mRNA_M-pyrifera_M_contig7578.17874.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7578.17874.1
Unique NamemRNA_M-pyrifera_M_contig7578.17874.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7578.17874.1 vs. uniprot
Match: D8LI69_ECTSI (U-box domain containing protein, expressed n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI69_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 5.680e-104
Identity = 335/398 (84.17%), Postives = 345/398 (86.68%), Query Frame = 1
Query:    1 QANVRDGQYDATLLHWAVNEGHTPTVEHLLACGADVRLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNSRDASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKDADGNTPGSTFHASVPEEARKGIRAAMESGPASDDSVVRAATVSSELLLETLHACRSWGELFENRHFDVLSKECQEHRERLRGVIQGLADQGKAEGLEPCLKAMDLLNSALGLHEDMRSGTKPVPLKPSGGRVGATAGAXXXXXXXXXXXXXXXXXXXXXXGRHECGGGAPPRAGGEGRESVDLQEFLSATGGXXXXXXXXXXXXXXXXXXXXXXXSSG-ASLRLYQLPAVREACGGFDPKRCIGEGGFGKVRKGRGLG 1191
            +AN RD QYDATLLHWAVNEGH PTVEHLLACGADVRL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    DAS R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ADGN PGSTFH SVPEEA + IR+AM+ GPAS D VVRAATVSSELLLETL ACRSWGELFENRHFDVLSKECQEHRERLRGVIQGLADQGKAEGLEPCLKAMDLLNSALGLHEDMRSGTKPVPL   G         XXXXXXXXXXXXXXXXXXXXX G  + GG  PPRAGGE R S +L++FLS  G XXXXXXXXXXXXXXXXXXXXXXX    ASLRLYQLPAVREACGGFD KRCIGEGGFGKV +G  +G
Sbjct:   30 KANARDSQYDATLLHWAVNEGHMPTVEHLLACGADVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASNRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGNIPGSTFHHSVPEEAIRDIRSAMQRGPASGDGVVRAATVSSELLLETLRACRSWGELFENRHFDVLSKECQEHRERLRGVIQGLADQGKAEGLEPCLKAMDLLNSALGLHEDMRSGTKPVPL--GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGTGDSGG--PPRAGGEHRGSEELRDFLSTEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXASLRLYQLPAVREACGGFDQKRCIGEGGFGKVYRGSMMG 423          
BLAST of mRNA_M-pyrifera_M_contig7578.17874.1 vs. uniprot
Match: A0A6H5KWH5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH5_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 4.230e-85
Identity = 295/397 (74.31%), Postives = 302/397 (76.07%), Query Frame = 1
Query:    1 QANVRDGQYDATLLHWAVNEGHTPTVEHLLACGADVRLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNSRDASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKDADGNTPGSTFHASVPEEARKGIRAAMESGPASDDSVVRAATVSSELLLETLHACRSWGELFENRHFDVLSKECQEHRERLRGVIQGLADQGKAEGLEPCLKAMDLLNSALGLHEDMRSGTKPVPLKPSGGRVGATAGAXXXXXXXXXXXXXXXXXXXXXXGRHECGGGAPPRAGGEGRESVDLQEFLSATGGXXXXXXXXXXXXXXXXXXXXXXXSSGASLRLYQLPAVREACGGFDPKRCIGEGGFGKVRKGRGLG 1191
