mRNA_M-pyrifera_M_contig75225.17759.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75225.17759.1
Unique NamemRNA_M-pyrifera_M_contig75225.17759.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: D8LBU7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU7_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.000e-22
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAKVQQYEDGHRDEITKNAAKK 207
            +K+I   FNRSEEDF GDLRAYNDYLE  ED+IYGLCSG K E  +AQA V++YED HR EITKNAA+K
Sbjct:   81 RKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARK 149          
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: A0A1G4KAR3_9SACH (RNA polymerase II transcription factor B subunit 3 n=1 Tax=Lachancea mirantina TaxID=1230905 RepID=A0A1G4KAR3_9SACH)

HSP 1 Score: 53.5 bits (127), Expect = 1.330e-6
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAKVQQYEDGHRDEITKN 195
            +K++++ FN++ +DF+GDL AYN YLE  EDIIY L +GV  ++++ + K++ YED ++  I  N
Sbjct:   82 RKRVSNVFNKTMDDFDGDLAAYNKYLEEVEDIIYNLNNGV--DVAKTEEKLRTYEDLNKQLIMSN 144          
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: A0A1Y1V063_9FUNG (RNA polymerase II transcription factor B subunit 3 n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V063_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 2.570e-6
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAKVQQYEDGHRDEITKNAAK 204
            +KK+   FN+  EDF GDLR YNDYLE+ E+I++ L + +  ++ +   K++++   ++  IT NAAK
Sbjct:   87 RKKVGKLFNKRLEDFGGDLRKYNDYLEVVEEIMFNLANNI--DVKETNEKIEKWRIENQALITTNAAK 152          
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: A0A553NQ35_TIGCA (RING-type domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NQ35_TIGCA)

HSP 1 Score: 52.0 bits (123), Expect = 4.610e-6
Identity = 27/65 (41.54%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAKVQQYEDGHRDEITKN 195
            +K+I   +N   EDF+ DL+AYNDYLE+ ED+I+ LC+ +  +I +   ++ +Y++ ++D ITKN
Sbjct:   75 RKRILRDYNMKREDFD-DLQAYNDYLEMVEDLIFNLCNNI--DILETNKRIAEYKEKNKDFITKN 136          
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: UPI001C9C0920 (CDK-activating kinase assembly factor MAT1 n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9C0920)

HSP 1 Score: 51.2 bits (121), Expect = 8.800e-6
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAKVQQYEDGHRDEITKN 195
            +K++   FN+ EEDFE  LRAYNDYLE  E I+Y L + +  ++ +   +++QY+  ++D+I KN
Sbjct:   75 RKRVLRDFNKKEEDFEN-LRAYNDYLEEVETIVYNLANNI--DVVETNKRIEQYKRDNKDQILKN 136          
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: A0A6H0Y5W0_9PEZI (RNA polymerase II transcription factor B subunit 3 n=1 Tax=Peltaster fructicola TaxID=286661 RepID=A0A6H0Y5W0_9PEZI)

HSP 1 Score: 51.2 bits (121), Expect = 9.050e-6
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   22 FNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAKVQQYEDGHRDEITKNA 198
            FN+ E+DFE DLR+YNDYL   EDI + L + +  ++    A+++QY+  H+DEI +NA
Sbjct:  109 FNKREDDFE-DLRSYNDYLNEVEDITFNLVNNI--DVDANNARLEQYQKAHQDEIRENA 164          
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: C5DM07_LACTC (RNA polymerase II transcription factor B subunit 3 n=7 Tax=Lachancea TaxID=300275 RepID=C5DM07_LACTC)

HSP 1 Score: 50.8 bits (120), Expect = 1.210e-5
Identity = 26/65 (40.00%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAKVQQYEDGHRDEITKN 195
            +K++ + FN++ +DFEGDL+A+N YLE  EDI+Y L +G+  +++  + K++ YED ++  I  N
Sbjct:   84 RKRVFNVFNKTLDDFEGDLKAFNKYLEEVEDIVYNLDNGI--DVANTEEKLRTYEDLNKQLIMAN 146          
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: A0A1D8PN00_CANAL (RNA polymerase II transcription factor B subunit 3 n=4 Tax=Candida TaxID=1535326 RepID=A0A1D8PN00_CANAL)

HSP 1 Score: 50.8 bits (120), Expect = 1.230e-5
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLC-SGVKDEISQAQAKVQQYEDGHRDEI 186
            +KK++  +N++EEDF GDL+ YN YLE  EDII+ L  S  K EI   + ++ +YE  H+ EI
Sbjct:   86 RKKVSAIYNKTEEDFPGDLQGYNRYLENIEDIIFKLSYSDDKQEIETVETELNKYEQEHKLEI 148          
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: A0A0L0HV92_SPIPD (RNA polymerase II transcription factor B subunit 3 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HV92_SPIPD)

HSP 1 Score: 48.9 bits (115), Expect = 5.760e-5
Identity = 26/68 (38.24%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAKVQQYEDGHRDEITKNAAK 204
            +K+I   +N+  EDF+G+LRAYNDYLE  E+I++ L + V  ++ +   ++++YE  ++D I  N  K
Sbjct:   81 RKRIGRVYNKRLEDFKGNLRAYNDYLEDVEEIMFNLINDV--DVKETNERIKKYEQENKDLINANLQK 146          
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Match: A0A293LYA8_ORNER (CDK-activating kinase assembly factor (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A293LYA8_ORNER)

