mRNA_M-pyrifera_M_contig73791.17488.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73791.17488.1
Unique NamemRNA_M-pyrifera_M_contig73791.17488.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: A0A8C3TQR9_CATUS (Leucine rich repeat containing 40 n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3TQR9_CATUS)

HSP 1 Score: 101 bits (251), Expect = 1.340e-20
Identity = 93/270 (34.44%), Postives = 129/270 (47.78%), Query Frame = 1
Query:   16 EKWWELSDVRRLDVTHNAIAVLGPSFSSLTALQVLRAAHNRLEHVDAAALQSSEALVLVDLSHNALERLP---AVGTSVERLDVSHNRLRHAPALAVGSVLQVLDVSENKSLESLPSSLPASLRQLLVSGCPIRALPKRLEGLEVLEAERCSLCEAPTLPSSLTRANLRQNHLSSLPFLRECNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            ++WWE +D+ +L +  N +  L      L AL VL                        D+S+N L  +P   A+  +V RL ++ N+LR  PA      L  +  S   + E L S L      L+ +G  +R L      LE +  +  S+       +SL +  LR+N L SLP    C LL  L  G N+I  ++A  L  L  LCVL+L  N I ++ P     L+ L  LDL+N  ++RLPYTLG LP L  L LEGNPLRTIR
Sbjct:   79 DRWWEQTDLTKLILASNKLQSLSEDVQLLPALTVLD-----------------------DVSNNQLTAIPSSFALLVNVVRLSLAGNQLRELPA-----DLSAMRNSHCWADEFLSSPLSVYHWTLISTG--LRQLDCTKNYLETVPPKLASM-------ASLEQLYLRKNKLRSLPEFPSCKLLKELHAGENQIEMLNAENLKQLSSLCVLELRDNKIKAV-PEEITLLQKLERLDLANNDISRLPYTLGNLPQLKFLALEGNPLRTIR 310          
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: A0A803V2X3_FICAL (Leucine rich repeat containing 40 n=2 Tax=Ficedula albicollis TaxID=59894 RepID=A0A803V2X3_FICAL)

HSP 1 Score: 80.9 bits (198), Expect = 8.570e-14
Identity = 53/110 (48.18%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  487 SSLTRANLRQNHLSSLPFLRECNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            +SL +  LR+N L +LP    C LL  L  G N+I  ++A  L  L  LCVL+L  N I ++ P     L+ L  LDL+N  ++RLPYTLG LP L  L LEGNPLRTIR
Sbjct:   25 ASLEQLYLRKNKLRALPEFPSCKLLKELHAGENQIEMLNAENLKQLSSLCVLELRDNKIKAV-PEEITVLQKLERLDLANNDISRLPYTLGNLPQLKFLALEGNPLRTIR 133          
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: K7FEB8_PELSI (Uncharacterized protein n=2 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7FEB8_PELSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.380e-13
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  487 SSLTRANLRQNHLSSLPFLRECNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            +SL +  LR+N L +LP    C LL  LL+G N+I  ++A  L  L  LCVL+L  N + SL     L L+ L  LDL+N  ++ LPYTLG LP L  L +EGNPLR IR
Sbjct:    2 ASLEQLYLRKNKLQNLPEFPSCKLLKELLVGENQIEVLNAEHLKHLNSLCVLELRDNKLKSLPDEITL-LQGLERLDLTNNDISSLPYTLGNLPQLKLLAVEGNPLRAIR 110          
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: A0A7K7PWY9_ACRAR (LRC40 protein (Fragment) n=1 Tax=Acrocephalus arundinaceus TaxID=39621 RepID=A0A7K7PWY9_ACRAR)

HSP 1 Score: 72.0 bits (175), Expect = 8.500e-11
Identity = 47/94 (50.00%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  535 PFLRECNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            P L  C LL  L  G N+I  ++A  L  L  LCVL+L  N I ++ P     L+ L  LDL+N  ++RLPYTLG LP L  L LEGNPLRTIR
Sbjct:  260 PELPSCKLLKELHAGENQIEVLNAENLKQLSSLCVLELRDNKIKAV-PEEITVLQKLERLDLANNDISRLPYTLGNLPQLKFLALEGNPLRTIR 352          
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: A0A7L3GTS3_9AVES (LRC40 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3GTS3_9AVES)