            +AN RD QYDATLLHWAVNEGH PTVEHLLACGADVRL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    DAS R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ADGN PGSTFH SVPEEA + IR+A++ GPAS D VVRAATVSSELLLETL ACRSWGELFENRHFDVLSKECQEHRERLRGVIQGLADQGKAEGLEPCLKAMDLLNSALGLHEDMRSGTKPVPL                                                GG                   XXXXXXXXXXXXXXXXXXXXX   ASLRLYQLPAVREACGGFD KRCIGEGGFGKV +G  +G
Sbjct:   30 KANARDSQYDATLLHWAVNEGHMPTVEHLLACGADVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASNRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGNIPGSTFHHSVPEEAIRDIRSALQRGPASGDGVVRAATVSSELLLETLRACRSWGELFENRHFDVLSKECQEHRERLRGVIQGLADQGKAEGLEPCLKAMDLLNSALGLHEDMRSGTKPVPL------------------------------------------------GGXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXASLRLYQLPAVREACGGFDQKRCIGEGGFGKVYRGSMMG 374          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7578.17874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI69_ECTSI5.680e-10484.17U-box domain containing protein, expressed n=1 Tax... [more]
A0A6H5KWH5_9PHAE4.230e-8574.31Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7578contigM-pyrifera_M_contig7578:4719..12669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.6
Seed ortholog evalue1.3e-88
Seed eggNOG ortholog2880.D8LI69
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0515@1,COG0666@1,KOG0504@2759,KOG1187@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1191
Cds size1191
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.0284803-CDS-M-pyrifera_M_contig7578:4718..48461622816656.0284803-CDS-M-pyrifera_M_contig7578:4718..4846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 4719..4846 +
1692278101.7402642-CDS-M-pyrifera_M_contig7578:4718..48461692278101.7402642-CDS-M-pyrifera_M_contig7578:4718..4846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 4719..4846 +
1622816656.040605-CDS-M-pyrifera_M_contig7578:6586..66851622816656.040605-CDS-M-pyrifera_M_contig7578:6586..6685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 6587..6685 +
1692278101.7541692-CDS-M-pyrifera_M_contig7578:6586..66851692278101.7541692-CDS-M-pyrifera_M_contig7578:6586..6685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 6587..6685 +
