mRNA_M-pyrifera_M_contig758.17877.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig758.17877.1
Unique NamemRNA_M-pyrifera_M_contig758.17877.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig758.17877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig758contigM-pyrifera_M_contig758:24419..24991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size573
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig758.17877.1prot_M-pyrifera_M_contig758.17877.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig758 24434..24745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.1912196-UTR-M-pyrifera_M_contig758:24418..244331622816656.1912196-UTR-M-pyrifera_M_contig758:24418..24433Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig758 24419..24433 +
1692278101.8493047-UTR-M-pyrifera_M_contig758:24418..244331692278101.8493047-UTR-M-pyrifera_M_contig758:24418..24433Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig758 24419..24433 +
1622816656.2186997-UTR-M-pyrifera_M_contig758:24745..249911622816656.2186997-UTR-M-pyrifera_M_contig758:24745..24991Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig758 24746..24991 +
1692278101.8760881-UTR-M-pyrifera_M_contig758:24745..249911692278101.8760881-UTR-M-pyrifera_M_contig758:24745..24991Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig758 24746..24991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.2040834-CDS-M-pyrifera_M_contig758:24433..247451622816656.2040834-CDS-M-pyrifera_M_contig758:24433..24745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig758 24434..24745 +
1692278101.8647103-CDS-M-pyrifera_M_contig758:24433..247451692278101.8647103-CDS-M-pyrifera_M_contig758:24433..24745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig758 24434..24745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig758.17877.1

>prot_M-pyrifera_M_contig758.17877.1 ID=prot_M-pyrifera_M_contig758.17877.1|Name=mRNA_M-pyrifera_M_contig758.17877.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MLDLRFCNRELRPLEKFLRLFQDTMRRVCGPSNMLSRLGQDVNIVMLPQR
DRLFGEKRGRNEQTKRVFTTAYCCCCSGRCSYVLCWYCCVAGVVANFLLT
LLA*
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mRNA from alignment at M-pyrifera_M_contig758:24419..24991+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig758.17877.1 ID=mRNA_M-pyrifera_M_contig758.17877.1|Name=mRNA_M-pyrifera_M_contig758.17877.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=573bp|location=Sequence derived from alignment at M-pyrifera_M_contig758:24419..24991+ (Macrocystis pyrifera P11B4 male)
CAAAATTGTTTGAATATGCTTGACTTGAGGTTCTGTAACCGTGAACTCCG
CCCGCTTGAGAAATTTCTCCGACTGTTTCAGGATACTATGAGGCGTGTTT
GTGGACCTTCAAACATGCTGTCCAGGCTGGGCCAAGATGTCAACATTGTC
ATGCTGCCTCAGCGAGATCGATTGTTCGGGGAAAAGCGAGGACGAAACGA
ACAAACAAAACGCGTTTTTACAACAGCGTATTGCTGTTGCTGTTCAGGAC
GTTGCTCGTACGTTCTCTGTTGGTATTGTTGTGTTGCTGGTGTCGTTGCC
AATTTTCTTCTGACGTTGTTAGCTTGATGTTGTCGTTCAAATTACTGATG
TAGTTGTGAGCTATATTGTAATTTTGTTGCGGTAGGATAGACGGGTCACA
CGAAAATGAAAACGGACGGACGGCAATGGTTGGCCCCCCTCTGGTCATCG
TATCCTGGCCGTCGGAAGTCGTACCTAGACGCCTCTTGATGGTGGTGGTG
GTGGTTATGGTGGTGGTGCAAAGAAGCGTGCACCACGCGGCGTTTTTTTT
TTGTGGTTTTATGTCCTCCGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig758:24419..24991+

>mRNA_M-pyrifera_M_contig758.17877.1 ID=mRNA_M-pyrifera_M_contig758.17877.1|Name=mRNA_M-pyrifera_M_contig758.17877.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig758:24419..24991+ (Macrocystis pyrifera P11B4 male)
ATGCTTGACTTGAGGTTCTGTAACCGTGAACTCCGCCCGCTTGAGAAATT
TCTCCGACTGTTTCAGGATACTATGAGGCGTGTTTGTGGACCTTCAAACA
TGCTGTCCAGGCTGGGCCAAGATGTCAACATTGTCATGCTGCCTCAGCGA
GATCGATTGTTCGGGGAAAAGCGAGGACGAAACGAACAAACAAAACGCGT
TTTTACAACAGCGTATTGCTGTTGCTGTTCAGGACGTTGCTCGTACGTTC
TCTGTTGGTATTGTTGTGTTGCTGGTGTCGTTGCCAATTTTCTTCTGACG
TTGTTAGCTTGAATGCTTGACTTGAGGTTCTGTAACCGTGAACTCCGCCC
GCTTGAGAAATTTCTCCGACTGTTTCAGGATACTATGAGGCGTGTTTGTG
GACCTTCAAACATGCTGTCCAGGCTGGGCCAAGATGTCAACATTGTCATG
CTGCCTCAGCGAGATCGATTGTTCGGGGAAAAGCGAGGACGAAACGAACA
AACAAAACGCGTTTTTACAACAGCGTATTGCTGTTGCTGTTCAGGACGTT
GCTCGTACGTTCTCTGTTGGTATTGTTGTGTTGCTGGTGTCGTTGCCAAT
TTTCTTCTGACGTTGTTAGCTTGA
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