mRNA_M-pyrifera_M_contig73539.17429.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73539.17429.1
Unique NamemRNA_M-pyrifera_M_contig73539.17429.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: A0A072UPU5_MEDTR (Putative transcription factor C2H2 family n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UPU5_MEDTR)

HSP 1 Score: 60.8 bits (146), Expect = 1.200e-8
Identity = 33/102 (32.35%), Postives = 52/102 (50.98%), Query Frame = 1
Query:   31 CNRQQSREAAAIWEEEVLPLAKAVGVPIAPGCSASPERSVFVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCRFLGC 336
            C+R++SR A+ + EE + P  +     ++  C   PE  +F   E+ + +       C  C K FR+E FLD+HL ++H ++L        CLAD C  L C
Sbjct:   56 CSRERSRVASKVIEEYLTPFVEKENYQLSRKCRLHPENDMFRDQEEHRIYLDRNEWRCGYCKKSFREEKFLDQHLDNRHCNLLN--LSHGKCLADLCGALHC 155          
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: A0A7S0RLY2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RLY2_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-8
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 1
Query:   31 CNRQQSREAAAIWEEEVLPL--AKAVGVPIAPGCSASPERSVFVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCRFLGC 336
            C+R  SR A  I ++ V      K     +   C  +P   + ++HEQ K   +     CT C K F++E +LD+HLQ KH D +  P  AT CLA+ C  L C
Sbjct:   37 CDRAVSRHARQILQQYVFKHMHGKQRVDQLPASCPLAPLNDILLEHEQHKARKNKAQHRCTYCQKVFKNEFYLDQHLQRKHVDTI--PHTATSCLAEVCDVLQC 138          
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: A0A061RS28_9CHLO (C2h2-like zinc finger protein isoform 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RS28_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 5.010e-8
Identity = 33/100 (33.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:   31 CNRQQSREAAAIWEEEVLPLAKAVGVPIAPGCSASPERSVFVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCRFL 330
            CNR +SR A  +  + V P  +  G      C   PE+ +++  E  K    S    C  CGK FR E +LD+H++++H D L    + ++CLAD    L
Sbjct:   19 CNRGESRLAREVLRQIVYPHLEQSGFVPPAKCKLKPEQDMYLAQEDHKVEIRSNNWKCKYCGKTFRGEHYLDKHMENRHNDTL----QGSVCLADFAEAL 114          
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: A0A067LND0_JATCU (C2H2-type domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067LND0_JATCU)

HSP 1 Score: 58.5 bits (140), Expect = 7.260e-8
Identity = 35/102 (34.31%), Postives = 49/102 (48.04%), Query Frame = 1
Query:   31 CNRQQSREAAAIWEEEVLPLAKAVGVPIAPGCSASPERSVFVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCRFLGC 336
            C+R++SR A  I EE  +P  +     I+  C   PE  +F   E+ K         C  C K F DE++LD+H  ++H D+L        CLAD C  L C
Sbjct:   38 CSRERSRAAWKIIEEYFMPFVEKERYHISTRCRLHPENDLFRDQEEHKIHQDLHDWRCGYCKKVFYDETYLDKHFDNRHYDILN--VSHGRCLADVCGALHC 137          
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: UPI0009D75289 (uncharacterized protein LOC105633316 isoform X1 n=2 Tax=Jatropha curcas TaxID=180498 RepID=UPI0009D75289)

HSP 1 Score: 58.5 bits (140), Expect = 8.210e-8
Identity = 35/102 (34.31%), Postives = 49/102 (48.04%), Query Frame = 1
Query:   31 CNRQQSREAAAIWEEEVLPLAKAVGVPIAPGCSASPERSVFVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCRFLGC 336
            C+R++SR A  I EE  +P  +     I+  C   PE  +F   E+ K         C  C K F DE++LD+H  ++H D+L        CLAD C  L C
Sbjct:   55 CSRERSRAAWKIIEEYFMPFVEKERYHISTRCRLHPENDLFRDQEEHKIHQDLHDWRCGYCKKVFYDETYLDKHFDNRHYDILN--VSHGRCLADVCGALHC 154          
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: A0A061S337_9CHLO (C2h2-like zinc finger protein isoform 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S337_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.100e-7
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:   31 CNRQQSREAAAIWEEEVLPLAKAVGVPIAPGCSASPERSVFVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCRFL 330
            CNR +SR A  +  + V P  +  G      C   PE+ +++  E  K    S    C  CGK FR E +LD+H+ ++H D L    + ++CLAD    L
Sbjct:   19 CNRGESRLAREVLRQIVYPHLEQSGFVPPAKCKLKPEQDMYLAQEDHKVEIRSNNWKCKYCGKTFRGEHYLDKHMXNRHNDTL----QGSVCLADFAEAL 114          
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: A0A7S4RK22_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RK22_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 1.230e-7
Identity = 36/102 (35.29%), Postives = 50/102 (49.02%), Query Frame = 1
Query:   31 CNRQQSREAAAIWEEEVLPLAKAVGVPIAPG-CSASPERSVFVKHEQMKD---FSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCR 324
            C+R  SR    + E EVL  A   G+   P  C   P R ++ +HE+ K     S      C  CGK FR+E +LD HL+ +H +     P   +CLAD+C 
Sbjct:   48 CSRPISRNVRTLLESEVLKPAVRAGLEGWPARCPLDPARDLYGQHEKQKQRARVSGDLLWKCGICGKAFRNEHYLDLHLERRHMNAT---PAGGVCLADYCE 146          
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: A0A2Z6PGV7_TRISU (C2H2-type domain-containing protein n=3 Tax=Trifolium TaxID=3898 RepID=A0A2Z6PGV7_TRISU)