1622816656.0520887-CDS-M-pyrifera_M_contig7578:7432..76731622816656.0520887-CDS-M-pyrifera_M_contig7578:7432..7673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 7433..7673 +
1692278101.7635927-CDS-M-pyrifera_M_contig7578:7432..76731692278101.7635927-CDS-M-pyrifera_M_contig7578:7432..7673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 7433..7673 +
1622816656.066577-CDS-M-pyrifera_M_contig7578:9119..92571622816656.066577-CDS-M-pyrifera_M_contig7578:9119..9257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 9120..9257 +
1692278101.773396-CDS-M-pyrifera_M_contig7578:9119..92571692278101.773396-CDS-M-pyrifera_M_contig7578:9119..9257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 9120..9257 +
1622816656.079319-CDS-M-pyrifera_M_contig7578:10366..104501622816656.079319-CDS-M-pyrifera_M_contig7578:10366..10450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 10367..10450 +
1692278101.7848809-CDS-M-pyrifera_M_contig7578:10366..104501692278101.7848809-CDS-M-pyrifera_M_contig7578:10366..10450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 10367..10450 +
1622816656.0900888-CDS-M-pyrifera_M_contig7578:12132..124561622816656.0900888-CDS-M-pyrifera_M_contig7578:12132..12456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 12133..12456 +
1692278101.7957742-CDS-M-pyrifera_M_contig7578:12132..124561692278101.7957742-CDS-M-pyrifera_M_contig7578:12132..12456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 12133..12456 +
1622816656.1007626-CDS-M-pyrifera_M_contig7578:12492..126691622816656.1007626-CDS-M-pyrifera_M_contig7578:12492..12669Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 12493..12669 +
1692278101.8067458-CDS-M-pyrifera_M_contig7578:12492..126691692278101.8067458-CDS-M-pyrifera_M_contig7578:12492..12669Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7578 12493..12669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7578.17874.1prot_M-pyrifera_M_contig7578.17874.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7578 4719..12669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7578.17874.1

>prot_M-pyrifera_M_contig7578.17874.1 ID=prot_M-pyrifera_M_contig7578.17874.1|Name=mRNA_M-pyrifera_M_contig7578.17874.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=397bp
QANVRDGQYDATLLHWAVNEGHTPTVEHLLACGADVRLTDGKHSATPLHW
