mRNA_M-pyrifera_M_contig100829.179.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A7Y8DIB6_9PSED (Vps62-related protein n=5 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A7Y8DIB6_9PSED) HSP 1 Score: 53.9 bits (128), Expect = 9.050e-7 Identity = 29/62 (46.77%), Postives = 34/62 (54.84%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCV 186 L AP GF L+W S K S WKP+ PEGYVAMG V G KPT++ +RCV Sbjct: 81 LRAPVGFNLIWKNSGKKTRSEFS-----VWKPVPPEGYVAMGMVCCI--GYDKPTLNAVRCV 135
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A2K9CAE7_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A2K9CAE7_9PSED) HSP 1 Score: 52.8 bits (125), Expect = 2.320e-6 Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCV 186 L AP GF LVW ++ K S WKP+ PEGYVAMG V G KPT++ +RCV Sbjct: 81 LRAPVGFNLVWKNAAKKVRSEFS-----VWKPVPPEGYVAMGMVCCI--GYDKPTLNAVRCV 135
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: UPI001688B067 (Vps62-related protein n=1 Tax=Nostoc sp. FACHB-110 TaxID=2692834 RepID=UPI001688B067) HSP 1 Score: 52.4 bits (124), Expect = 3.150e-6 Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201 LA PTG+ELVW DK S + L +W+PI P GYVA+G VA +P++D +RCV V Sbjct: 80 LARPTGYELVW---KDKG--SGADLDGAFWRPIPPNGYVALGLVATLNYN--EPSLDEVRCVRQDLV 139
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A0Q8YCG8_9MICO (Toxin_10 domain-containing protein n=2 Tax=unclassified Terrabacter TaxID=2630222 RepID=A0A0Q8YCG8_9MICO) HSP 1 Score: 51.2 bits (121), Expect = 8.090e-6 Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201 LAAPTG+ +W S + W+PIAP+GY+AMG V GG +P++D +RCV S V Sbjct: 90 LAAPTGYTQIWADHG-----SGGNNDGSVWRPIAPDGYIAMGLVVV--GGYNQPSLDAVRCVSQSLV 149
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A7Y8FCU6_9PSED (Vps62-related protein n=4 Tax=Pseudomonas yamanorum TaxID=515393 RepID=A0A7Y8FCU6_9PSED) HSP 1 Score: 51.2 bits (121), Expect = 8.110e-6 Identity = 30/67 (44.78%), Postives = 34/67 (50.75%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201 L AP F LVW S K S WKP+ PEGYVAMG V G KPT++ +RCV V Sbjct: 81 LRAPVDFNLVWKNSGKKVRSECS-----VWKPVPPEGYVAMGMVCCI--GYDKPTLNAIRCVRADLV 140
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A2T3YY96_9HYPO (Uncharacterized protein n=2 Tax=Trichoderma asperellum TaxID=101201 RepID=A0A2T3YY96_9HYPO) HSP 1 Score: 50.4 bits (119), Expect = 1.040e-5 Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201 + +PTG+ L+W K S +W+PIAP GYVA+G VA RGG + P + ++ CV V Sbjct: 77 VTSPTGYTLIWKDEKSKADKDGS-----FWRPIAPNGYVALGDVA--RGGWSTPDISDVWCVRADLV 136
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A0C1WRZ2_PSEFL (Uncharacterized protein n=10 Tax=Pseudomonas TaxID=286 RepID=A0A0C1WRZ2_PSEFL) HSP 1 Score: 50.1 bits (118), Expect = 2.080e-5 Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201 L+ PT FELVW S + S W+PIAP+GYVA+G G KP+++ +RCV V Sbjct: 98 LSRPTDFELVWKESGSGAAMRTS-----IWRPIAPQGYVALGMTCSSDHG--KPSLNAIRCVRADLV 157
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A4D9CKR4_MASLA (DUF946 domain-containing protein n=1 Tax=Mastigocladus laminosus UU774 TaxID=1594576 RepID=A0A4D9CKR4_MASLA) HSP 1 Score: 49.7 bits (117), Expect = 2.830e-5 Identity = 25/67 (37.31%), Postives = 35/67 (52.24%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201 LA PT +ELVW + + +W+PI P GY+A+G V G KP++D +RCV V Sbjct: 80 LARPTDYELVWKDTGSGASMEGG-----FWRPIPPNGYLALGLVV--TGNYNKPSLDEVRCVRQDLV 139
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: A0A2G5NDW5_9PSED (Toxin_10 domain-containing protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A2G5NDW5_9PSED) HSP 1 Score: 49.7 bits (117), Expect = 2.840e-5 Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201 L+AP +ELVW S + +H W+PI PEGYVA+G V G KP+ + +RCV V Sbjct: 86 LSAPVEYELVWNDSGSR-----AHTDGAIWRPIPPEGYVALGLVCGT--GHDKPSRNAIRCVRADLV 145
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Match: UPI00178848FA (Vps62-related protein n=1 Tax=Pseudomonas gozinkensis TaxID=2774461 RepID=UPI00178848FA) HSP 1 Score: 49.3 bits (116), Expect = 3.890e-5 Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 1 Query: 1 LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGAAKPTVDNLRCVHHSAV 201 L+ PT FELVW S + S W+PIAP+GYVA+G G KP+++ +RCV V Sbjct: 98 LSRPTDFELVWKESGRGAAMRTS-----IWRPIAPQGYVALGMTCSSDHG--KPSLNAIRCVRADLV 157 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100829.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig100829.179.1 >prot_M-pyrifera_M_contig100829.179.1 ID=prot_M-pyrifera_M_contig100829.179.1|Name=mRNA_M-pyrifera_M_contig100829.179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp LAAPTGFELVWPASSDKRMLSLSHLSLCYWKPIAPEGYVAMGYVAWPRGGback to top mRNA from alignment at M-pyrifera_M_contig100829:215..530+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig100829.179.1 ID=mRNA_M-pyrifera_M_contig100829.179.1|Name=mRNA_M-pyrifera_M_contig100829.179.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=316bp|location=Sequence derived from alignment at M-pyrifera_M_contig100829:215..530+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig100829:215..530+ >mRNA_M-pyrifera_M_contig100829.179.1 ID=mRNA_M-pyrifera_M_contig100829.179.1|Name=mRNA_M-pyrifera_M_contig100829.179.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig100829:215..530+ (Macrocystis pyrifera P11B4 male)back to top |