mRNA_M-pyrifera_M_contig100827.178.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100827.178.1
Unique NamemRNA_M-pyrifera_M_contig100827.178.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: A0A2D4TC56_9GAMM (Small-conductance mechanosensitive channel n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D4TC56_9GAMM)

HSP 1 Score: 171 bits (434), Expect = 1.600e-52
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 1
Query:    1 NTATYGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQPAPTNTAPATES-LQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            +TATY ARKVRSA+IRQVKTAFDLAGISMPSEAREITFPEGVQVALAE  APTNTAPA E+ LQP   EAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL
Sbjct:   80 DTATYDARKVRSAVIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEPSAPTNTAPAPENPLQPPTSEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 184          
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: A0A3C1KSD9_9GAMM (Small-conductance mechanosensitive channel n=6 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KSD9_9GAMM)

HSP 1 Score: 171 bits (434), Expect = 2.620e-49
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 1
Query:    1 NTATYGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQPAPTNTAPATES-LQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            +TATY ARKVRSA+IRQVKTAFDLAGISMPSEAREITFPEGVQVALAE  APTNTAPA E+ LQP   EAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL
Sbjct:  372 DTATYDARKVRSAVIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEPSAPTNTAPAPENPLQPPTSEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 476          
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: A0A2E7BZH2_9GAMM (Small-conductance mechanosensitive channel n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7BZH2_9GAMM)

HSP 1 Score: 106 bits (265), Expect = 6.460e-25
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 NTATYGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQPAPTNTAPATESLQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            NTATY A+KVRSA IR VKTAF+ AGISMP E REITFP G++V L E          ++S   A    G   H+AEG LKN+D DIE+QA+A+RLPEGG+NLL
Sbjct:  367 NTATYDAQKVRSAAIRLVKTAFEQAGISMPGEVREITFPAGLRVDLQEPSGEAGVTFPSDSTPTAPDNVG--THIAEGDLKNTDSDIERQAQASRLPEGGENLL 468          
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: A0A557R2D8_9RHOO (Small-conductance mechanosensitive channel n=1 Tax=Denitromonas halophilus TaxID=1629404 RepID=A0A557R2D8_9RHOO)

HSP 1 Score: 85.9 bits (211), Expect = 2.040e-17
Identity = 55/101 (54.46%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   13 YGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQ-PAPTNTAPATESLQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            Y   K+RSA+IRQVK AF+  GISMP E REI FPEGV V + +Q PAPT  AP     QP A +  G    AEGGL + D+ +  QAR ARLPE G +LL
Sbjct:  375 YNGFKLRSALIRQVKNAFETHGISMPDENREILFPEGVPVRMLDQTPAPT-AAPTVADTQPVADDTTGSE--AEGGLVSEDEQLRAQARKARLPEEGADLL 472          
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: A0A517RM59_9PLAN (Small-conductance mechanosensitive channel n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RM59_9PLAN)

HSP 1 Score: 82.0 bits (201), Expect = 4.900e-16
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 NTATYGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQ--PAPTNTAPATESLQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            NTA +   KVRSA+IR  K AFD AGISMP EAREI FPEGV V +  +    P       E L P+  EA   A+ AEG L +  ++IE+QA+ +R PE G NLL
Sbjct:  388 NTAEFSTFKVRSAVIRLTKLAFDQAGISMPDEAREIVFPEGVPVQMISEHDQIPEPVVIPQEQLTPSREEAAS-ANEAEGDLTSEANEIEQQAKQSRSPESGQNLL 492          
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: UPI001C862FCD (mechanosensitive ion channel family protein n=1 Tax=Desulfuromonas versatilis TaxID=2802975 RepID=UPI001C862FCD)

HSP 1 Score: 78.6 bits (192), Expect = 7.990e-15
Identity = 48/102 (47.06%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    7 ATYGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQPAPTNTAPATESLQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            + Y   KV+S++IR VK AF+  GISMP EAREI FP+GV V + E   P    P  E    AA+E G     AEG L N +  + +QAR AR+PE G +LL
Sbjct:  366 SAYNGPKVKSSLIRLVKRAFEGRGISMPDEAREIVFPDGVPVRMLEAAEPPAKKPRPEE---AAVETGAVTTAAEGHLANEEGPLREQARRARMPEEGASLL 464          
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: UPI000408FDAA (mechanosensitive ion channel n=1 Tax=Desulfuromonas sp. TF TaxID=1232410 RepID=UPI000408FDAA)

