mRNA_M-pyrifera_M_contig75158.17750.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75158.17750.1
Unique NamemRNA_M-pyrifera_M_contig75158.17750.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75158.17750.1 vs. uniprot
Match: A0A5A8E0M8_CAFRO (Galactosylceramidase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E0M8_CAFRO)

HSP 1 Score: 73.6 bits (179), Expect = 4.150e-13
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 CLGVDGKDPSSGFPNVALVECGDSPLTLTMLSTQQIKDTST---------GYCLDITASGTTPGSNVELYTCDSGHVYPNQQYEFATDGALMN 252
            CLGV GKDPSSG+PNVALV C   P   +     Q+  T+T         GYC+D+T   +  G+NVELY C+ G    NQ++    DG ++N
Sbjct:  726 CLGVSGKDPSSGYPNVALVAC--DPQDASQAWDLQLNSTTTQFVNGFENKGYCMDVTGQASWAGANVELYECNGGD---NQKFVLDEDGRIVN 813
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BLAST of mRNA_M-pyrifera_M_contig75158.17750.1 vs. uniprot
Match: UPI000ADA32E1 (ricin-type beta-trefoil lectin domain protein n=1 Tax=Demequina aestuarii TaxID=327095 RepID=UPI000ADA32E1)

HSP 1 Score: 56.2 bits (134), Expect = 5.100e-7
Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:    1 CLGVDGKDPSSGFPNVALVECGDSPLTLTMLSTQQIKDTSTGYCLDITASGTTPGSNVELYTCDSGHVYPNQQYEFATDGALMNMNSHLCV 273
            C+ V G +  +   +V + +C       +  ST     T+ G CLDI  +GTTPG+ V+LY C+S      QQ+    DG+L+N  S LC+
Sbjct:  577 CVDVHGANTGTNGTSVVVEDCMREANDQSWWSTSDGSLTTLGRCLDIVGNGTTPGTPVQLYDCNSSG---GQQWVQQDDGSLLNPQSGLCL 664
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75158.17750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8E0M8_CAFRO4.150e-1343.01Galactosylceramidase n=4 Tax=Cafeteria roenbergens... [more]
UPI000ADA32E15.100e-735.16ricin-type beta-trefoil lectin domain protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75158contigM-pyrifera_M_contig75158:127..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.8705223-CDS-M-pyrifera_M_contig75158:126..4261622816649.8705223-CDS-M-pyrifera_M_contig75158:126..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75158 127..426 +
1692278098.5900357-CDS-M-pyrifera_M_contig75158:126..4261692278098.5900357-CDS-M-pyrifera_M_contig75158:126..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75158 127..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75158.17750.1prot_M-pyrifera_M_contig75158.17750.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75158 127..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75158.17750.1

>prot_M-pyrifera_M_contig75158.17750.1 ID=prot_M-pyrifera_M_contig75158.17750.1|Name=mRNA_M-pyrifera_M_contig75158.17750.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
CLGVDGKDPSSGFPNVALVECGDSPLTLTMLSTQQIKDTSTGYCLDITAS
GTTPGSNVELYTCDSGHVYPNQQYEFATDGALMNMNSHLCVGVCTHSSS*
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mRNA from alignment at M-pyrifera_M_contig75158:127..426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75158.17750.1 ID=mRNA_M-pyrifera_M_contig75158.17750.1|Name=mRNA_M-pyrifera_M_contig75158.17750.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig75158:127..426+ (Macrocystis pyrifera P11B4 male)
TGTCTTGGTGTTGATGGGAAAGATCCTAGCTCTGGATTCCCAAATGTCGC
TCTCGTAGAATGTGGAGACAGTCCACTCACCCTCACGATGCTTTCAACCC
AACAAATCAAAGACACCTCTACAGGTTACTGTCTCGATATCACTGCCTCC
GGAACCACTCCTGGCTCCAACGTTGAGCTTTACACCTGTGACTCAGGGCA
CGTCTACCCGAACCAGCAGTACGAGTTTGCAACCGATGGCGCTCTCATGA
ACATGAACTCCCACCTCTGTGTTGGAGTATGCACACATTCCTCATCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75158:127..426+

>mRNA_M-pyrifera_M_contig75158.17750.1 ID=mRNA_M-pyrifera_M_contig75158.17750.1|Name=mRNA_M-pyrifera_M_contig75158.17750.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig75158:127..426+ (Macrocystis pyrifera P11B4 male)
TGTCTTGGTGTTGATGGGAAAGATCCTAGCTCTGGATTCCCAAATGTCGC
TCTCGTAGAATGTGGAGACAGTCCACTCACCCTCACGATGCTTTCAACCC
AACAAATCAAAGACACCTCTACAGGTTACTGTCTCGATATCACTGCCTCC
GGAACCACTCCTGGCTCCAACGTTGAGCTTTACACCTGTGACTCAGGGCA
CGTCTACCCGAACCAGCAGTACGAGTTTGCAACCGATGGCGCTCTCATGA
ACATGAACTCCCACCTCTGTGTTGGAGTATGCACACATTCCTCATCCTAA
TGTCTTGGTGTTGATGGGAAAGATCCTAGCTCTGGATTCCCAAATGTCGC
TCTCGTAGAATGTGGAGACAGTCCACTCACCCTCACGATGCTTTCAACCC
AACAAATCAAAGACACCTCTACAGGTTACTGTCTCGATATCACTGCCTCC
GGAACCACTCCTGGCTCCAACGTTGAGCTTTACACCTGTGACTCAGGGCA
CGTCTACCCGAACCAGCAGTACGAGTTTGCAACCGATGGCGCTCTCATGA
ACATGAACTCCCACCTCTGTGTTGGAGTATGCACACATTCCTCATCCTAA
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