HSP 1 Score: 72.0 bits (175), Expect = 1.120e-10
Identity = 48/94 (51.06%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  535 PFLRECNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            P L  C LL  L  G N+I  ++A  L  L CL VL+L  N I S+     L L+ L  LDL+N  ++RLPYTLG LP L  L LEGNPLRTIR
Sbjct:  209 PELPSCKLLKELHAGENQIEILNAENLKHLNCLSVLELRDNKIKSVPDEITL-LQKLERLDLANNDISRLPYTLGNLPQLKFLALEGNPLRTIR 301          
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: A0A7K9WQW4_9PASS (LRC40 protein (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K9WQW4_9PASS)

HSP 1 Score: 70.9 bits (172), Expect = 2.900e-10
Identity = 46/94 (48.94%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  535 PFLRECNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            P    C LL  L  G N+I  + A  L  L  LCVL+L  N I ++ P     L+ L  LDL+N  ++RLPYTLG LP L  L LEGNPLRTIR
Sbjct:  124 PEFPSCKLLKELHAGENQIETLDAENLQQLSSLCVLELRDNKIKAV-PEEITVLQKLERLDLANNDISRLPYTLGNLPQLKFLALEGNPLRTIR 216          
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: A0A091E6E2_CORBR (Leucine-rich repeat-containing protein 40 (Fragment) n=4 Tax=Corvus TaxID=30420 RepID=A0A091E6E2_CORBR)

HSP 1 Score: 70.5 bits (171), Expect = 4.310e-10
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  535 PFLRECNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            P    C LL  L  G N+I  ++A  L  L  LCVL+L  N I ++ P     L+ L  LDL+N  ++RLPYTLG LP L  L LEGNPLRTIR
Sbjct:  209 PEFPSCKLLKELHAGENQIEILNAENLKQLSSLCVLELRDNKIKAV-PEEITVLQKLERLDLANNDISRLPYTLGNLPQLKFLALEGNPLRTIR 301          
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: U3JET0_FICAL (Leucine rich repeat containing 40 n=1 Tax=Ficedula albicollis TaxID=59894 RepID=U3JET0_FICAL)

HSP 1 Score: 70.1 bits (170), Expect = 6.040e-10
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  550 CNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            C LL  L  G N+I  ++A  L  L  LCVL+L  N I ++ P     L+ L  LDL+N  ++RLPYTLG LP L  L LEGNPLRTIR
Sbjct:  268 CKLLKELHAGENQIEMLNAENLKQLSSLCVLELRDNKIKAV-PEEITVLQKLERLDLANNDISRLPYTLGNLPQLKFLALEGNPLRTIR 355          
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: A0A7L2AG33_9GRUI (LRC40 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L2AG33_9GRUI)

HSP 1 Score: 69.7 bits (169), Expect = 8.100e-10
Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  535 PFLRECNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            P    C LL  L  G N+I  ++A  L  L  LCVL+L  N I S+ P     L+ L  LDLSN  ++RLPYTLG LP L  L LEGNPLR IR
Sbjct:  258 PEFPSCKLLKELHAGENQIEILNAENLKHLNSLCVLELRDNKIKSV-PDEITVLQKLERLDLSNNDISRLPYTLGNLPQLKFLALEGNPLRAIR 350          
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Match: A0A851FAU2_PITSO (LRC40 protein (Fragment) n=1 Tax=Pitta sordida TaxID=9163 RepID=A0A851FAU2_PITSO)