AAAKGHVFVVRLLMMQEADVNSRDASKRTPLHWAAGNGQLGVIRELLFWG
ARVDCTDAWRKVPLHWAAFRGHVASVRELVGKGSRVGQKDADGNTPGSTF
HASVPEEARKGIRAAMESGPASDDSVVRAATVSSELLLETLHACRSWGEL
FENRHFDVLSKECQEHRERLRGVIQGLADQGKAEGLEPCLKAMDLLNSAL
GLHEDMRSGTKPVPLKPSGGRVGATAGASASASASAGSSSSPSSGGGGGH
GRHECGGGAPPRAGGEGRESVDLQEFLSATGGGGGGTGRGGKGAPGGGGG
AAPASSSGASLRLYQLPAVREACGGFDPKRCIGEGGFGKVRKGRGLG
back to top

mRNA from alignment at M-pyrifera_M_contig7578:4719..12669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7578.17874.1 ID=mRNA_M-pyrifera_M_contig7578.17874.1|Name=mRNA_M-pyrifera_M_contig7578.17874.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7951bp|location=Sequence derived from alignment at M-pyrifera_M_contig7578:4719..12669+ (Macrocystis pyrifera P11B4 male)
CAGGCTAACGTGCGAGATGGCCAGTATGACGCGACTCTGCTTCACTGGGC GGTGAACGAGGGCCACACCCCAACGGTGGAGCACCTGTTGGCATGTGGCG CGGATGTTCGCCTGACAGACGGCAAACAGTGAGTACAACTTTGCACTAGG GAATAGAGCTGGACGCTCCGCCGCAATGATGGGGGAGGGGCCATGATTTG GTAGTACGAGTAACAGATCAGTGGGCCACCGTGCAGTGTACGGATGTAGT TGGCGATGGGCCTACGCGTGTTCTACATGGCTCTCGCCCGAGGTGTGCTG CTCCGCGCTAAATTTCTCTCAAAACCCTTGAATAGTCGGTCGACATCCTA GCTATAATAGGTTAGCATGATACCTGATACCAGTACCTGGCAACATTTAC CGTATAACACGCACGACAAGCACCCACCCCTGGACGGATTTCCAAGCTGT GATTATCGGCAGCGGGGAGGATGGGCATACAGTAGTGCCGAGCGATGCGT CTATGGAAGGATGGCGACGAGACATTTCCGAAGCCGCTACTTTATTTGTG TGTCTCCCTTGAGCCCGAACCCCCCTCCCCTCTTTTTGGAGAAAAACAAA CAGCCCTTAGCTTCATGGAAGGGTGTGTGTTGCCTTGCGTGTCATAAGGT ATTGACATGCCCCAGGACCGCTTCGTACCGCATCTCACCGCATCTGATGG CACCACGCCGCACCGTACGGGACGAGTAAACTAAGAGAAAGCCACGTTGC CTTGCCCTCTATGAGAGCACGCGGTGGTACGCTACTGCTTTTGCTAGTGC TACTCGTTCTGCTGATGTGTTTCAGCTCTCAAAAGGAGCGCGGGGGAGGG CGGGGGGGGCACGCGTGTAAGCAGCGGCGACCGGTTAAGTAAGGGGGCTC ATGAACTGTGACATTTCGCGCTCAGCGCGCGACAAGAAACGGATATTCTA AAATTAAAGTGGTGCCAGGCACTTCATTCACCTGGGCTGCTGTGCTGCTG TTCGTTCGCAACTAATTCGGGGGACCATAGTAAATAGGACCAAATGTTAG TAAAAATAGGCAGACATATAGGTTTTTGTGTGTACCGTAGGTCCTATTAA CTATGCCCCCCCGTGATAGTCGAGCTGGAGGTTGTCGATCTCGACGCGAC TGGCAATGACTTGCGGGTTTCGGGGTTGCTTCCTGTCGCTTGCAGAGATC GAGAGACGTAGGCAACAACTGTGTTCTGCCATGCCTTAGCCTCCCCCCCT CCCGGCATTCTAGGGGTGCGAGGGTCAATGGTCATACGACTACGACCATG CATGTCATGTCATTAGTACAACCCCGTTCCCCCCGCCGCTACACGCGGTG CAAGCGTTTTCCCCACCCCCGCTTTCGGCGGTGCGAGCGGACCCTGTGCC CCATGTACGTATGGTATTCGACCTGGCGCGCCGCGTCTTGTGTTTGTTCT TCCCGTGTTTTCTGGCTGTGTGTTCTTGCTTGGCGGTGCCTGCGCCGTTC CGTCTTTCTATGACAGCAGACCGATCCTTTGGTCGGTTCAAGATCTCTGT