mRNA_M-pyrifera_M_contig72309.17193.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72309.17193.1
Unique NamemRNA_M-pyrifera_M_contig72309.17193.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72309.17193.1 vs. uniprot
Match: A0A6B1AYI3_9ACTN (SAF domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AYI3_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 1.080e-17
Identity = 51/114 (44.74%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:   94 SVDRLRREWQPIAPSWVITRPLEAGHVVEPGDVEARTLPPAALPSDAVEGSPVGRRLADSVATGEIVRNGRLDVAGATANASRIGDRRGALTLPSPTPHLEPGDRVDLYALLDG 435
            S    R +WQ     WV+T  LEAG  +   D+ +  LP A  P DA  G P G  L DS+ATGEIVR+GRL  A A   A+++G+  G LT+ +    L  GD VDLY L+DG
Sbjct:   51 SAATARAQWQTEIDGWVVTGDLEAGTTLTADDLASTRLPAAGTPHDATTGDPNGFTLRDSMATGEIVRDGRLTTA-AGPLAAQLGEAAGGLTIATDGTPLGAGDLVDLYGLIDG 163
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72309.17193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6B1AYI3_9ACTN1.080e-1744.74SAF domain-containing protein n=1 Tax=Acidimicrobi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72309contigM-pyrifera_M_contig72309:693..1127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816619.6097214-CDS-M-pyrifera_M_contig72309:692..11271622816619.6097214-CDS-M-pyrifera_M_contig72309:692..1127Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72309 693..1127 +
1692278080.9185266-CDS-M-pyrifera_M_contig72309:692..11271692278080.9185266-CDS-M-pyrifera_M_contig72309:692..1127Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72309 693..1127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72309.17193.1prot_M-pyrifera_M_contig72309.17193.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72309 693..1127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72309.17193.1

>prot_M-pyrifera_M_contig72309.17193.1 ID=prot_M-pyrifera_M_contig72309.17193.1|Name=mRNA_M-pyrifera_M_contig72309.17193.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
VARLRHHRRGRAALAALLILGSLLMLSAERASVDRLRREWQPIAPSWVIT
RPLEAGHVVEPGDVEARTLPPAALPSDAVEGSPVGRRLADSVATGEIVRN
GRLDVAGATANASRIGDRRGALTLPSPTPHLEPGDRVDLYALLDG
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mRNA from alignment at M-pyrifera_M_contig72309:693..1127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72309.17193.1 ID=mRNA_M-pyrifera_M_contig72309.17193.1|Name=mRNA_M-pyrifera_M_contig72309.17193.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig72309:693..1127+ (Macrocystis pyrifera P11B4 male)
GTCGCCCGGCTGCGCCACCACCGGCGCGGCCGGGCCGCCCTCGCCGCGCT
GCTGATCCTCGGATCACTGCTGATGCTCTCGGCCGAACGTGCGTCGGTCG
ATCGGCTCCGGCGCGAGTGGCAACCGATCGCGCCCTCGTGGGTGATCACC
CGCCCGCTCGAGGCGGGTCATGTCGTCGAGCCCGGCGACGTCGAGGCGCG
GACCCTGCCACCCGCCGCACTCCCCTCCGACGCCGTCGAGGGGTCGCCGG
TCGGTCGGCGCCTGGCCGATTCGGTTGCGACCGGCGAGATCGTGCGCAAC
GGACGACTCGACGTGGCCGGAGCCACTGCCAACGCGTCCCGCATCGGTGA
CCGGCGCGGCGCGCTCACCCTGCCGTCACCCACTCCCCACCTCGAACCGG
GAGATCGCGTCGATCTCTACGCCCTGCTCGACGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72309:693..1127+

>mRNA_M-pyrifera_M_contig72309.17193.1 ID=mRNA_M-pyrifera_M_contig72309.17193.1|Name=mRNA_M-pyrifera_M_contig72309.17193.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig72309:693..1127+ (Macrocystis pyrifera P11B4 male)
GTCGCCCGGCTGCGCCACCACCGGCGCGGCCGGGCCGCCCTCGCCGCGCT
GCTGATCCTCGGATCACTGCTGATGCTCTCGGCCGAACGTGCGTCGGTCG
ATCGGCTCCGGCGCGAGTGGCAACCGATCGCGCCCTCGTGGGTGATCACC
CGCCCGCTCGAGGCGGGTCATGTCGTCGAGCCCGGCGACGTCGAGGCGCG
GACCCTGCCACCCGCCGCACTCCCCTCCGACGCCGTCGAGGGGTCGCCGG
TCGGTCGGCGCCTGGCCGATTCGGTTGCGACCGGCGAGATCGTGCGCAAC
GGACGACTCGACGTGGCCGGAGCCACTGCCAACGCGTCCCGCATCGGTGA
CCGGCGCGGCGCGCTCACCCTGCCGTCACCCACTCCCCACCTCGAACCGG
GAGATCGCGTCGATCTCTACGCCCTGCTCGACGGAGTCGCCCGGCTGCGC
CACCACCGGCGCGGCCGGGCCGCCCTCGCCGCGCTGCTGATCCTCGGATC
ACTGCTGATGCTCTCGGCCGAACGTGCGTCGGTCGATCGGCTCCGGCGCG
AGTGGCAACCGATCGCGCCCTCGTGGGTGATCACCCGCCCGCTCGAGGCG
GGTCATGTCGTCGAGCCCGGCGACGTCGAGGCGCGGACCCTGCCACCCGC
CGCACTCCCCTCCGACGCCGTCGAGGGGTCGCCGGTCGGTCGGCGCCTGG
CCGATTCGGTTGCGACCGGCGAGATCGTGCGCAACGGACGACTCGACGTG
GCCGGAGCCACTGCCAACGCGTCCCGCATCGGTGACCGGCGCGGCGCGCT
CACCCTGCCGTCACCCACTCCCCACCTCGAACCGGGAGATCGCGTCGATC
TCTACGCCCTGCTCGACGGA
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