HSP 1 Score: 55.5 bits (132), Expect = 8.640e-7
Identity = 33/102 (32.35%), Postives = 51/102 (50.00%), Query Frame = 1
Query:   31 CNRQQSREAAAIWEEEVLPLAKAVGVPIAPGCSASPERSVFVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCRFLGC 336
            C+R++SR A  + EE + P  +     ++  C    E  +F   E+ K +       C  C K FR+E F+D+HL ++H ++L D      CLAD C  L C
Sbjct:   19 CSRERSRAAWKVIEEYLTPFVEKENYQLSKKCRLHLENDMFRDQEEHKIYLDRNEWQCGYCKKSFREEKFIDQHLDNRHYNLL-DLSHGK-CLADLCGALHC 118          
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: A0A7S0LRS2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRS2_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 2.720e-6
Identity = 34/107 (31.78%), Postives = 49/107 (45.79%), Query Frame = 1
Query:   10 HLRRATTCNRQQSREAAAIWEEEVLPLAKAVGVPIAPGCSASPERSVFVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCRFL 330
            H      C+R+ +REA    +   +  A   G  ++  C   PE     K E  K      ++ C  C K FR+E FLD HL +KH+D L       +CLA++C  L
Sbjct:   21 HADHQPRCDRELAREARERVDALAISAASWAGSELSSTCVLHPELDRLAKQESGKKRKQGLWS-CPECKKKFRNERFLDLHLDNKHSDSLDFVNH--VCLAEYCDLL 124          
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Match: A0A8K0H2M0_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0H2M0_9ROSA)

HSP 1 Score: 53.5 bits (127), Expect = 5.950e-6
Identity = 31/102 (30.39%), Postives = 50/102 (49.02%), Query Frame = 1
Query:   31 CNRQQSREAAAIWEEEVLPLAKAVGVPIAPGCSASPERSVFVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEATLCLADHCRFLGC 336
            C+R++SR A  I EE ++P        ++  C   P+  ++   EQ K         C  C K F +E++LD+H  ++H ++L      + CLAD C  L C
Sbjct:   94 CSRERSRAAWKIIEEYLMPFVDKERYQLSRRCRLHPDNDLYRDQEQHKIRVDINEWKCEYCKKSFYEETYLDKHFDNRHYNLLN--VSHSRCLADVCGALHC 193          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73539.17429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A072UPU5_MEDTR1.200e-832.35Putative transcription factor C2H2 family n=2 Tax=... [more]
A0A7S0RLY2_9CHLO1.600e-835.58Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A061RS28_9CHLO5.010e-833.00C2h2-like zinc finger protein isoform 1 (Fragment)... [more]
A0A067LND0_JATCU7.260e-834.31C2H2-type domain-containing protein n=1 Tax=Jatrop... [more]
UPI0009D752898.210e-834.31uncharacterized protein LOC105633316 isoform X1 n=... [more]
A0A061S337_9CHLO1.100e-733.00C2h2-like zinc finger protein isoform 1 (Fragment)... [more]
A0A7S4RK22_9DINO1.230e-735.29Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A2Z6PGV7_TRISU8.640e-732.35C2H2-type domain-containing protein n=3 Tax=Trifol... [more]
A0A7S0LRS2_9EUKA2.720e-631.78Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A8K0H2M0_9ROSA5.950e-630.39Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73539contigM-pyrifera_M_contig73539:431..892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue9.4e-13
Seed eggNOG ortholog70448.A0A090M431
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc finger protein
EggNOG OGs28JBI@1,2QRQG@2759,34NBN@3041,37KQU@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.5957282-CDS-M-pyrifera_M_contig73539:430..7211622816632.5957282-CDS-M-pyrifera_M_contig73539:430..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73539 431..721 +
1692278088.7614899-CDS-M-pyrifera_M_contig73539:430..7211692278088.7614899-CDS-M-pyrifera_M_contig73539:430..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73539 431..721 +
1622816632.6096632-CDS-M-pyrifera_M_contig73539:847..8921622816632.6096632-CDS-M-pyrifera_M_contig73539:847..892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73539 848..892 +
1692278088.7732992-CDS-M-pyrifera_M_contig73539:847..8921692278088.7732992-CDS-M-pyrifera_M_contig73539:847..892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73539 848..892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73539.17429.1prot_M-pyrifera_M_contig73539.17429.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73539 431..892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73539.17429.1