TGTCGTTATTACGTTAGTTTTGGTGTATGAGGGCGGTCAGTGAAGGGGTT GAGCCGTGGTCTCCTGTATGGCATTTTCGTGCTGACGCCGCGTCATGCCA CAAGCAGCCAGCGACCGAGGCGAGAGGGCGCTATATCCTTCTCCCCTTGC TCCCCTCCCGCCCCACCCTCCCGTCTCGAAATGGGTGCGTGGCCAATTGG TCGATGGGAAGGCAGCAATTGTGTACCCCCCCCCCCACACCCCCACACCC CACCCCTCTTCAGCTCGTCTCTTACCCCCCCTCCCTGTGGCACGCCGTTT TTTTTATTTACCGCCCAGCTCTGCTACTCCTCTCCACTGGGCAGCGGCAA AGGGTCACGTGTTCGTCGTGCGGCTGCTGATGATGCAAGAGGCCGATGTC AACAGCAGAGACGCCTCGTGAGTCGCGGTCACCCGGCACCGGTTAGGGTA CCCTTCCCTTCTGTCTTTTCCCATTCCTTCCTTCCTTCCGCTTGGTCCAA CTTGACTCTATGTCTTTTGTTCTGCCGTCCTCCTCGCCCAAAACTGATTT TGCGTCCACATGGACGCTTAGATCACTGCAAAAATATCTCCCTCTCTAAT TCCAAGTAGTTTTTCCCCACAACGTGATTGCGATTCCAAAGGCGGTATAT CGCGTGTGTGACCCCTCCCCCACCTCCACCACCACCCCCTCATCCCACTG CGTCTCCCCATTCTCTACGTACGTGCCTGGCTCTATTTACCTATACCTGG TGTTGAGTGGCATGCAAGGTTGTCCTCACAACGTGGGGGCAGTTCCGAAA GCGGTACATGGCGTTTGTGATCCCTTCCCGCCCCACCCCTCCCGCTTTCC GTTGCGCCTCCCCATTCTCTACGTATTAGGCTCTAATTCCCTTTACCAGG TATTATTTTCATGCGTGAATATATTAACATACCCTCCCAGACGCACGCGT CCTCCCCCCCCCCCCTCCATTCGACTGCGCCTCCCCATTCTCTATGAGTA ATTCGCTCTATTTCCACATATATTTTATGCAGACATACACTTGTTTTCAC CCCCCTCCCACACGCACGCGTATGCCCCTCTCGCTCATGACGTCTGTTGG CTCTCTCTTTCCACAATGTACCGGTTACATTTATGTATATCTGTACATTT GCGACGGAAAACAGCAAGCGCACCCCGCTCCATTGGGCAGCCGGCAACGG CCAGCTGGGGGTGATCCGCGAGCTGCTGTTTTGGGGGGCGCGGGTGGACT GCACGGACGCGTGGAGAAAGGTCCCGCTTCACTGGGCGGCTTTCAGGGGC CACGTGGCCAGCGTGCGGGAGCTCGTCGGTAAAGGTTCGCGCGTCGGTCA GAAGGATGCCGACGGAAACACACCGGGCAGCACCTTTCATGCCAGCGTAC CGGAGGTGTGTTTTGTTTGGCAGGGTCGTGGTAGTGATGTGGTTGGTGGC GGTGGTGGCGGTGGTGGTGGTGGTGGTGGTAGTGGTAGTGGTGATGGTGA TGTGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGTTGTGG TGGTGGTTGTGGTAGTGGTGGTGGCGGTGGCGGTTTTAGTGGTGGTGGTG ATGGTGATGATGGCGGTGGTATAGTAGTGTTGGTGTTGGTGTTGGTTGTG GTGGTGGTGGGGTAGTGGGGTTTTGTTGGGGGGTTGGTTGTGGTTGAGGT GGTAGTTGTGGTGGTGATGCCTTGGTGGGTGATGGCGGAGGTGGGGGGCT GCGGCGTGATTGGTGATAGTTGGCGCGCGCGCACTTTCGTTTTTGACTTT TGAGTCGGTACAAACCACACCAAACCAAACCGAAACAACACCAAACCAAA ACAAAACCAAACCGAGAAACCTAACCAAGAAGCCAAACCAAAACCACCCC GAACCGAACCCGACCAAACTGAAGTGAACTGTGCTAAACCGAACCGAACC GAACCGAACCGAACTAAACCGATTTTATTCTTGTGCTCCCCCCGCCATAT CTAAGCCGGCGTCCCCGGTGGCTTGGTAGGTGGTCGGCGTGCCCATCAAG ATCAATTTGGTGGCTTCGAGTCTCCGAGTGCATGCTCGTACGACTTTTTC TTGCATAAAATTGATTAGCGGAAAGCGCGAGAGCGTGAGTTAGCTACATT CGATGAAATCGACGAGCAGTGGGAATGTTGGACCCTATGCGCGACAAAAA GAAGGCACGTACCGGGGGGGAGAAGGGACGACACCTTTGGCCACGGCTTG TCCGGTAGATCGCTGAGGGTAAAACCTCCTACGAGTTGGGCTGGAAAGTA