HSP 1 Score: 77.8 bits (190), Expect = 1.460e-14
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   13 YGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQPAPTNTAPATESLQPAAIEAGGE---AHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            Y   K+RS++IR+VK +F   GISMP EAREI FP GV V L+ +  P   AP  E ++ A +EA  E   A  AEG L++ +  I +QAR AR+PE G++LL
Sbjct:  351 YNGPKIRSSLIRRVKRSFMDQGISMPDEAREIVFPRGVPVRLSREEVPLEEAPPAE-IRRAELEAEPEEPVATAAEGALESEEGKIREQARTARVPEEGEDLL 452          
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: A0A356A8G7_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356A8G7_9PLAN)

HSP 1 Score: 72.8 bits (177), Expect = 3.980e-14
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    7 ATYGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQPAPTNTAPATESLQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            A Y + KV SAIIR VK AFD AGISMP EARE+ FP GV V +        T     + +P+      +++ AEG L +   +I +QA+ +R PE G NLL
Sbjct:   41 AKYSSLKVNSAIIRLVKQAFDEAGISMPDEAREVVFPNGVPVHMISSQQFKETE--ASNKKPSGESPDSQSNAAEGDLSSESKEINEQAQKSRSPESGQNLL 140          
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: A0A3E0PNG2_9BACT (BON domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PNG2_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 2.490e-13
Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    1 NTATYGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQPAPTNTAPATESLQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            N   +   KV S++IR  K AFD A ISMP EARE+ FP GV V    Q  P     A E    A IE    AH AEG L +  +DIE+QAR AR PE G +LL
Sbjct:  368 NVHKHSFLKVLSSVIRLTKQAFDEAEISMPDEAREVVFPAGVPVITPGQEPPR----APEKRAAATIEDKSAAHSAEGDLASEAEDIEQQARNARSPEAGKDLL 467          
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Match: UPI001CD4C2DC (mechanosensitive ion channel family protein n=1 Tax=Desulfuromonas sp. CSMB_57 TaxID=2807629 RepID=UPI001CD4C2DC)

HSP 1 Score: 72.8 bits (177), Expect = 8.750e-13
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   13 YGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVAL-----AEQPAPTNTAPATESLQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGGDNLL 312
            Y   KV+S++IR VK A++  GISMP EARE+ FPEG+ V +     AEQP           L+PA + +       EG L + D+ +++QAR +R+PE G NLL
Sbjct:  373 YNGAKVKSSLIRLVKRAYEAHGISMPDEAREVLFPEGISVRMLENLAAEQPEGLQRPLPQPVLEPATLSS-----ETEGNLVSEDEQLQEQARKSRIPEEGKNLL 472          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100827.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4TC56_9GAMM1.600e-5289.52Small-conductance mechanosensitive channel n=1 Tax... [more]
A0A3C1KSD9_9GAMM2.620e-4989.52Small-conductance mechanosensitive channel n=6 Tax... [more]
A0A2E7BZH2_9GAMM6.460e-2558.65Small-conductance mechanosensitive channel n=1 Tax... [more]
A0A557R2D8_9RHOO2.040e-1754.46Small-conductance mechanosensitive channel n=1 Tax... [more]
A0A517RM59_9PLAN4.900e-1650.00Small-conductance mechanosensitive channel n=1 Tax... [more]
UPI001C862FCD7.990e-1547.06mechanosensitive ion channel family protein n=1 Ta... [more]
UPI000408FDAA1.460e-1447.57mechanosensitive ion channel n=1 Tax=Desulfuromona... [more]
A0A356A8G7_9PLAN3.980e-1444.12Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3E0PNG2_9BACT2.490e-1348.08BON domain-containing protein n=1 Tax=Planctomycet... [more]
UPI001CD4C2DC8.750e-1341.90mechanosensitive ion channel family protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100827contigM-pyrifera_M_contig100827:360..674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score162.9
Seed ortholog evalue8e-38
Seed eggNOG ortholog1121937.AUHJ01000015_gene147
Preferred namemcsS
KEGG koko:K03442
KEGG TC1.A.23.2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mechanosensitive ion channel
EggNOG OGs1MW1F@1224,1RNP3@1236,COG0668@1,COG0668@2
COG Functional cat.M
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.3262472-CDS-M-pyrifera_M_contig100827:359..6741622815505.3262472-CDS-M-pyrifera_M_contig100827:359..674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100827 360..674 -
1692277441.5822742-CDS-M-pyrifera_M_contig100827:359..6741692277441.5822742-CDS-M-pyrifera_M_contig100827:359..674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100827 360..674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100827.178.1prot_M-pyrifera_M_contig100827.178.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100827 360..674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100827.178.1