HSP 1 Score: 68.9 bits (167), Expect = 1.460e-9
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  535 PFLRECNLLDTLLLGLNRISDVSALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPYTLGFLPNLSRLPLEGNPLRTIR 816
            P    C LL  L  G N+I  ++A  L  L  LCVL+L  N I ++ P   + L+ L  LDL+N  ++RLPYTLG LP+L  L LEGNPLR IR
Sbjct:  248 PEFPSCKLLKELHAGENQIEILNAENLQHLSSLCVLELRDNKIKAV-PEEIVLLQRLERLDLANNDISRLPYTLGNLPHLKFLALEGNPLRAIR 340          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73791.17488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C3TQR9_CATUS1.340e-2034.44Leucine rich repeat containing 40 n=1 Tax=Catharus... [more]
A0A803V2X3_FICAL8.570e-1448.18Leucine rich repeat containing 40 n=2 Tax=Ficedula... [more]
K7FEB8_PELSI1.380e-1347.27Uncharacterized protein n=2 Tax=Pelodiscus sinensi... [more]
A0A7K7PWY9_ACRAR8.500e-1150.00LRC40 protein (Fragment) n=1 Tax=Acrocephalus arun... [more]
A0A7L3GTS3_9AVES1.120e-1051.06LRC40 protein (Fragment) n=2 Tax=Neognathae TaxID=... [more]
A0A7K9WQW4_9PASS2.900e-1048.94LRC40 protein (Fragment) n=2 Tax=Passeriformes Tax... [more]
A0A091E6E2_CORBR4.310e-1048.94Leucine-rich repeat-containing protein 40 (Fragmen... [more]
U3JET0_FICAL6.040e-1050.56Leucine rich repeat containing 40 n=1 Tax=Ficedula... [more]
A0A7L2AG33_9GRUI8.100e-1050.00LRC40 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]
A0A851FAU2_PITSO1.460e-947.87LRC40 protein (Fragment) n=1 Tax=Pitta sordida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73791contigM-pyrifera_M_contig73791:1..816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score80.1
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog13735.ENSPSIP00000006378
Preferred nameLRRC40
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006897,GO:0006909,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0016192,GO:0023052,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0065007,GO:0071944,GO:0098657
EggNOG free text desc.Leucine Rich Repeat
EggNOG OGs38HJE@33154,3BJDK@33208,3CV88@33213,489UU@7711,499D4@7742,4C9GU@8459,COG4886@1,KOG0472@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Exons1
Model size816
Cds size816
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.6793647-CDS-M-pyrifera_M_contig73791:0..8161622816635.6793647-CDS-M-pyrifera_M_contig73791:0..816Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73791 1..816 -
1692278090.3689537-CDS-M-pyrifera_M_contig73791:0..8161692278090.3689537-CDS-M-pyrifera_M_contig73791:0..816Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73791 1..816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73791.17488.1prot_M-pyrifera_M_contig73791.17488.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73791 1..816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73791.17488.1

>prot_M-pyrifera_M_contig73791.17488.1 ID=prot_M-pyrifera_M_contig73791.17488.1|Name=mRNA_M-pyrifera_M_contig73791.17488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=272bp
ALEEGEKWWELSDVRRLDVTHNAIAVLGPSFSSLTALQVLRAAHNRLEHV
DAAALQSSEALVLVDLSHNALERLPAVGTSVERLDVSHNRLRHAPALAVG
SVLQVLDVSENKSLESLPSSLPASLRQLLVSGCPIRALPKRLEGLEVLEA
ERCSLCEAPTLPSSLTRANLRQNHLSSLPFLRECNLLDTLLLGLNRISDV
SALALSALPCLCVLDLSSNPISSLAPATCLHLRSLHTLDLSNCSLTRLPY
TLGFLPNLSRLPLEGNPLRTIR
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mRNA from alignment at M-pyrifera_M_contig73791:1..816-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73791.17488.1 ID=mRNA_M-pyrifera_M_contig73791.17488.1|Name=mRNA_M-pyrifera_M_contig73791.17488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig73791:1..816- (Macrocystis pyrifera P11B4 male)
GCGTTGGAGGAGGGCGAGAAGTGGTGGGAGTTGAGTGACGTGAGGCGTCT GGATGTGACGCACAACGCGATAGCAGTGCTCGGTCCTTCGTTTTCGTCGC TGACGGCGCTGCAGGTGCTTCGTGCGGCACACAACCGGCTGGAGCACGTG GATGCAGCGGCGTTGCAGTCGTCCGAGGCGCTGGTGTTGGTGGATTTGTC CCACAACGCGCTGGAACGTCTTCCGGCCGTTGGAACGAGCGTGGAGCGTC TGGATGTGTCGCACAACCGGCTGCGCCATGCCCCTGCGCTTGCTGTGGGC TCTGTGTTGCAGGTGTTGGACGTGTCTGAGAACAAATCGCTGGAATCGTT GCCCTCCAGTCTCCCTGCATCGCTGCGACAGCTGCTGGTGAGTGGTTGTC CCATTCGAGCCCTGCCCAAGCGACTGGAGGGGCTGGAGGTGTTGGAGGCG GAGCGCTGTAGTCTCTGTGAAGCCCCCACCCTCCCCTCGTCGCTCACTCG AGCAAACCTTCGCCAAAACCACCTCTCTTCTCTGCCCTTCCTACGCGAGT GCAATCTCCTCGACACCCTCCTCCTCGGGCTCAACCGCATTTCGGACGTT TCCGCGCTGGCTCTTTCCGCTCTGCCTTGCCTCTGCGTGCTCGACCTCTC CTCCAACCCCATCTCTTCTCTCGCCCCCGCCACCTGCCTCCACCTCCGTT CCCTCCACACCCTAGATCTCTCCAACTGCTCCCTCACGCGCCTCCCTTAC ACCCTAGGCTTCCTCCCAAACCTCTCCAGACTGCCCCTCGAAGGAAACCC GCTCAGAACCATCAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73791:1..816-

