prot_M-pyrifera_M_contig100821.176.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig100821.176.1
Unique Nameprot_M-pyrifera_M_contig100821.176.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length107
Homology
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BLAST of mRNA_M-pyrifera_M_contig100821.176.1 vs. uniprot
Match: UPI001E6747E3 (uncharacterized protein LOC123763147 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E6747E3)

HSP 1 Score: 59.3 bits (142), Expect = 5.670e-8
Identity = 32/83 (38.55%), Postives = 40/83 (48.19%), Query Frame = 0 
Query:   17 CPFYHTLLDGRRSPLHFTYSNQRCSDAPSDDKGKCSKGAMCPMAHNDCEHFYHPDFVRKSVCMYADNPSQC--KGPLCSFMHP 97
            C  YH LLD RRSP  + YS++ C       + KC+K   CP AH   E  YH    R  VC   +    C  K  +C F+HP
Sbjct: 3959 CSGYHNLLDRRRSPGFYEYSDEMCRAVIQ--RTKCAKQDSCPYAHTTVERDYHVKRFRSLVCPGRNKAHFCSKKKEVCPFVHP 4039
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100821.176.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E6747E35.670e-838.55uncharacterized protein LOC123763147 n=1 Tax=Proca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.1000.10coord: 45..105
e-value: 9.5E-6
score: 27.5
NoneNo IPR availablePANTHERPTHR14493UNKEMPT FAMILY MEMBERcoord: 3..102
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 72..99
score: 7.695
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 34..64
score: 10.155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100821contigM-pyrifera_M_contig100821:255..575 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100821.176.1mRNA_M-pyrifera_M_contig100821.176.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig100821 255..575 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig100821.176.1 ID=prot_M-pyrifera_M_contig100821.176.1|Name=mRNA_M-pyrifera_M_contig100821.176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
LQTHRCQRVFKHDWFKCPFYHTLLDGRRSPLHFTYSNQRCSDAPSDDKGK
CSKGAMCPMAHNDCEHFYHPDFVRKSVCMYADNPSQCKGPLCSFMHPAEM
MRRDFTE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH