mRNA_M-pyrifera_M_contig72152.17169.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72152.17169.1
Unique NamemRNA_M-pyrifera_M_contig72152.17169.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72152.17169.1 vs. uniprot
Match: D7FMS9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS9_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 7.740e-18
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 GGDVSKTAMAEINWDHVVTEPEHLKELKAYRCEECGYTLFPARGEARV 144
            GG + KT+M+E+ WDH+VTEPEHL ELKAY CEECGYTLFPARG   V
Sbjct:  218 GGSLKKTSMSELKWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEV 265
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BLAST of mRNA_M-pyrifera_M_contig72152.17169.1 vs. uniprot
Match: A0A836CG96_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG96_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.610e-11
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 GGDVSKTAMAEINWDHVVTEPEHLKELKAYRCEECGYTLFPAR 129
            G  + +    E+ W+++VTE EH+KEL AYRCE+CGYTLFPAR
Sbjct:   25 GFSIRRVMAPELKWEYLVTEKEHIKELHAYRCEQCGYTLFPAR 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72152.17169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMS9_ECTSI7.740e-1872.92Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A836CG96_9STRA3.610e-1158.14Rubredoxin-like domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72152contigM-pyrifera_M_contig72152:673..816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue8.3e-12
Seed eggNOG ortholog2880.D7FMS9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2CZ9B@1,2S968@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816617.180251-CDS-M-pyrifera_M_contig72152:672..7921622816617.180251-CDS-M-pyrifera_M_contig72152:672..792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72152 673..792 -
1692278079.9823084-CDS-M-pyrifera_M_contig72152:672..7921692278079.9823084-CDS-M-pyrifera_M_contig72152:672..792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72152 673..792 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816617.1913924-UTR-M-pyrifera_M_contig72152:792..8161622816617.1913924-UTR-M-pyrifera_M_contig72152:792..816Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72152 793..816 -
1692278079.9936516-UTR-M-pyrifera_M_contig72152:792..8161692278079.9936516-UTR-M-pyrifera_M_contig72152:792..816Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72152 793..816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72152.17169.1prot_M-pyrifera_M_contig72152.17169.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72152 673..792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72152.17169.1

>prot_M-pyrifera_M_contig72152.17169.1 ID=prot_M-pyrifera_M_contig72152.17169.1|Name=mRNA_M-pyrifera_M_contig72152.17169.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
MAEINWDHVVTEPEHLKELKAYRCEECGYTLFPARGEARV
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mRNA from alignment at M-pyrifera_M_contig72152:673..816-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72152.17169.1 ID=mRNA_M-pyrifera_M_contig72152.17169.1|Name=mRNA_M-pyrifera_M_contig72152.17169.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig72152:673..816- (Macrocystis pyrifera P11B4 male)
GGCGGTGACGTGAGCAAGACGGCGATGGCCGAGATCAACTGGGATCACGT
GGTTACGGAGCCGGAGCACTTGAAGGAGCTCAAGGCCTACCGCTGCGAAG
AATGCGGTTACACGCTTTTTCCGGCAAGAGGTGAGGCACGCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72152:673..816-

>mRNA_M-pyrifera_M_contig72152.17169.1 ID=mRNA_M-pyrifera_M_contig72152.17169.1|Name=mRNA_M-pyrifera_M_contig72152.17169.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig72152:673..816- (Macrocystis pyrifera P11B4 male)
ATGGCCGAGATCAACTGGGATCACGTGGTTACGGAGCCGGAGCACTTGAA
GGAGCTCAAGGCCTACCGCTGCGAAGAATGCGGTTACACGCTTTTTCCGG
CAAGAGGTGAGGCACGCGTCATGGCCGAGATCAACTGGGATCACGTGGTT
ACGGAGCCGGAGCACTTGAAGGAGCTCAAGGCCTACCGCTGCGAAGAATG
CGGTTACACGCTTTTTCCGGCAAGAGGTGAGGCACGCGTC
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