)
CTCGCAGCCCCGACCGGCTTTGAGCTGGTGTGGCCCGCCTCTTCGGACAA
ACGTATGCTCTCTCTCTCTCACCTTTCTCTTTGCTCGCAGCCCCGACCGG
CTTTGAGCTGGTGTGGCCCGCCTCTTCGGACAAACGTATGCTCTCTCTCT
CTCACCTTTCTCTTTGCTACTGGAAGCCCATTGCCCCTGAGGGCTACGTA
GCGATGGGCTACGTGGCTTGGCCGAGAGGAGGAGCTGCAAAACCAACCGT
CGACAACCTTCGTTGTGTGCACCACTCAGCTGTGCTACTGGAAGCCCATT
GCCCCTGAGGGCTACGTAGCGATGGGCTACGTGGCTTGGCCGAGAGGAGG
AGCTGCAAAACCAACCGTCGACAACCTTCGTTGTGTGCACCACTCAGCTG
TG
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