>prot_M-pyrifera_M_contig100827.178.1 ID=prot_M-pyrifera_M_contig100827.178.1|Name=mRNA_M-pyrifera_M_contig100827.178.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
NTATYGARKVRSAIIRQVKTAFDLAGISMPSEAREITFPEGVQVALAEQP
APTNTAPATESLQPAAIEAGGEAHLAEGGLKNSDDDIEKQARAARLPEGG
DNLL*
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mRNA from alignment at M-pyrifera_M_contig100827:360..674-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100827.178.1 ID=mRNA_M-pyrifera_M_contig100827.178.1|Name=mRNA_M-pyrifera_M_contig100827.178.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig100827:360..674- (Macrocystis pyrifera P11B4 male)
AACACGGCAACCTACGGTGCCCGCAAAGTCCGCTCAGCGATAATCAGGCA GGTGAAAACGGCCTTTGACCTTGCGGGCATCTCCATGCCCAGCGAGGCTC GGGAGATCACCTTCCCCGAGGGTGTTCAGGTGGCCCTGGCCGAGCAGCCG GCACCGACAAATACGGCACCCGCGACCGAGTCCCTGCAACCGGCGGCCAT CGAAGCTGGCGGCGAAGCCCACCTTGCTGAGGGCGGGCTGAAGAACAGCG ACGACGACATAGAGAAGCAGGCCCGGGCGGCGCGCCTGCCCGAAGGCGGG GACAACCTGCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100827:360..674-

>mRNA_M-pyrifera_M_contig100827.178.1 ID=mRNA_M-pyrifera_M_contig100827.178.1|Name=mRNA_M-pyrifera_M_contig100827.178.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig100827:360..674- (Macrocystis pyrifera P11B4 male)
AACACGGCAACCTACGGTGCCCGCAAAGTCCGCTCAGCGATAATCAGGCA
GGTGAAAACGGCCTTTGACCTTGCGGGCATCTCCATGCCCAGCGAGGCTC
GGGAGATCACCTTCCCCGAGGGTGTTCAGGTGGCCCTGGCCGAGCAGCCG
GCACCGACAAATACGGCACCCGCGACCGAGTCCCTGCAACCGGCGGCCAT
CGAAGCTGGCGGCGAAGCCCACCTTGCTGAGGGCGGGCTGAAGAACAGCG
ACGACGACATAGAGAAGCAGGCCCGGGCGGCGCGCCTGCCCGAAGGCGGG
GACAACCTGCTCTAGAACACGGCAACCTACGGTGCCCGCAAAGTCCGCTC
AGCGATAATCAGGCAGGTGAAAACGGCCTTTGACCTTGCGGGCATCTCCA
TGCCCAGCGAGGCTCGGGAGATCACCTTCCCCGAGGGTGTTCAGGTGGCC
CTGGCCGAGCAGCCGGCACCGACAAATACGGCACCCGCGACCGAGTCCCT
GCAACCGGCGGCCATCGAAGCTGGCGGCGAAGCCCACCTTGCTGAGGGCG
GGCTGAAGAACAGCGACGACGACATAGAGAAGCAGGCCCGGGCGGCGCGC
CTGCCCGAAGGCGGGGACAACCTGCTCTAG
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