HSP 1 Score: 48.9 bits (115), Expect = 5.800e-5
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAKVQQYEDGHRDEITKNAAK 204
            +K++   FN+ EEDFE  LRAYNDYLE  E IIY L + V  +I   + K++QY+  ++ +I K  +K
Sbjct:   75 RKRVLKDFNKHEEDFES-LRAYNDYLEEVETIIYNLTNDV--DIEGTRRKIEQYKRENKTQIAKGKSK 139          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75225.17759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LBU7_ECTSI4.000e-2271.01RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A1G4KAR3_9SACH1.330e-643.08RNA polymerase II transcription factor B subunit 3... [more]
A0A1Y1V063_9FUNG2.570e-639.71RNA polymerase II transcription factor B subunit 3... [more]
A0A553NQ35_TIGCA4.610e-641.54RING-type domain-containing protein n=1 Tax=Tigrio... [more]
UPI001C9C09208.800e-641.54CDK-activating kinase assembly factor MAT1 n=1 Tax... [more]
A0A6H0Y5W0_9PEZI9.050e-645.76RNA polymerase II transcription factor B subunit 3... [more]
C5DM07_LACTC1.210e-540.00RNA polymerase II transcription factor B subunit 3... [more]
A0A1D8PN00_CANAL1.230e-546.03RNA polymerase II transcription factor B subunit 3... [more]
A0A0L0HV92_SPIPD5.760e-538.24RNA polymerase II transcription factor B subunit 3... [more]
A0A293LYA8_ORNER5.800e-544.12CDK-activating kinase assembly factor (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75225contigM-pyrifera_M_contig75225:613..822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4.7e-18
Seed eggNOG ortholog2880.D8LBU7
Preferred nameTFB3
KEGG koko:K10842
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000109,GO:0000112,GO:0000428,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008047,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0016070,GO:0016310,GO:0016538,GO:0016567,GO:0016591,GO:0016740,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019887,GO:0030234,GO:0030295,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043539,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061575,GO:0061630,GO:0061659,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070816,GO:0070985,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0098772,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1904029,GO:1904031,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activator activity
EggNOG OGsCOG5220@1,KOG3800@2759
COG Functional cat.DKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.3192348-CDS-M-pyrifera_M_contig75225:612..8221622816650.3192348-CDS-M-pyrifera_M_contig75225:612..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75225 613..822 -
1692278098.8119361-CDS-M-pyrifera_M_contig75225:612..8221692278098.8119361-CDS-M-pyrifera_M_contig75225:612..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75225 613..822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75225.17759.1prot_M-pyrifera_M_contig75225.17759.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75225 613..822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75225.17759.1

>prot_M-pyrifera_M_contig75225.17759.1 ID=prot_M-pyrifera_M_contig75225.17759.1|Name=mRNA_M-pyrifera_M_contig75225.17759.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
KKKINDSFNRSEEDFEGDLRAYNDYLEIREDIIYGLCSGVKDEISQAQAK
VQQYEDGHRDEITKNAAKK*
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mRNA from alignment at M-pyrifera_M_contig75225:613..822-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75225.17759.1 ID=mRNA_M-pyrifera_M_contig75225.17759.1|Name=mRNA_M-pyrifera_M_contig75225.17759.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig75225:613..822- (Macrocystis pyrifera P11B4 male)
AAAAAAAAAATAAACGACAGCTTTAACCGTTCGGAGGAAGATTTCGAGGG GGACCTGCGGGCGTACAACGACTACCTCGAGATCCGAGAAGACATCATCT ACGGCCTGTGCAGCGGCGTCAAGGACGAGATCAGCCAGGCGCAAGCGAAA GTGCAGCAGTACGAGGATGGCCACAGGGACGAGATCACGAAAAATGCCGC CAAGAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75225:613..822-

>mRNA_M-pyrifera_M_contig75225.17759.1 ID=mRNA_M-pyrifera_M_contig75225.17759.1|Name=mRNA_M-pyrifera_M_contig75225.17759.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig75225:613..822- (Macrocystis pyrifera P11B4 male)
AAAAAAAAAATAAACGACAGCTTTAACCGTTCGGAGGAAGATTTCGAGGG
GGACCTGCGGGCGTACAACGACTACCTCGAGATCCGAGAAGACATCATCT
ACGGCCTGTGCAGCGGCGTCAAGGACGAGATCAGCCAGGCGCAAGCGAAA
GTGCAGCAGTACGAGGATGGCCACAGGGACGAGATCACGAAAAATGCCGC
CAAGAAGTGAAAAAAAAAAATAAACGACAGCTTTAACCGTTCGGAGGAAG
ATTTCGAGGGGGACCTGCGGGCGTACAACGACTACCTCGAGATCCGAGAA
GACATCATCTACGGCCTGTGCAGCGGCGTCAAGGACGAGATCAGCCAGGC
GCAAGCGAAAGTGCAGCAGTACGAGGATGGCCACAGGGACGAGATCACGA
AAAATGCCGCCAAGAAGTGA
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