>prot_M-pyrifera_M_contig73539.17429.1 ID=prot_M-pyrifera_M_contig73539.17429.1|Name=mRNA_M-pyrifera_M_contig73539.17429.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MDIHLRRATTCNRQQSREAAAIWEEEVLPLAKAVGVPIAPGCSASPERSV
FVKHEQMKDFSSSEYATCTSCGKHFRDESFLDRHLQSKHADVLGDPPEAT
LCLADHCRFLGC
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mRNA from alignment at M-pyrifera_M_contig73539:431..892+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73539.17429.1 ID=mRNA_M-pyrifera_M_contig73539.17429.1|Name=mRNA_M-pyrifera_M_contig73539.17429.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig73539:431..892+ (Macrocystis pyrifera P11B4 male)
ATGGATATTCACCTGAGACGAGCTACAACTTGCAATCGGCAACAGTCGAG AGAAGCAGCCGCAATTTGGGAGGAAGAAGTGCTACCATTGGCAAAAGCAG TTGGAGTACCAATTGCACCGGGGTGCTCTGCAAGTCCAGAGCGATCTGTA TTTGTGAAGCATGAGCAGATGAAGGACTTTTCGTCAAGCGAATATGCAAC TTGTACTTCTTGTGGCAAGCACTTTAGAGATGAGTCATTTCTTGACCGCC ATCTTCAATCCAAGCATGCAGATGTGCTAGGAGACCCTCCAGTAAGTGAA ATGAAGGGAAAGGGGATGAGGTGTTCTTTTTTGGTTGTTGTTGTGTGCGT GTATGCCTTCTCCTCTCTTTCCCAACATCACATATTCTTTTAACATCTTT TTGTTTACGATTTGTAGGAAGCAACATTGTGTTTGGCGGACCATTGTCGA TTCTTGGGTTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73539:431..892+

>mRNA_M-pyrifera_M_contig73539.17429.1 ID=mRNA_M-pyrifera_M_contig73539.17429.1|Name=mRNA_M-pyrifera_M_contig73539.17429.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig73539:431..892+ (Macrocystis pyrifera P11B4 male)
ATGGATATTCACCTGAGACGAGCTACAACTTGCAATCGGCAACAGTCGAG
AGAAGCAGCCGCAATTTGGGAGGAAGAAGTGCTACCATTGGCAAAAGCAG
TTGGAGTACCAATTGCACCGGGGTGCTCTGCAAGTCCAGAGCGATCTGTA
TTTGTGAAGCATGAGCAGATGAAGGACTTTTCGTCAAGCGAATATGCAAC
TTGTACTTCTTGTGGCAAGCACTTTAGAGATGAGTCATTTCTTGACCGCC
ATCTTCAATCCAAGCATGCAGATGTGCTAGGAGACCCTCCAATGGATATT
CACCTGAGACGAGCTACAACTTGCAATCGGCAACAGTCGAGAGAAGCAGC
CGCAATTTGGGAGGAAGAAGTGCTACCATTGGCAAAAGCAGTTGGAGTAC
CAATTGCACCGGGGTGCTCTGCAAGTCCAGAGCGATCTGTATTTGTGAAG
CATGAGCAGATGAAGGACTTTTCGTCAAGCGAATATGCAACTTGTACTTC
TTGTGGCAAGCACTTTAGAGATGAGTCATTTCTTGACCGCCATCTTCAAT
CCAAGCATGCAGATGTGCTAGGAGACCCTCCAGAAGCAACATTGTGTTTG
GCGGACCATTGTCGATTCTTGGGTTGTGAAGCAACATTGTGTTTGGCGGA
CCATTGTCGATTCTTGGGTTGT
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