AAAGTGATGATGAGTTGGGTTGGCGTAGGTTGGCAGCGACACTGTAACGC ATGCTGCTCACTACTTGAGCTTGACGACCAAGGTACCGTTTTTTTTCTTG GCGGTCGGTGACAGCTAGTGGTAGAGTTGGATGGTTAGTGCGGGGTGGAG AACCTTTACTCCACGTAAGGGGAATGATCGTATCACATACTGTTAGTTTT GACGGTAAGGCGCTCAAGAGGCAGCTACATAACTGGTAGTACTGCCATTG CTGTGTCTGGAAGTGGCCACACCGCAAATTAAATCAAGTCATTGAAGCTG TCATCCTTATGCAAGTCCGCCTCGCCAGTGGTTCTCAATAAGATGCGGCT AACCCTTCATGCGACTCGCCGAATACCTCGCGGCGCTTCGCGCTTGGCGC CAACAATGTCTGCCTGGTCGGTGAAAGCCCGGCGTGCTCCATCCCGGTAG GGATGCGGGCGTCTTGGGTCATACGACTAATGCCATGCATGATGTCGAGT ACCCCCCCCCTCCACCCGCCCCCCATCCCCGCTTGTCCCCGGCCTGTGCA GGAGGCTAGAAAGGGGATCCGCGCGGCGATGGAGAGCGGTCCGGCGTCCG ACGACAGCGTGGTCAGGGCGGCGACGGTTTCGTCCGAGCTTTTGCTGGAA ACTCTCCACGCATGCCGGTCGTGGGGTGAGCTTTTTGAGGTGAGGCCATC GAAGGGGGTGTGTGGGTGGTTTCATGACTCTTTTTTTGGTTTTGCTACTG GTGGTGGGAGAGATTCGGGAGGGGAGGATATAAGGGGTGGGGGCGCGGGA TGAAGGGGGGGATAGGGGATGGGAGAAGGGCGTCTAGTTTTTTTTTGGTC GGATGAATGGCTTGGTGAGTGTGGACATTGTTGAGAATGCTAGTCTCCGG GATGGGGGGGGGGGGGGGCGTACTCCTTTCATGTGGGAGATTTTCACCTT TGACCACGCGTCCGTTTCCGGACGGGGCGCCCTTTCCCCCCCTTTATGAG AANNNNNNNNNNGGTGGCCGGTGGTCTCTCCTCCGAGCCCTTGCGCCCCC TCCAAAAAAACAAAACCCCCTGGGGACCCCACCAGAGGGGGAGGGGGGGG GGGGGGGGGGGGGGAGTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGCGTACTCATTTCATGTGAGTCATTTTGACCATTGACCACGCAT CGCTTTCGAGACGGAGCACCGTTTCCACTCCTAATAGAGACACCTCCAAC AATTGAGCGCTCATTACGTTGGTTCCATACAAAGTATATCATGTAGAAAC TTGTTGCTATTGCTATCCCCTTCCTGTTTCGCCGCCTGTGGCCACCATCT ACTGTATCTCCTTGGATGGTGATCCTTTTCTCGCTGCTATTTGGTGTAAC AAGTCTGGAGGGGATTGGGGAGGGCAGGGGGAGTGGGGGAGTTGTCGCGT TTTCGTGGAGGCCTCGTGTGGCAGGCAGATGTCTTGTTTCCCTGATGTGC TGTTGGTCTGTAGTCGTGCGGGCATATATATGTACGCGAATCGCGAGTGG AACATAATACAAAATGGTATCTGGTGCGAAAATAGGTGTGTGTTGTGTGG ACTTCATGTCTACTCTTGTGGCTCTTCGTTTCCGCTCTTTATCTCTCCAC GGGGCTGATGCGTGAGCGTCCCCGCTCGTGTGCCGCTTGTTGATGTTGAC TCTTTTCTCCGGTGGTGTGTGCGTGTGCTGTGTTTCTCTCCTTGTTTTGT TTTTTTGCCTCACTGTCGCTTTCTTTTCTTTCCCTTTTCCCGCGAAAGAA TCGCCACTTCGACGTGCTGTCCAAGGAGTGCCAGGAGCACCGAGAGCGCT TGAGGGGCGTTATACAAGGCCTCGCAGATCAGGTACAAAACCAAAAATGC TGGTGTTACGATAGAGGCGGCACCTTTTGGACCAGACTATGTCTGACCGC TGACGGGGCCCCTTAACTCCTTTAGTACCGCAGTCCTGATTTGGGGACAA ACCGGTCTAATTCCAAGTGATTTGTCCCCAAAACGGGACTGCTGTACTAA AAGGGTTAATCCCTTTCAGAAAAGGGTTAATCCCTTTCAGAACTGCCGTC CCGTTTTGGAGACAATCCACTCAAAGTCTAAGTAGTTTGTACCTCAACAC GGGACTGCAGTCCTAAAAGCCGAGGAACTACCCGATGCCGCTGGGAACAT GAGGTGTTTTACACTACAGTACCAGTAAATGTTTTAATAAATTACGAGTG