prot_M-pyrifera_M_contig75158.17750.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig75158.17750.1
Unique Nameprot_M-pyrifera_M_contig75158.17750.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length100
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig75158.17750.1 vs. uniprot
Match: A0A5A8E0M8_CAFRO (Galactosylceramidase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E0M8_CAFRO)

HSP 1 Score: 73.6 bits (179), Expect = 4.150e-13
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:    1 CLGVDGKDPSSGFPNVALVECGDSPLTLTMLSTQQIKDTST---------GYCLDITASGTTPGSNVELYTCDSGHVYPNQQYEFATDGALMN 84
            CLGV GKDPSSG+PNVALV C   P   +     Q+  T+T         GYC+D+T   +  G+NVELY C+ G    NQ++    DG ++N
Sbjct:  726 CLGVSGKDPSSGYPNVALVAC--DPQDASQAWDLQLNSTTTQFVNGFENKGYCMDVTGQASWAGANVELYECNGGD---NQKFVLDEDGRIVN 813
[Close]
BLAST of mRNA_M-pyrifera_M_contig75158.17750.1 vs. uniprot
Match: UPI000ADA32E1 (ricin-type beta-trefoil lectin domain protein n=1 Tax=Demequina aestuarii TaxID=327095 RepID=UPI000ADA32E1)

HSP 1 Score: 56.2 bits (134), Expect = 5.100e-7
Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = 0 
Query:    1 CLGVDGKDPSSGFPNVALVECGDSPLTLTMLSTQQIKDTSTGYCLDITASGTTPGSNVELYTCDSGHVYPNQQYEFATDGALMNMNSHLCV 91
            C+ V G +  +   +V + +C       +  ST     T+ G CLDI  +GTTPG+ V+LY C+S      QQ+    DG+L+N  S LC+
Sbjct:  577 CVDVHGANTGTNGTSVVVEDCMREANDQSWWSTSDGSLTTLGRCLDIVGNGTTPGTPVQLYDCNSSG---GQQWVQQDDGSLLNPQSGLCL 664
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75158.17750.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8E0M8_CAFRO4.150e-1343.01Galactosylceramidase n=4 Tax=Cafeteria roenbergens... [more]
UPI000ADA32E15.100e-735.16ricin-type beta-trefoil lectin domain protein n=1 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000772Ricin B, lectin domainPFAMPF00652Ricin_B_lectincoord: 1..96
e-value: 2.5E-10
score: 40.7
IPR000772Ricin B, lectin domainPROSITEPS50231RICIN_B_LECTINcoord: 24..99
score: 12.789
NoneNo IPR availableGENE3D2.80.10.50coord: 1..99
e-value: 4.9E-14
score: 54.6
IPR035992Ricin B-like lectinsSUPERFAMILY50370Ricin B-like lectinscoord: 1..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75158contigM-pyrifera_M_contig75158:127..426 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75158.17750.1mRNA_M-pyrifera_M_contig75158.17750.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig75158 127..426 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig75158.17750.1 ID=prot_M-pyrifera_M_contig75158.17750.1|Name=mRNA_M-pyrifera_M_contig75158.17750.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
CLGVDGKDPSSGFPNVALVECGDSPLTLTMLSTQQIKDTSTGYCLDITAS
GTTPGSNVELYTCDSGHVYPNQQYEFATDGALMNMNSHLCVGVCTHSSS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000772Ricin_B_lectin
IPR035992Ricin_B-like_lectins