>mRNA_M-pyrifera_M_contig73791.17488.1 ID=mRNA_M-pyrifera_M_contig73791.17488.1|Name=mRNA_M-pyrifera_M_contig73791.17488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1632bp|location=Sequence derived from alignment at M-pyrifera_M_contig73791:1..816- (Macrocystis pyrifera P11B4 male)
GCGTTGGAGGAGGGCGAGAAGTGGTGGGAGTTGAGTGACGTGAGGCGTCT
GGATGTGACGCACAACGCGATAGCAGTGCTCGGTCCTTCGTTTTCGTCGC
TGACGGCGCTGCAGGTGCTTCGTGCGGCACACAACCGGCTGGAGCACGTG
GATGCAGCGGCGTTGCAGTCGTCCGAGGCGCTGGTGTTGGTGGATTTGTC
CCACAACGCGCTGGAACGTCTTCCGGCCGTTGGAACGAGCGTGGAGCGTC
TGGATGTGTCGCACAACCGGCTGCGCCATGCCCCTGCGCTTGCTGTGGGC
TCTGTGTTGCAGGTGTTGGACGTGTCTGAGAACAAATCGCTGGAATCGTT
GCCCTCCAGTCTCCCTGCATCGCTGCGACAGCTGCTGGTGAGTGGTTGTC
CCATTCGAGCCCTGCCCAAGCGACTGGAGGGGCTGGAGGTGTTGGAGGCG
GAGCGCTGTAGTCTCTGTGAAGCCCCCACCCTCCCCTCGTCGCTCACTCG
AGCAAACCTTCGCCAAAACCACCTCTCTTCTCTGCCCTTCCTACGCGAGT
GCAATCTCCTCGACACCCTCCTCCTCGGGCTCAACCGCATTTCGGACGTT
TCCGCGCTGGCTCTTTCCGCTCTGCCTTGCCTCTGCGTGCTCGACCTCTC
CTCCAACCCCATCTCTTCTCTCGCCCCCGCCACCTGCCTCCACCTCCGTT
CCCTCCACACCCTAGATCTCTCCAACTGCTCCCTCACGCGCCTCCCTTAC
ACCCTAGGCTTCCTCCCAAACCTCTCCAGACTGCCCCTCGAAGGAAACCC
GCTCAGAACCATCAGGGCGTTGGAGGAGGGCGAGAAGTGGTGGGAGTTGA
GTGACGTGAGGCGTCTGGATGTGACGCACAACGCGATAGCAGTGCTCGGT
CCTTCGTTTTCGTCGCTGACGGCGCTGCAGGTGCTTCGTGCGGCACACAA
CCGGCTGGAGCACGTGGATGCAGCGGCGTTGCAGTCGTCCGAGGCGCTGG
TGTTGGTGGATTTGTCCCACAACGCGCTGGAACGTCTTCCGGCCGTTGGA
ACGAGCGTGGAGCGTCTGGATGTGTCGCACAACCGGCTGCGCCATGCCCC
TGCGCTTGCTGTGGGCTCTGTGTTGCAGGTGTTGGACGTGTCTGAGAACA
AATCGCTGGAATCGTTGCCCTCCAGTCTCCCTGCATCGCTGCGACAGCTG
CTGGTGAGTGGTTGTCCCATTCGAGCCCTGCCCAAGCGACTGGAGGGGCT
GGAGGTGTTGGAGGCGGAGCGCTGTAGTCTCTGTGAAGCCCCCACCCTCC
CCTCGTCGCTCACTCGAGCAAACCTTCGCCAAAACCACCTCTCTTCTCTG
CCCTTCCTACGCGAGTGCAATCTCCTCGACACCCTCCTCCTCGGGCTCAA
CCGCATTTCGGACGTTTCCGCGCTGGCTCTTTCCGCTCTGCCTTGCCTCT
GCGTGCTCGACCTCTCCTCCAACCCCATCTCTTCTCTCGCCCCCGCCACC
TGCCTCCACCTCCGTTCCCTCCACACCCTAGATCTCTCCAACTGCTCCCT
CACGCGCCTCCCTTACACCCTAGGCTTCCTCCCAAACCTCTCCAGACTGC
CCCTCGAAGGAAACCCGCTCAGAACCATCAGG
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