TTGATAGTGATGAGAAGCGAACACGGTGTGCTGAGAGATGTGGGTGGAGC ACTTTGTTGGCCAAATTGTTTCTGACTGAAGGGGCTCCTCGCCTAGGGGA TTGCTCCATGTCACTGCTGTCACTTGGAATGTCACTGCTGTTTTACACTA GTAATAGTTGACAGTCACGGGGGAATATAGTAGTATTTTCTGGGGACCAT AGTATATAGGACCAAATATTGTTGGTAAAAATAGCGAAATGTATATTATT ACGGGGGTCCATAGTTGATAGGACATATGGTATACATAAAAACCTATATA TTTACCTATTTTTTACTACCAAAATTTGGTCCCATTAACTATAGACCCCC GCAATAATAGTTTTTTGTATTTACCGTAGGTCCTAGTTCTTATGCCCCCC CGTAATAGCAGTAATTAGAACCCAAAACGGTGTGCAAGCATGTAGGCATA GGGGGATACCTGTTTTTTTGGGTCCATCGCCGGTTCTGATTACTGTGACC CCCCTCCCCCCCTGTATTAGATTTTGTATATGTACGCAGGCGGTGGAACT ACTGCTGTTAGTCGGATTTCACGTTCATGATTCTTAAGGCAAGTTTCTGG GCGGGGAGGTGTAGGGCTCCTCAAACGACCGAGCCTCGGGAAATAGATGG GCCCACCCCTCTCTACCGCCCCTGGCATTCATCTGTTGTGTGTACGAGAC TATGGTAGCTTACAGTTTTTTTTTTGTTCTTGCTTACACAACCGAATTGC TGCTGTAATTTATTTTCACGGCCGCCGAAGTATTACATATATTGTGTACC CGTATTTGTGCCCCAAGAAACCACCCCCCCCCCCGGGTGGTCATCGATTC GCGTAATAAAAAATATCTTGTCGCGCGCGGCGGTTTTCTGCGGTCGGGCG GCACCTGTTGTGTATATCCAACCTCGGTGGTATGGGGCATATGCCTTTTC GGAACTCCAGGGATACAGTGATACTGGGCGAAACGAGTGTTTGCTCATGT GCATGGCCGCCTAGATAAGACGCATAGGGCATGCCTTACAGAGTGTGCGT TGTTGTTGACTGAGCTGGGTGACGCCAGAGAATCATACAGGTAGACTCAA GCCGGAGGTCGATCGGCACCGTCCGATCGAAGTTCTCCGTTCTTATTGAA AAAAAGCCTCTCCTGTCCGCGCTTACCTTCCCCCCTCCCCCCCCTGCCCC TGCCGCTGCCCCCCCCCCCTACCTCCCACCCCCTCCTCCCCTTCTTCCTT CCCTTGCTCCCCCCCCCCCAAAAAAATAAACGCCACCCCCCTTCAAACAC TCCAAACCCCAAAGGGCAAGGCCGAAGGCTTAGAACCATGCCTGAAAGCG ATGGACCTCCTCAACTCGGCCTTGGGTCTCCACGAGGACATGCGCTCGGG CACTAAACCCGTCCCTCTCAAGCCCAGCGGCGGCAGGGTGGGCGCCACCG CGGGTGCCTCCGCCTCTGCCTCCGCTTCCGCCGGCTCCTCGTCCTCCCCT TCCTCGGGGGGGGGAGGGGGTCACGGGCGCCACGAGTGCGGAGGAGGAGC CCCCCCGAGAGCGGGGGGGGAGGGCAGGGAGTCGGTAGACCTGCAAGAGT TCCTGTCGGCGACCGGGGGCGGGGGGGGTGGCACCGGAGTCGTTGGGTCG GAGGAGGGGGAGGGGGAGTTGGAGCGGGGCGGGAAGGGGGCGCCGGGTGG GGGTGGCGGTGCTGCTCCGGCGTCTTCGTCCGGGGCGTCGCTGAGGCTGT ACCAGCTGCCGGCCGTACGGGAAGCGTGCGGCGGGTTTGATCCGAAGCGG TGCATCGGGGAGGGCGGTTTTGGGAAGGTGAGAAAGGGAAGGGGGCTGGG G
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7578:4719..12669+

>mRNA_M-pyrifera_M_contig7578.17874.1 ID=mRNA_M-pyrifera_M_contig7578.17874.1|Name=mRNA_M-pyrifera_M_contig7578.17874.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2382bp|location=Sequence derived from alignment at M-pyrifera_M_contig7578:4719..12669+ (Macrocystis pyrifera P11B4 male)
CAGGCTAACGTGCGAGATGGCCAGTATGACGCGACTCTGCTTCACTGGGC
GGTGAACGAGGGCCACACCCCAACGGTGGAGCACCTGTTGGCATGTGGCG
CGGATGTTCGCCTGACAGACGGCAAACACAGGCTAACGTGCGAGATGGCC
AGTATGACGCGACTCTGCTTCACTGGGCGGTGAACGAGGGCCACACCCCA
ACGGTGGAGCACCTGTTGGCATGTGGCGCGGATGTTCGCCTGACAGACGG
CAAACACTCTGCTACTCCTCTCCACTGGGCAGCGGCAAAGGGTCACGTGT
TCGTCGTGCGGCTGCTGATGATGCAAGAGGCCGATGTCAACAGCAGAGAC
GCCTCCTCTGCTACTCCTCTCCACTGGGCAGCGGCAAAGGGTCACGTGTT
CGTCGTGCGGCTGCTGATGATGCAAGAGGCCGATGTCAACAGCAGAGACG
CCTCCAAGCGCACCCCGCTCCATTGGGCAGCCGGCAACGGCCAGCTGGGG
GTGATCCGCGAGCTGCTGTTTTGGGGGGCGCGGGTGGACTGCACGGACGC
GTGGAGAAAGGTCCCGCTTCACTGGGCGGCTTTCAGGGGCCACGTGGCCA
GCGTGCGGGAGCTCGTCGGTAAAGGTTCGCGCGTCGGTCAGAAGGATGCC
GACGGAAACACACCGGGCAGCACCTTTCATGCCAGCGTACCGGAGCAAGC
GCACCCCGCTCCATTGGGCAGCCGGCAACGGCCAGCTGGGGGTGATCCGC
GAGCTGCTGTTTTGGGGGGCGCGGGTGGACTGCACGGACGCGTGGAGAAA
GGTCCCGCTTCACTGGGCGGCTTTCAGGGGCCACGTGGCCAGCGTGCGGG
AGCTCGTCGGTAAAGGTTCGCGCGTCGGTCAGAAGGATGCCGACGGAAAC
ACACCGGGCAGCACCTTTCATGCCAGCGTACCGGAGGAGGCTAGAAAGGG
GATCCGCGCGGCGATGGAGAGCGGTCCGGCGTCCGACGACAGCGTGGTCA
GGGCGGCGACGGTTTCGTCCGAGCTTTTGCTGGAAACTCTCCACGCATGC
CGGTCGTGGGGTGAGCTTTTTGAGGAGGCTAGAAAGGGGATCCGCGCGGC
GATGGAGAGCGGTCCGGCGTCCGACGACAGCGTGGTCAGGGCGGCGACGG
TTTCGTCCGAGCTTTTGCTGGAAACTCTCCACGCATGCCGGTCGTGGGGT
GAGCTTTTTGAGAATCGCCACTTCGACGTGCTGTCCAAGGAGTGCCAGGA
GCACCGAGAGCGCTTGAGGGGCGTTATACAAGGCCTCGCAGATCAGAATC
GCCACTTCGACGTGCTGTCCAAGGAGTGCCAGGAGCACCGAGAGCGCTTG
AGGGGCGTTATACAAGGCCTCGCAGATCAGGGCAAGGCCGAAGGCTTAGA
ACCATGCCTGAAAGCGATGGACCTCCTCAACTCGGCCTTGGGTCTCCACG
AGGACATGCGCTCGGGCACTAAACCCGTCCCTCTCAAGCCCAGCGGCGGC
AGGGTGGGCGCCACCGCGGGTGCCTCCGCCTCTGCCTCCGCTTCCGCCGG
CTCCTCGTCCTCCCCTTCCTCGGGGGGGGGAGGGGGTCACGGGCGCCACG
AGTGCGGAGGAGGAGCCCCCCCGAGAGCGGGGGGGGAGGGCAGGGAGTCG
GTAGACCTGCAAGAGTTCCTGTCGGCGACCGGGGGCGGGGGGGGTGGCAC
CGGAGGCAAGGCCGAAGGCTTAGAACCATGCCTGAAAGCGATGGACCTCC
TCAACTCGGCCTTGGGTCTCCACGAGGACATGCGCTCGGGCACTAAACCC
GTCCCTCTCAAGCCCAGCGGCGGCAGGGTGGGCGCCACCGCGGGTGCCTC
CGCCTCTGCCTCCGCTTCCGCCGGCTCCTCGTCCTCCCCTTCCTCGGGGG
GGGGAGGGGGTCACGGGCGCCACGAGTGCGGAGGAGGAGCCCCCCCGAGA
GCGGGGGGGGAGGGCAGGGAGTCGGTAGACCTGCAAGAGTTCCTGTCGGC
GACCGGGGGCGGGGGGGGTGGCACCGGACGGGGCGGGAAGGGGGCGCCGG
GTGGGGGTGGCGGTGCTGCTCCGGCGTCTTCGTCCGGGGCGTCGCTGAGG
CTGTACCAGCTGCCGGCCGTACGGGAAGCGTGCGGCGGGTTTGATCCGAA
GCGGTGCATCGGGGAGGGCGGTTTTGGGAAGGTGAGAAAGGGAAGGGGGC
TGGGGCGGGGCGGGAAGGGGGCGCCGGGTGGGGGTGGCGGTGCTGCTCCG
GCGTCTTCGTCCGGGGCGTCGCTGAGGCTGTACCAGCTGCCGGCCGTACG
GGAAGCGTGCGGCGGGTTTGATCCGAAGCGGTGCATCGGGGAGGGCGGTT
TTGGGAAGGTGAGAAAGGGAAGGGGGCTGGGG
back to top